Wall clock time and date at job start Tue Mar 31 2020 15:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53339 * 1 3 3 C 1.54508 * 107.19703 * 2 1 4 4 C 1.52661 * 109.51921 * 116.35723 * 2 1 3 5 5 C 1.52846 * 110.39607 * 75.32583 * 4 2 1 6 6 N 1.46830 * 109.23434 * 179.07870 * 5 4 2 7 7 C 1.34773 * 119.99894 * 155.00323 * 6 5 4 8 8 O 1.21587 * 120.00339 * 359.97438 * 7 6 5 9 9 C 1.47646 * 119.99915 * 179.97438 * 7 6 5 10 10 C 1.40013 * 119.89430 * 359.72753 * 9 7 6 11 11 C 1.36317 * 120.10487 * 179.71682 * 10 9 7 12 12 C 1.40879 * 119.89211 * 0.57662 * 11 10 9 13 13 C 1.41109 * 120.10730 * 179.67591 * 12 11 10 14 14 H 1.08000 * 120.00421 * 204.64565 * 13 12 11 15 15 C 1.40227 * 119.99815 * 24.64113 * 13 12 11 16 16 N 1.30650 * 120.00063 * 17.88140 * 15 13 12 17 17 Si 1.86802 * 120.00199 * 197.87842 * 15 13 12 18 18 H 1.48495 * 109.47001 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47327 * 120.00329 * 17 15 13 20 20 H 1.48501 * 109.46853 * 240.00267 * 17 15 13 21 21 C 1.40890 * 119.79509 * 359.69359 * 12 11 10 22 22 C 1.36320 * 119.89074 * 0.02562 * 21 12 11 23 23 C 1.52845 * 108.52366 * 60.07727 * 5 4 2 24 24 C 1.52672 * 110.35409 * 299.81908 * 23 5 4 25 25 C 1.53334 * 109.53120 * 284.89310 * 24 23 5 26 26 C 1.54487 * 107.52674 * 168.70710 * 24 23 5 27 27 N 1.44795 * 111.16827 * 241.94512 * 2 1 3 28 28 H 1.08999 * 109.47641 * 303.63913 * 1 2 3 29 29 H 1.08995 * 109.46835 * 63.64233 * 1 2 3 30 30 H 1.09003 * 109.46914 * 183.63997 * 1 2 3 31 31 H 1.09003 * 109.46739 * 177.67292 * 3 2 1 32 32 H 1.09003 * 109.46579 * 297.67274 * 3 2 1 33 33 H 1.08996 * 109.47164 * 57.67429 * 3 2 1 34 34 H 1.09232 * 109.45216 * 195.77770 * 4 2 1 35 35 H 1.09254 * 109.42948 * 314.91402 * 4 2 1 36 36 H 1.08703 * 110.43616 * 298.88024 * 5 4 2 37 37 H 0.97001 * 119.99462 * 334.99728 * 6 5 4 38 38 H 1.08004 * 119.94618 * 359.97438 * 10 9 7 39 39 H 1.08004 * 120.05403 * 180.24371 * 11 10 9 40 40 H 0.97001 * 120.00496 * 179.97438 * 16 15 13 41 41 H 1.07999 * 120.05621 * 179.97438 * 21 12 11 42 42 H 1.07994 * 119.94573 * 179.97438 * 22 21 12 43 43 H 1.09238 * 109.37555 * 179.37437 * 23 5 4 44 44 H 1.09226 * 109.38353 * 60.27630 * 23 5 4 45 45 H 1.08998 * 109.47506 * 185.53477 * 25 24 23 46 46 H 1.09002 * 109.46756 * 305.53974 * 25 24 23 47 47 H 1.09004 * 109.47064 * 65.53196 * 25 24 23 48 48 H 1.09004 * 109.47591 * 297.70371 * 26 24 23 49 49 H 1.08998 * 109.47184 * 57.70007 * 26 24 23 50 50 H 1.09001 * 109.47553 * 177.69722 * 26 24 23 51 51 H 1.00898 * 112.57975 * 53.24940 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5334 0.0000 0.0000 3 6 1.9902 1.4760 0.0000 4 6 2.0435 -0.6388 1.2893 5 6 1.8794 -2.1574 1.2325 6 7 2.3972 -2.7466 2.4737 7 6 1.9379 -3.9415 2.8953 8 8 1.0944 -4.5313 2.2481 9 6 2.4591 -4.5342 4.1431 10 6 3.4345 -3.8557 4.8837 11 6 3.9145 -4.3963 6.0394 12 6 3.4363 -5.6454 6.4818 13 6 3.9350 -6.2124 7.6739 14 1 3.8989 -7.2819 7.8196 15 6 4.4776 -5.3871 8.6693 16 7 4.2176 -4.1068 8.6698 17 14 5.5720 -6.1184 9.9949 18 1 5.7106 -7.5799 9.7717 19 1 6.9117 -5.4802 9.9384 20 1 4.9641 -5.8762 11.3279 21 6 2.4588 -6.3270 5.7302 22 6 1.9807 -5.7758 4.5788 23 6 2.6860 -2.6890 0.0481 24 6 2.1811 -2.0762 -1.2560 25 6 0.8512 -2.7305 -1.6487 26 6 3.2048 -2.4230 -2.3599 27 7 2.0563 -0.6350 -1.1916 28 1 -0.3634 0.5693 0.8555 29 1 -0.3633 0.4562 -0.9208 30 1 -0.3633 -1.0256 0.0652 31 1 3.0786 1.5194 0.0417 32 1 1.6416 1.9641 -0.9102 33 1 1.5727 1.9856 0.8684 34 1 3.0992 -0.3931 1.4241 35 1 1.4792 -0.2450 2.1380 36 1 0.8304 -2.4221 1.1270 37 1 3.0700 -2.2758 2.9902 38 1 3.8043 -2.9006 4.5409 39 1 4.6641 -3.8704 6.6121 40 1 4.5925 -3.5359 9.3586 41 1 2.0896 -7.2850 6.0653 42 1 1.2317 -6.2977 4.0017 43 1 2.5873 -3.7759 0.0011 44 1 3.7398 -2.4363 0.1845 45 1 0.5410 -2.3641 -2.6273 46 1 0.9765 -3.8125 -1.6888 47 1 0.0906 -2.4799 -0.9091 48 1 4.1678 -1.9741 -2.1165 49 1 3.3149 -3.5054 -2.4262 50 1 2.8539 -2.0343 -3.3159 51 1 1.6763 -0.2409 -2.0391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:42 Heat of formation + Delta-G solvation = -40.724488 kcal Electronic energy + Delta-G solvation = -28751.471282 eV Core-core repulsion = 25034.966658 eV Total energy + Delta-G solvation = -3716.504623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.25799 -38.71991 -37.06730 -35.16080 -34.51408 -33.86654 -31.04949 -29.62103 -29.41187 -28.70557 -27.74424 -26.75804 -26.30006 -25.87709 -22.77153 -21.35390 -20.81200 -20.67502 -19.60557 -18.27768 -17.52821 -16.86753 -16.07445 -15.68227 -15.43505 -15.24843 -14.48872 -14.16043 -14.09288 -13.94197 -13.60626 -13.50987 -13.35856 -13.17015 -13.04310 -12.78465 -12.63384 -12.30734 -12.23628 -12.08773 -11.93154 -11.75940 -11.74299 -11.60733 -11.36991 -11.29112 -11.26203 -10.98582 -10.91129 -10.76423 -10.68666 -10.53610 -10.38602 -10.03179 -9.56433 -9.35133 -8.91746 -8.54370 -8.22409 -7.71929 -7.54047 -7.03881 -4.60270 2.23738 2.90224 2.94856 3.00424 3.03769 3.73157 3.74085 3.83202 3.87743 4.55239 4.60441 4.73723 4.78889 4.87923 4.94631 5.14908 5.28032 5.35775 5.41032 5.46775 5.56036 5.57595 5.59266 5.66234 5.69573 5.74759 5.80293 5.84663 5.88172 5.98124 6.00929 6.04653 6.06152 6.09222 6.18478 6.23561 6.27722 6.32052 6.44364 6.76916 6.82665 6.97086 7.08358 7.13829 7.43778 7.44565 7.47653 7.66092 7.79844 7.86290 8.07246 8.27642 8.40108 8.63245 8.75474 9.10778 9.88135 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020984 B = 0.002483 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.058153 B =11274.703387 C =11813.324773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.153 3.847 3 C -0.141 4.141 4 C -0.118 4.118 5 C 0.151 3.849 6 N -0.739 5.739 7 C 0.573 3.427 8 O -0.576 6.576 9 C -0.284 4.284 10 C -0.062 4.062 11 C -0.178 4.178 12 C 0.128 3.872 13 C -0.443 4.443 14 H 0.085 0.915 15 C 0.074 3.926 16 N -0.772 5.772 17 Si 0.912 3.088 18 H -0.257 1.257 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.239 4.239 22 C -0.022 4.022 23 C -0.119 4.119 24 C 0.150 3.850 25 C -0.180 4.180 26 C -0.140 4.140 27 N -0.719 5.719 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.396 0.604 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.286 0.714 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 9.946 -14.191 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.062 3.938 3 C -0.199 4.199 4 C -0.157 4.157 5 C 0.046 3.954 6 N -0.391 5.391 7 C 0.367 3.633 8 O -0.458 6.458 9 C -0.289 4.289 10 C -0.082 4.082 11 C -0.198 4.198 12 C 0.125 3.875 13 C -0.470 4.470 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.395 5.395 17 Si 0.736 3.264 18 H -0.181 1.181 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.259 4.259 22 C -0.041 4.041 23 C -0.158 4.158 24 C 0.059 3.941 25 C -0.239 4.239 26 C -0.198 4.198 27 N -0.355 5.355 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.231 0.769 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.080 9.739 -14.217 17.266 hybrid contribution -0.068 -0.049 0.726 0.731 sum -1.148 9.690 -13.491 16.649 Atomic orbital electron populations 1.22799 0.97315 1.02275 1.01820 1.20179 0.91502 0.93469 0.88689 1.22257 1.01820 0.94532 1.01265 1.21902 1.02393 0.94550 0.96823 1.20691 0.98844 0.91639 0.84258 1.46085 1.45312 1.22203 1.25479 1.18584 0.80186 0.79536 0.84946 1.90622 1.34326 1.62071 1.58779 1.18920 1.10058 1.00369 0.99520 1.20475 0.95714 0.96894 0.95080 1.20971 1.03713 0.98684 0.96388 1.17786 0.87426 0.91078 0.91190 1.19876 1.32271 0.95374 0.99517 0.89700 1.26100 0.94783 0.94519 0.99289 1.69752 1.33011 1.05675 1.31058 0.86179 0.79834 0.80839 0.79546 1.18064 1.19384 1.19673 1.20720 1.03457 1.02424 0.99289 1.20356 0.96145 0.93153 0.94477 1.22018 1.00072 1.00852 0.92818 1.20235 0.93892 0.84747 0.95183 1.22751 0.98621 1.01723 1.00809 1.22242 0.99151 1.00926 0.97505 1.54611 1.68583 1.07853 1.04436 0.92138 0.92828 0.92289 0.92069 0.92921 0.92420 0.90893 0.90845 0.89786 0.76916 0.89360 0.86223 0.90301 0.88429 0.88181 0.90828 0.91420 0.93101 0.91999 0.92407 0.92144 0.92406 0.93081 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.23 37.33 0.31 -1.42 16 2 C 0.15 1.46 0.93 -131.94 -0.12 1.34 16 3 C -0.14 -1.16 8.52 37.95 0.32 -0.83 16 4 C -0.12 -1.34 4.13 -26.98 -0.11 -1.46 16 5 C 0.15 2.15 2.33 -67.91 -0.16 1.99 16 6 N -0.74 -12.35 5.02 -54.86 -0.28 -12.62 16 7 C 0.57 12.12 7.74 -12.42 -0.10 12.03 16 8 O -0.58 -13.58 15.96 5.29 0.08 -13.49 16 9 C -0.28 -6.50 5.89 -104.73 -0.62 -7.11 16 10 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 11 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 16 12 C 0.13 3.27 5.58 -106.81 -0.60 2.68 16 13 C -0.44 -11.02 9.04 -37.75 -0.34 -11.36 16 14 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 15 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 16 N -0.77 -18.44 10.95 55.56 0.61 -17.84 16 17 Si 0.91 17.25 29.60 -169.99 -5.03 12.21 16 18 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 22 C -0.02 -0.52 9.52 -39.61 -0.38 -0.90 16 23 C -0.12 -1.58 4.25 -26.98 -0.11 -1.69 16 24 C 0.15 1.61 0.92 -131.94 -0.12 1.48 16 25 C -0.18 -1.96 8.29 37.33 0.31 -1.65 16 26 C -0.14 -1.34 8.52 37.94 0.32 -1.01 16 27 N -0.72 -6.76 4.80 -87.44 -0.42 -7.18 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.65 5.03 -51.93 -0.26 0.39 16 31 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.81 8.05 -51.80 -0.42 0.39 16 35 H 0.07 0.83 8.07 -51.79 -0.42 0.41 16 36 H 0.08 1.38 5.73 -52.10 -0.30 1.08 16 37 H 0.40 6.00 6.60 -40.82 -0.27 5.73 16 38 H 0.09 1.66 6.37 -52.48 -0.33 1.32 16 39 H 0.12 2.96 6.16 -52.48 -0.32 2.64 16 40 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 41 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 42 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 43 H 0.07 1.15 8.02 -51.79 -0.42 0.73 16 44 H 0.07 0.90 8.07 -51.80 -0.42 0.48 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 47 H 0.06 0.69 5.09 -51.93 -0.26 0.43 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.36 2.90 8.82 -39.29 -0.35 2.55 16 LS Contribution 393.72 15.07 5.93 5.93 Total: -1.00 -27.43 393.72 -10.04 -37.46 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -8.36 Total: 14.47 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.58 Total: -18.95 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.09 Total: -37.64 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.43 -10.04 -37.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.262 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds