Wall clock time and date at job start Tue Mar 31 2020 15:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53339 * 1 3 3 C 1.54508 * 107.19703 * 2 1 4 4 C 1.52661 * 109.51921 * 116.35723 * 2 1 3 5 5 C 1.52846 * 110.39607 * 75.32583 * 4 2 1 6 6 N 1.46830 * 109.23434 * 179.07870 * 5 4 2 7 7 C 1.34773 * 119.99894 * 155.00323 * 6 5 4 8 8 O 1.21587 * 120.00339 * 359.97438 * 7 6 5 9 9 C 1.47646 * 119.99915 * 179.97438 * 7 6 5 10 10 C 1.40013 * 119.89430 * 359.72753 * 9 7 6 11 11 C 1.36317 * 120.10487 * 179.71682 * 10 9 7 12 12 C 1.40879 * 119.89211 * 0.57662 * 11 10 9 13 13 C 1.41109 * 120.10730 * 179.67591 * 12 11 10 14 14 H 1.08000 * 120.00421 * 204.64565 * 13 12 11 15 15 C 1.40227 * 119.99815 * 24.64113 * 13 12 11 16 16 N 1.30650 * 120.00063 * 17.88140 * 15 13 12 17 17 Si 1.86802 * 120.00199 * 197.87842 * 15 13 12 18 18 H 1.48495 * 109.47001 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47327 * 120.00329 * 17 15 13 20 20 H 1.48501 * 109.46853 * 240.00267 * 17 15 13 21 21 C 1.40890 * 119.79509 * 359.69359 * 12 11 10 22 22 C 1.36320 * 119.89074 * 0.02562 * 21 12 11 23 23 C 1.52845 * 108.52366 * 60.07727 * 5 4 2 24 24 C 1.52672 * 110.35409 * 299.81908 * 23 5 4 25 25 C 1.53334 * 109.53120 * 284.89310 * 24 23 5 26 26 C 1.54487 * 107.52674 * 168.70710 * 24 23 5 27 27 N 1.44795 * 111.16827 * 241.94512 * 2 1 3 28 28 H 1.08999 * 109.47641 * 303.63913 * 1 2 3 29 29 H 1.08995 * 109.46835 * 63.64233 * 1 2 3 30 30 H 1.09003 * 109.46914 * 183.63997 * 1 2 3 31 31 H 1.09003 * 109.46739 * 177.67292 * 3 2 1 32 32 H 1.09003 * 109.46579 * 297.67274 * 3 2 1 33 33 H 1.08996 * 109.47164 * 57.67429 * 3 2 1 34 34 H 1.09232 * 109.45216 * 195.77770 * 4 2 1 35 35 H 1.09254 * 109.42948 * 314.91402 * 4 2 1 36 36 H 1.08703 * 110.43616 * 298.88024 * 5 4 2 37 37 H 0.97001 * 119.99462 * 334.99728 * 6 5 4 38 38 H 1.08004 * 119.94618 * 359.97438 * 10 9 7 39 39 H 1.08004 * 120.05403 * 180.24371 * 11 10 9 40 40 H 0.97001 * 120.00496 * 179.97438 * 16 15 13 41 41 H 1.07999 * 120.05621 * 179.97438 * 21 12 11 42 42 H 1.07994 * 119.94573 * 179.97438 * 22 21 12 43 43 H 1.09238 * 109.37555 * 179.37437 * 23 5 4 44 44 H 1.09226 * 109.38353 * 60.27630 * 23 5 4 45 45 H 1.08998 * 109.47506 * 185.53477 * 25 24 23 46 46 H 1.09002 * 109.46756 * 305.53974 * 25 24 23 47 47 H 1.09004 * 109.47064 * 65.53196 * 25 24 23 48 48 H 1.09004 * 109.47591 * 297.70371 * 26 24 23 49 49 H 1.08998 * 109.47184 * 57.70007 * 26 24 23 50 50 H 1.09001 * 109.47553 * 177.69722 * 26 24 23 51 51 H 1.00898 * 112.57975 * 53.24940 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5334 0.0000 0.0000 3 6 1.9902 1.4760 0.0000 4 6 2.0435 -0.6388 1.2893 5 6 1.8794 -2.1574 1.2325 6 7 2.3972 -2.7466 2.4737 7 6 1.9379 -3.9415 2.8953 8 8 1.0944 -4.5313 2.2481 9 6 2.4591 -4.5342 4.1431 10 6 3.4345 -3.8557 4.8837 11 6 3.9145 -4.3963 6.0394 12 6 3.4363 -5.6454 6.4818 13 6 3.9350 -6.2124 7.6739 14 1 3.8989 -7.2819 7.8196 15 6 4.4776 -5.3871 8.6693 16 7 4.2176 -4.1068 8.6698 17 14 5.5720 -6.1184 9.9949 18 1 5.7106 -7.5799 9.7717 19 1 6.9117 -5.4802 9.9384 20 1 4.9641 -5.8762 11.3279 21 6 2.4588 -6.3270 5.7302 22 6 1.9807 -5.7758 4.5788 23 6 2.6860 -2.6890 0.0481 24 6 2.1811 -2.0762 -1.2560 25 6 0.8512 -2.7305 -1.6487 26 6 3.2048 -2.4230 -2.3599 27 7 2.0563 -0.6350 -1.1916 28 1 -0.3634 0.5693 0.8555 29 1 -0.3633 0.4562 -0.9208 30 1 -0.3633 -1.0256 0.0652 31 1 3.0786 1.5194 0.0417 32 1 1.6416 1.9641 -0.9102 33 1 1.5727 1.9856 0.8684 34 1 3.0992 -0.3931 1.4241 35 1 1.4792 -0.2450 2.1380 36 1 0.8304 -2.4221 1.1270 37 1 3.0700 -2.2758 2.9902 38 1 3.8043 -2.9006 4.5409 39 1 4.6641 -3.8704 6.6121 40 1 4.5925 -3.5359 9.3586 41 1 2.0896 -7.2850 6.0653 42 1 1.2317 -6.2977 4.0017 43 1 2.5873 -3.7759 0.0011 44 1 3.7398 -2.4363 0.1845 45 1 0.5410 -2.3641 -2.6273 46 1 0.9765 -3.8125 -1.6888 47 1 0.0906 -2.4799 -0.9091 48 1 4.1678 -1.9741 -2.1165 49 1 3.3149 -3.5054 -2.4262 50 1 2.8539 -2.0343 -3.3159 51 1 1.6763 -0.2409 -2.0391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241204.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:41 Heat of formation + Delta-G solvation = -55.434651 kcal Electronic energy + Delta-G solvation = -28752.109162 eV Core-core repulsion = 25034.966658 eV Total energy + Delta-G solvation = -3717.142504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40185 -40.22503 -38.82876 -36.01139 -35.88549 -35.67359 -32.60741 -31.33934 -31.05313 -29.55435 -28.51155 -27.65305 -27.52208 -27.26568 -24.28299 -22.96916 -22.48834 -21.57312 -21.14336 -19.39201 -19.32635 -18.35482 -17.33740 -17.09066 -16.72515 -16.33473 -15.77326 -15.66340 -15.53052 -15.26003 -14.93024 -14.75939 -14.63617 -14.41471 -14.20825 -13.94450 -13.83209 -13.68084 -13.52703 -13.23319 -13.07945 -13.00390 -12.86048 -12.66679 -12.58540 -12.50455 -12.40099 -12.38679 -12.23794 -11.90177 -11.74442 -11.69195 -11.57893 -11.39478 -11.33072 -11.12568 -10.62974 -10.00638 -9.58364 -9.41190 -9.00731 -8.80133 -6.48987 0.43735 1.13907 1.38224 1.41901 1.55099 2.12185 2.17725 2.34312 2.78067 3.03740 3.66300 3.67696 3.80703 3.88167 3.96817 4.05000 4.21318 4.27939 4.29762 4.34816 4.43183 4.44489 4.51440 4.67351 4.72724 4.79193 4.89094 4.90614 4.91790 4.92727 4.97843 5.02073 5.03308 5.07830 5.09680 5.13119 5.15572 5.24696 5.27872 5.29758 5.34578 5.45284 5.51547 5.57104 5.63760 5.81874 5.94062 5.98720 6.21853 6.53242 6.61057 6.71567 6.76470 6.78210 6.88313 7.45499 8.15310 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.020984 B = 0.002483 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.058153 B =11274.703387 C =11813.324773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.153 3.847 3 C -0.134 4.134 4 C -0.114 4.114 5 C 0.151 3.849 6 N -0.723 5.723 7 C 0.573 3.427 8 O -0.605 6.605 9 C -0.294 4.294 10 C -0.053 4.053 11 C -0.197 4.197 12 C 0.102 3.898 13 C -0.473 4.473 14 H 0.084 0.916 15 C 0.038 3.962 16 N -0.797 5.797 17 Si 0.987 3.013 18 H -0.258 1.258 19 H -0.259 1.259 20 H -0.263 1.263 21 C -0.254 4.254 22 C -0.033 4.033 23 C -0.114 4.114 24 C 0.155 3.845 25 C -0.177 4.177 26 C -0.135 4.135 27 N -0.713 5.713 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.406 0.594 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.297 0.703 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.059 0.941 49 H 0.051 0.949 50 H 0.068 0.932 51 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.028 12.087 -14.846 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.061 3.939 3 C -0.192 4.192 4 C -0.152 4.152 5 C 0.046 3.954 6 N -0.374 5.374 7 C 0.366 3.634 8 O -0.490 6.490 9 C -0.298 4.298 10 C -0.072 4.072 11 C -0.217 4.217 12 C 0.099 3.901 13 C -0.500 4.500 14 H 0.103 0.897 15 C -0.181 4.181 16 N -0.421 5.421 17 Si 0.807 3.193 18 H -0.181 1.181 19 H -0.184 1.184 20 H -0.188 1.188 21 C -0.274 4.274 22 C -0.052 4.052 23 C -0.153 4.153 24 C 0.064 3.936 25 C -0.236 4.236 26 C -0.193 4.193 27 N -0.350 5.350 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.242 0.758 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.087 0.913 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.033 11.927 -14.901 19.087 hybrid contribution -0.463 -0.679 0.878 1.203 sum -0.495 11.248 -14.023 17.984 Atomic orbital electron populations 1.22776 0.97209 1.01154 1.02796 1.20206 0.91523 0.94338 0.87784 1.22186 1.01686 0.93040 1.02256 1.21910 1.03115 0.91935 0.98239 1.20837 0.97519 0.93702 0.83312 1.45978 1.44580 1.20664 1.26147 1.18401 0.80001 0.80624 0.84365 1.90605 1.35690 1.63214 1.59459 1.19205 1.10073 1.00247 1.00321 1.20719 0.94672 0.97836 0.93967 1.21009 1.04388 0.98870 0.97390 1.18131 0.88057 0.91956 0.91996 1.20132 1.33854 0.95767 1.00270 0.89750 1.26927 0.95386 0.94724 1.01077 1.69764 1.33324 1.06818 1.32161 0.85069 0.77908 0.79784 0.76521 1.18123 1.18370 1.18802 1.20857 1.03833 1.02941 0.99733 1.20493 0.96363 0.93875 0.94491 1.21950 1.00143 0.99219 0.93978 1.20131 0.93985 0.85522 0.93974 1.22729 0.98457 1.00869 1.01536 1.22185 0.98681 1.00673 0.97758 1.54615 1.68644 1.06785 1.04977 0.91881 0.91260 0.94351 0.92246 0.91590 0.91880 0.90045 0.90664 0.92109 0.75777 0.85928 0.86765 0.89151 0.87876 0.88148 0.93739 0.91119 0.90967 0.93518 0.93859 0.92145 0.92997 0.91265 0.80711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.23 72.10 0.59 -2.50 16 2 C 0.15 2.58 0.93 4.44 0.00 2.59 16 3 C -0.13 -1.77 8.52 72.49 0.62 -1.15 16 4 C -0.11 -2.39 4.13 30.43 0.13 -2.27 16 5 C 0.15 4.24 2.33 44.83 0.10 4.35 16 6 N -0.72 -23.91 5.02 -445.75 -2.24 -26.15 16 7 C 0.57 24.58 7.74 86.73 0.67 25.25 16 8 O -0.61 -29.39 15.96 -3.99 -0.06 -29.45 16 9 C -0.29 -13.64 5.89 -19.93 -0.12 -13.76 16 10 C -0.05 -2.34 9.47 22.25 0.21 -2.13 16 11 C -0.20 -9.80 8.63 22.47 0.19 -9.60 16 12 C 0.10 5.33 5.58 -21.28 -0.12 5.22 16 13 C -0.47 -24.03 9.04 23.46 0.21 -23.82 16 14 H 0.08 4.13 7.91 -2.91 -0.02 4.11 16 15 C 0.04 1.76 5.14 85.35 0.44 2.20 16 16 N -0.80 -38.03 10.95 21.87 0.24 -37.79 16 17 Si 0.99 34.80 29.60 68.60 2.03 36.83 16 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 19 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 20 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 21 C -0.25 -12.82 9.73 22.47 0.22 -12.60 16 22 C -0.03 -1.62 9.52 22.25 0.21 -1.41 16 23 C -0.11 -3.00 4.25 30.43 0.13 -2.88 16 24 C 0.16 3.12 0.92 4.43 0.00 3.13 16 25 C -0.18 -3.75 8.29 72.09 0.60 -3.15 16 26 C -0.13 -2.33 8.52 72.49 0.62 -1.71 16 27 N -0.71 -11.68 4.80 -430.56 -2.07 -13.74 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.82 5.03 -2.39 -0.01 0.81 16 31 H 0.06 0.83 8.12 -2.39 -0.02 0.81 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.60 8.05 -2.26 -0.02 1.59 16 35 H 0.07 1.57 8.07 -2.25 -0.02 1.56 16 36 H 0.06 2.04 5.73 -2.54 -0.01 2.03 16 37 H 0.41 11.75 6.60 -92.71 -0.61 11.14 16 38 H 0.12 4.43 6.37 -2.91 -0.02 4.41 16 39 H 0.11 5.73 6.16 -2.91 -0.02 5.71 16 40 H 0.30 12.52 8.29 -92.71 -0.77 11.75 16 41 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 42 H 0.10 4.81 7.63 -2.91 -0.02 4.79 16 43 H 0.04 1.43 8.02 -2.26 -0.02 1.41 16 44 H 0.07 1.81 8.07 -2.27 -0.02 1.79 16 45 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.05 1.12 8.06 -2.39 -0.02 1.10 16 47 H 0.04 1.04 5.09 -2.39 -0.01 1.03 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 50 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.37 4.77 8.82 -89.70 -0.79 3.98 16 Total: -1.00 -60.79 393.72 2.16 -58.63 By element: Atomic # 1 Polarization: 46.39 SS G_CDS: -0.46 Total: 45.93 kcal Atomic # 6 Polarization: -38.97 SS G_CDS: 4.72 Total: -34.25 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -4.06 Total: -77.68 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.06 Total: -29.45 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Total: -60.79 2.16 -58.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241204.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.200 kcal (2) G-P(sol) polarization free energy of solvation -60.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds