Wall clock time and date at job start Tue Mar 31 2020 15:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53327 * 1 3 3 C 1.54492 * 107.21449 * 2 1 4 4 C 1.52687 * 109.52961 * 116.38253 * 2 1 3 5 5 C 1.52847 * 110.32234 * 75.04079 * 4 2 1 6 6 N 1.46829 * 109.22672 * 179.24402 * 5 4 2 7 7 C 1.34772 * 120.00100 * 155.00089 * 6 5 4 8 8 O 1.21613 * 120.00305 * 359.97438 * 7 6 5 9 9 C 1.47440 * 120.00236 * 180.02562 * 7 6 5 10 10 C 1.39226 * 120.27575 * 355.34535 * 9 7 6 11 11 C 1.38222 * 120.08653 * 180.02562 * 10 9 7 12 12 C 1.38828 * 120.67927 * 0.02562 * 11 10 9 13 13 C 1.37593 * 120.56823 * 0.02562 * 12 11 10 14 14 C 1.40709 * 119.88253 * 359.67580 * 13 12 11 15 15 C 1.40890 * 120.32954 * 180.30167 * 14 13 12 16 16 H 1.08000 * 119.99928 * 215.85214 * 15 14 13 17 17 C 1.40268 * 119.99994 * 35.84983 * 15 14 13 18 18 N 1.30629 * 120.00256 * 8.98008 * 17 15 14 19 19 Si 1.86806 * 119.99882 * 188.97407 * 17 15 14 20 20 H 1.48497 * 109.47226 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46593 * 120.00382 * 19 17 15 22 22 H 1.48501 * 109.47309 * 239.99973 * 19 17 15 23 23 C 1.52847 * 108.50688 * 60.26086 * 5 4 2 24 24 C 1.52668 * 110.38968 * 299.89108 * 23 5 4 25 25 C 1.54502 * 107.51756 * 168.48977 * 24 23 5 26 26 C 1.53340 * 109.51542 * 284.64994 * 24 23 5 27 27 N 1.44795 * 111.19109 * 241.90706 * 2 1 3 28 28 H 1.09000 * 109.47402 * 303.61606 * 1 2 3 29 29 H 1.08995 * 109.46825 * 63.61895 * 1 2 3 30 30 H 1.09001 * 109.46929 * 183.61741 * 1 2 3 31 31 H 1.09000 * 109.47270 * 177.70227 * 3 2 1 32 32 H 1.09005 * 109.46975 * 297.69635 * 3 2 1 33 33 H 1.09000 * 109.47339 * 57.70058 * 3 2 1 34 34 H 1.09222 * 109.44418 * 195.45024 * 4 2 1 35 35 H 1.09227 * 109.44334 * 314.63870 * 4 2 1 36 36 H 1.08691 * 110.45774 * 299.06322 * 5 4 2 37 37 H 0.97002 * 120.00270 * 335.00467 * 6 5 4 38 38 H 1.08000 * 119.95908 * 0.02718 * 10 9 7 39 39 H 1.07999 * 119.66198 * 180.02562 * 11 10 9 40 40 H 1.07995 * 119.71533 * 179.97438 * 12 11 10 41 41 H 1.07998 * 120.05994 * 179.97438 * 13 12 11 42 42 H 0.97002 * 120.00283 * 179.97438 * 18 17 15 43 43 H 1.09238 * 109.37803 * 60.36715 * 23 5 4 44 44 H 1.09241 * 109.36836 * 179.42905 * 23 5 4 45 45 H 1.08995 * 109.47023 * 60.00024 * 25 24 23 46 46 H 1.09002 * 109.46905 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47165 * 299.99622 * 25 24 23 48 48 H 1.09000 * 109.47048 * 60.00088 * 26 24 23 49 49 H 1.08996 * 109.46869 * 179.97438 * 26 24 23 50 50 H 1.08994 * 109.46945 * 299.99821 * 26 24 23 51 51 H 1.00904 * 112.57343 * 53.38003 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5333 0.0000 0.0000 3 6 1.9905 1.4757 0.0000 4 6 2.0437 -0.6395 1.2892 5 6 1.8725 -2.1573 1.2328 6 7 2.3866 -2.7483 2.4747 7 6 1.9214 -3.9407 2.8965 8 8 1.0754 -4.5271 2.2489 9 6 2.4373 -4.5340 4.1438 10 6 3.4729 -3.9157 4.8393 11 6 3.9539 -4.4755 6.0080 12 6 3.4151 -5.6557 6.5021 13 6 2.3918 -6.2904 5.8364 14 6 1.8797 -5.7381 4.6479 15 6 0.8278 -6.3767 3.9620 16 1 0.8004 -6.3635 2.8825 17 6 -0.1840 -7.0298 4.6813 18 7 -0.2507 -6.8997 5.9794 19 14 -1.4362 -8.0854 3.7828 20 1 -1.1434 -8.0697 2.3271 21 1 -1.3610 -9.4800 4.2875 22 1 -2.7994 -7.5461 4.0199 23 6 2.6779 -2.6928 0.0493 24 6 2.1791 -2.0771 -1.2557 25 6 3.2060 -2.4249 -2.3564 26 6 0.8493 -2.7283 -1.6540 27 7 2.0567 -0.6357 -1.1910 28 1 -0.3634 0.5689 0.8558 29 1 -0.3633 0.4566 -0.9206 30 1 -0.3633 -1.0256 0.0648 31 1 3.0789 1.5189 0.0412 32 1 1.6417 1.9641 -0.9100 33 1 1.5735 1.9853 0.8686 34 1 3.1008 -0.3985 1.4208 35 1 1.4832 -0.2427 2.1385 36 1 0.8225 -2.4174 1.1263 37 1 3.0611 -2.2805 2.9915 38 1 3.9009 -2.9974 4.4653 39 1 4.7571 -3.9899 6.5422 40 1 3.8031 -6.0797 7.4165 41 1 1.9791 -7.2084 6.2280 42 1 -0.9507 -7.3510 6.4768 43 1 3.7330 -2.4462 0.1877 44 1 2.5735 -3.7791 0.0019 45 1 3.2835 -3.5079 -2.4517 46 1 2.8800 -1.9987 -3.3051 47 1 4.1791 -2.0131 -2.0887 48 1 0.1126 -2.5600 -0.8684 49 1 0.4937 -2.2879 -2.5854 50 1 0.9961 -3.7996 -1.7910 51 1 1.6785 -0.2407 -2.0390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058242013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:45 Heat of formation + Delta-G solvation = -31.497680 kcal Electronic energy + Delta-G solvation = -29564.744270 eV Core-core repulsion = 25848.639751 eV Total energy + Delta-G solvation = -3716.104519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.14029 -38.59678 -36.73357 -35.08075 -34.38318 -33.59032 -30.86114 -29.81264 -29.09813 -28.51801 -27.65668 -26.68891 -26.20235 -25.40149 -22.92021 -21.45808 -20.62971 -20.59538 -19.42940 -18.15967 -17.47861 -16.42213 -15.92533 -15.42834 -15.29005 -15.10287 -14.37169 -14.26226 -13.96371 -13.93242 -13.54131 -13.33292 -13.26778 -13.04733 -12.95627 -12.69951 -12.58009 -12.28739 -12.16339 -12.05131 -11.72501 -11.67508 -11.55618 -11.53597 -11.17488 -11.13811 -11.05255 -10.85383 -10.67754 -10.61961 -10.47533 -10.44234 -10.28111 -10.06228 -9.64375 -9.26346 -8.33052 -8.30618 -8.14785 -7.57686 -7.31997 -6.78400 -4.37759 2.37371 2.81002 3.11185 3.20638 3.22632 3.88164 3.92703 3.99439 4.18526 4.68156 4.70419 4.82754 4.87847 4.97859 5.03885 5.24279 5.38001 5.45638 5.51367 5.53894 5.63259 5.64057 5.66011 5.74946 5.77644 5.82308 5.89086 5.93880 5.98896 5.99750 6.05638 6.10467 6.12933 6.18039 6.26485 6.28973 6.34296 6.36767 6.50964 6.67410 6.96158 7.11104 7.18725 7.27936 7.47533 7.52412 7.55075 7.63281 7.89609 8.01127 8.19526 8.42959 8.70263 8.85217 8.92701 9.46093 10.17879 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.003706 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.281832 B = 7553.989712 C = 8631.995041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.153 3.847 3 C -0.140 4.140 4 C -0.117 4.117 5 C 0.152 3.848 6 N -0.746 5.746 7 C 0.566 3.434 8 O -0.539 6.539 9 C -0.260 4.260 10 C -0.057 4.057 11 C -0.245 4.245 12 C -0.096 4.096 13 C -0.147 4.147 14 C 0.148 3.852 15 C -0.422 4.422 16 H 0.111 0.889 17 C 0.069 3.931 18 N -0.795 5.795 19 Si 0.914 3.086 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.118 4.118 24 C 0.151 3.849 25 C -0.140 4.140 26 C -0.179 4.179 27 N -0.719 5.719 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.390 0.610 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.281 0.719 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 11.802 -10.937 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.062 3.938 3 C -0.199 4.199 4 C -0.155 4.155 5 C 0.047 3.953 6 N -0.399 5.399 7 C 0.360 3.640 8 O -0.418 6.418 9 C -0.265 4.265 10 C -0.076 4.076 11 C -0.264 4.264 12 C -0.115 4.115 13 C -0.166 4.166 14 C 0.144 3.856 15 C -0.451 4.451 16 H 0.128 0.872 17 C -0.149 4.149 18 N -0.420 5.420 19 Si 0.739 3.261 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.157 4.157 24 C 0.060 3.940 25 C -0.198 4.198 26 C -0.238 4.238 27 N -0.355 5.355 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.224 0.776 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.133 0.867 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.080 0.920 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.222 11.274 -10.920 16.022 hybrid contribution -1.123 -0.246 -0.052 1.151 sum 2.099 11.028 -10.972 15.697 Atomic orbital electron populations 1.22787 0.97304 1.02410 1.01714 1.20178 0.91519 0.93353 0.88787 1.22253 1.01725 0.94668 1.01207 1.21891 1.02107 0.94830 0.96694 1.20644 0.98985 0.91333 0.84379 1.46177 1.45463 1.22815 1.25463 1.18401 0.80868 0.79481 0.85233 1.90644 1.32576 1.60995 1.57547 1.19502 1.06810 1.00080 1.00123 1.20655 0.95433 0.96814 0.94737 1.20288 1.05664 1.00524 0.99916 1.20795 0.97020 0.95629 0.98043 1.21338 0.96653 1.00788 0.97863 1.17489 0.90057 0.87852 0.90245 1.20331 1.03790 1.24076 0.96869 0.87153 1.26131 0.99258 0.94838 0.94644 1.69726 1.30343 1.34275 1.07701 0.86147 0.79612 0.79139 0.81244 1.18016 1.19893 1.19992 1.22010 0.99915 1.00963 0.92805 1.20240 0.93883 0.84675 0.95251 1.22243 0.99082 1.00867 0.97592 1.22736 0.98627 1.01614 1.00856 1.54638 1.68588 1.07867 1.04418 0.92187 0.92909 0.92193 0.92140 0.92976 0.92472 0.91097 0.90968 0.89731 0.77563 0.89264 0.89125 0.89115 0.86710 0.90852 0.91628 0.90733 0.92401 0.93130 0.92271 0.92322 0.93233 0.91982 0.82202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 8.25 37.33 0.31 -1.60 16 2 C 0.15 1.58 0.92 -131.94 -0.12 1.45 16 3 C -0.14 -1.22 8.53 37.94 0.32 -0.90 16 4 C -0.12 -1.41 4.13 -26.97 -0.11 -1.52 16 5 C 0.15 2.32 2.33 -67.91 -0.16 2.16 16 6 N -0.75 -13.18 5.02 -54.93 -0.28 -13.46 16 7 C 0.57 12.98 7.70 -12.51 -0.10 12.88 16 8 O -0.54 -13.96 13.17 5.27 0.07 -13.89 16 9 C -0.26 -6.34 5.92 -104.36 -0.62 -6.96 16 10 C -0.06 -1.23 9.52 -39.22 -0.37 -1.60 16 11 C -0.24 -5.20 10.03 -39.37 -0.39 -5.60 16 12 C -0.10 -2.17 10.01 -39.60 -0.40 -2.57 16 13 C -0.15 -3.75 8.62 -38.88 -0.34 -4.09 16 14 C 0.15 3.97 5.48 -106.54 -0.58 3.38 16 15 C -0.42 -11.64 7.78 -37.82 -0.29 -11.93 16 16 H 0.11 3.16 5.73 -52.49 -0.30 2.86 16 17 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 18 N -0.79 -20.75 11.25 55.56 0.63 -20.12 16 19 Si 0.91 19.80 29.57 -169.99 -5.03 14.77 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 C -0.12 -1.68 4.25 -26.98 -0.11 -1.79 16 24 C 0.15 1.74 0.93 -131.94 -0.12 1.62 16 25 C -0.14 -1.44 8.52 37.95 0.32 -1.12 16 26 C -0.18 -2.17 8.25 37.33 0.31 -1.86 16 27 N -0.72 -7.32 4.80 -87.44 -0.42 -7.74 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.74 5.13 -51.93 -0.27 0.47 16 31 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.82 8.05 -51.80 -0.42 0.40 16 35 H 0.07 0.87 8.08 -51.80 -0.42 0.45 16 36 H 0.08 1.51 5.60 -52.10 -0.29 1.22 16 37 H 0.39 6.07 6.65 -40.82 -0.27 5.80 16 38 H 0.09 1.57 6.42 -52.49 -0.34 1.23 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 41 H 0.11 2.99 6.72 -52.49 -0.35 2.64 16 42 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 43 H 0.07 0.91 8.05 -51.79 -0.42 0.50 16 44 H 0.07 1.25 8.07 -51.79 -0.42 0.83 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 48 H 0.06 0.80 5.16 -51.93 -0.27 0.53 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.35 3.16 8.82 -39.29 -0.35 2.82 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -28.92 389.80 -10.01 -38.94 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -8.31 Total: 13.97 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.55 Total: -18.34 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.07 Total: -41.32 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.07 Total: -13.89 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.92 -10.01 -38.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.438 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds