Wall clock time and date at job start Tue Mar 31 2020 15:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53327 * 1 3 3 C 1.54492 * 107.21449 * 2 1 4 4 C 1.52687 * 109.52961 * 116.38253 * 2 1 3 5 5 C 1.52847 * 110.32234 * 75.04079 * 4 2 1 6 6 N 1.46829 * 109.22672 * 179.24402 * 5 4 2 7 7 C 1.34772 * 120.00100 * 155.00089 * 6 5 4 8 8 O 1.21613 * 120.00305 * 359.97438 * 7 6 5 9 9 C 1.47440 * 120.00236 * 180.02562 * 7 6 5 10 10 C 1.39226 * 120.27575 * 355.34535 * 9 7 6 11 11 C 1.38222 * 120.08653 * 180.02562 * 10 9 7 12 12 C 1.38828 * 120.67927 * 0.02562 * 11 10 9 13 13 C 1.37593 * 120.56823 * 0.02562 * 12 11 10 14 14 C 1.40709 * 119.88253 * 359.67580 * 13 12 11 15 15 C 1.40890 * 120.32954 * 180.30167 * 14 13 12 16 16 H 1.08000 * 119.99928 * 215.85214 * 15 14 13 17 17 C 1.40268 * 119.99994 * 35.84983 * 15 14 13 18 18 N 1.30629 * 120.00256 * 8.98008 * 17 15 14 19 19 Si 1.86806 * 119.99882 * 188.97407 * 17 15 14 20 20 H 1.48497 * 109.47226 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46593 * 120.00382 * 19 17 15 22 22 H 1.48501 * 109.47309 * 239.99973 * 19 17 15 23 23 C 1.52847 * 108.50688 * 60.26086 * 5 4 2 24 24 C 1.52668 * 110.38968 * 299.89108 * 23 5 4 25 25 C 1.54502 * 107.51756 * 168.48977 * 24 23 5 26 26 C 1.53340 * 109.51542 * 284.64994 * 24 23 5 27 27 N 1.44795 * 111.19109 * 241.90706 * 2 1 3 28 28 H 1.09000 * 109.47402 * 303.61606 * 1 2 3 29 29 H 1.08995 * 109.46825 * 63.61895 * 1 2 3 30 30 H 1.09001 * 109.46929 * 183.61741 * 1 2 3 31 31 H 1.09000 * 109.47270 * 177.70227 * 3 2 1 32 32 H 1.09005 * 109.46975 * 297.69635 * 3 2 1 33 33 H 1.09000 * 109.47339 * 57.70058 * 3 2 1 34 34 H 1.09222 * 109.44418 * 195.45024 * 4 2 1 35 35 H 1.09227 * 109.44334 * 314.63870 * 4 2 1 36 36 H 1.08691 * 110.45774 * 299.06322 * 5 4 2 37 37 H 0.97002 * 120.00270 * 335.00467 * 6 5 4 38 38 H 1.08000 * 119.95908 * 0.02718 * 10 9 7 39 39 H 1.07999 * 119.66198 * 180.02562 * 11 10 9 40 40 H 1.07995 * 119.71533 * 179.97438 * 12 11 10 41 41 H 1.07998 * 120.05994 * 179.97438 * 13 12 11 42 42 H 0.97002 * 120.00283 * 179.97438 * 18 17 15 43 43 H 1.09238 * 109.37803 * 60.36715 * 23 5 4 44 44 H 1.09241 * 109.36836 * 179.42905 * 23 5 4 45 45 H 1.08995 * 109.47023 * 60.00024 * 25 24 23 46 46 H 1.09002 * 109.46905 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47165 * 299.99622 * 25 24 23 48 48 H 1.09000 * 109.47048 * 60.00088 * 26 24 23 49 49 H 1.08996 * 109.46869 * 179.97438 * 26 24 23 50 50 H 1.08994 * 109.46945 * 299.99821 * 26 24 23 51 51 H 1.00904 * 112.57343 * 53.38003 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5333 0.0000 0.0000 3 6 1.9905 1.4757 0.0000 4 6 2.0437 -0.6395 1.2892 5 6 1.8725 -2.1573 1.2328 6 7 2.3866 -2.7483 2.4747 7 6 1.9214 -3.9407 2.8965 8 8 1.0754 -4.5271 2.2489 9 6 2.4373 -4.5340 4.1438 10 6 3.4729 -3.9157 4.8393 11 6 3.9539 -4.4755 6.0080 12 6 3.4151 -5.6557 6.5021 13 6 2.3918 -6.2904 5.8364 14 6 1.8797 -5.7381 4.6479 15 6 0.8278 -6.3767 3.9620 16 1 0.8004 -6.3635 2.8825 17 6 -0.1840 -7.0298 4.6813 18 7 -0.2507 -6.8997 5.9794 19 14 -1.4362 -8.0854 3.7828 20 1 -1.1434 -8.0697 2.3271 21 1 -1.3610 -9.4800 4.2875 22 1 -2.7994 -7.5461 4.0199 23 6 2.6779 -2.6928 0.0493 24 6 2.1791 -2.0771 -1.2557 25 6 3.2060 -2.4249 -2.3564 26 6 0.8493 -2.7283 -1.6540 27 7 2.0567 -0.6357 -1.1910 28 1 -0.3634 0.5689 0.8558 29 1 -0.3633 0.4566 -0.9206 30 1 -0.3633 -1.0256 0.0648 31 1 3.0789 1.5189 0.0412 32 1 1.6417 1.9641 -0.9100 33 1 1.5735 1.9853 0.8686 34 1 3.1008 -0.3985 1.4208 35 1 1.4832 -0.2427 2.1385 36 1 0.8225 -2.4174 1.1263 37 1 3.0611 -2.2805 2.9915 38 1 3.9009 -2.9974 4.4653 39 1 4.7571 -3.9899 6.5422 40 1 3.8031 -6.0797 7.4165 41 1 1.9791 -7.2084 6.2280 42 1 -0.9507 -7.3510 6.4768 43 1 3.7330 -2.4462 0.1877 44 1 2.5735 -3.7791 0.0019 45 1 3.2835 -3.5079 -2.4517 46 1 2.8800 -1.9987 -3.3051 47 1 4.1791 -2.0131 -2.0887 48 1 0.1126 -2.5600 -0.8684 49 1 0.4937 -2.2879 -2.5854 50 1 0.9961 -3.7996 -1.7910 51 1 1.6785 -0.2407 -2.0390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058242013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:44 Heat of formation + Delta-G solvation = -48.471529 kcal Electronic energy + Delta-G solvation = -29565.480311 eV Core-core repulsion = 25848.639751 eV Total energy + Delta-G solvation = -3716.840560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.34669 -40.19036 -38.50086 -36.03014 -35.93641 -35.39189 -32.43064 -31.66911 -30.60106 -29.51227 -28.49998 -27.53659 -27.31082 -27.22873 -24.52168 -23.08172 -22.28361 -21.55388 -21.05336 -19.47119 -19.14571 -17.99177 -17.18562 -17.05458 -16.65605 -16.29924 -15.96613 -15.63498 -15.49609 -15.21652 -14.87433 -14.68795 -14.59814 -14.50230 -14.21452 -13.96844 -13.82823 -13.50158 -13.47163 -13.08833 -13.00743 -12.90288 -12.88904 -12.59116 -12.49931 -12.44746 -12.39982 -12.34368 -12.21722 -11.97319 -11.77940 -11.66336 -11.57497 -11.47236 -11.29937 -11.15018 -10.17620 -9.88501 -9.39296 -9.21153 -9.01579 -8.68539 -6.37557 0.52038 0.99953 1.30579 1.44692 1.46792 2.19577 2.36568 2.44037 2.79205 3.04246 3.68763 3.70842 3.83406 3.90618 3.97539 4.06353 4.26667 4.31163 4.32284 4.39489 4.45249 4.51607 4.60267 4.67462 4.73998 4.78403 4.86411 4.89237 4.92775 4.94347 4.98316 5.02931 5.07374 5.11479 5.13652 5.14238 5.24067 5.26222 5.29973 5.33931 5.34582 5.44456 5.52602 5.61955 5.73340 5.82346 6.05850 6.11399 6.35027 6.60743 6.66236 6.76984 6.81777 6.92940 7.02975 7.70423 8.29999 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.003706 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.281832 B = 7553.989712 C = 8631.995041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.152 3.848 3 C -0.132 4.132 4 C -0.110 4.110 5 C 0.151 3.849 6 N -0.726 5.726 7 C 0.561 3.439 8 O -0.579 6.579 9 C -0.279 4.279 10 C -0.054 4.054 11 C -0.234 4.234 12 C -0.092 4.092 13 C -0.177 4.177 14 C 0.117 3.883 15 C -0.464 4.464 16 H 0.085 0.915 17 C 0.033 3.967 18 N -0.825 5.825 19 Si 0.975 3.025 20 H -0.271 1.271 21 H -0.254 1.254 22 H -0.267 1.267 23 C -0.111 4.111 24 C 0.156 3.844 25 C -0.134 4.134 26 C -0.176 4.176 27 N -0.711 5.711 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.404 0.596 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.288 0.712 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.071 0.929 50 H 0.045 0.955 51 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 14.709 -11.408 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.061 3.939 3 C -0.190 4.190 4 C -0.149 4.149 5 C 0.047 3.953 6 N -0.379 5.379 7 C 0.354 3.646 8 O -0.460 6.460 9 C -0.284 4.284 10 C -0.073 4.073 11 C -0.253 4.253 12 C -0.111 4.111 13 C -0.196 4.196 14 C 0.113 3.887 15 C -0.493 4.493 16 H 0.103 0.897 17 C -0.182 4.182 18 N -0.452 5.452 19 Si 0.797 3.203 20 H -0.195 1.195 21 H -0.178 1.178 22 H -0.192 1.192 23 C -0.151 4.151 24 C 0.064 3.936 25 C -0.192 4.192 26 C -0.236 4.236 27 N -0.348 5.348 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.241 0.759 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.138 0.862 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.064 0.936 51 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.989 14.228 -11.387 18.894 hybrid contribution -1.516 -1.011 0.123 1.827 sum 3.472 13.217 -11.264 17.709 Atomic orbital electron populations 1.22776 0.97571 1.00936 1.02737 1.20226 0.91275 0.94516 0.87908 1.22172 1.01824 0.92779 1.02262 1.21886 1.03179 0.91732 0.98062 1.20770 0.97244 0.93756 0.83567 1.45974 1.44793 1.21066 1.26114 1.18432 0.80579 0.80684 0.84894 1.90627 1.34370 1.62425 1.58610 1.19905 1.07640 0.99916 1.00949 1.21077 0.94004 0.97882 0.94344 1.20815 1.05581 0.99457 0.99456 1.21181 0.95545 0.95843 0.98513 1.21277 0.98557 1.01147 0.98617 1.17858 0.90507 0.89010 0.91295 1.20253 1.05903 1.27279 0.95859 0.89737 1.26768 1.00460 0.95558 0.95399 1.69746 1.31474 1.35419 1.08517 0.85262 0.77456 0.78496 0.79098 1.19543 1.17771 1.19161 1.21919 1.00232 0.98942 0.93962 1.20125 0.93765 0.85565 0.94106 1.22179 0.98672 1.00578 0.97775 1.22724 0.98704 1.00922 1.01213 1.54666 1.68540 1.06597 1.05010 0.91880 0.91283 0.94824 0.91949 0.91653 0.91812 0.89630 0.90808 0.92943 0.75939 0.84983 0.84849 0.86197 0.88494 0.90120 0.90786 0.94286 0.93164 0.91224 0.91899 0.94444 0.90959 0.93610 0.80787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 8.25 72.09 0.59 -2.95 16 2 C 0.15 2.80 0.92 4.44 0.00 2.80 16 3 C -0.13 -1.82 8.53 72.49 0.62 -1.21 16 4 C -0.11 -2.46 4.13 30.44 0.13 -2.34 16 5 C 0.15 4.66 2.33 44.83 0.10 4.77 16 6 N -0.73 -25.68 5.02 -445.95 -2.24 -27.91 16 7 C 0.56 26.71 7.70 86.67 0.67 27.38 16 8 O -0.58 -32.20 13.17 -4.07 -0.05 -32.25 16 9 C -0.28 -13.87 5.92 -19.70 -0.12 -13.99 16 10 C -0.05 -2.20 9.52 22.50 0.21 -1.99 16 11 C -0.23 -9.19 10.03 22.41 0.22 -8.96 16 12 C -0.09 -4.04 10.01 22.26 0.22 -3.82 16 13 C -0.18 -9.26 8.62 22.72 0.20 -9.07 16 14 C 0.12 6.57 5.48 -21.11 -0.12 6.46 16 15 C -0.46 -27.38 7.78 23.41 0.18 -27.19 16 16 H 0.08 5.29 5.73 -2.91 -0.02 5.28 16 17 C 0.03 1.78 5.25 85.37 0.45 2.23 16 18 N -0.82 -45.01 11.25 21.88 0.25 -44.76 16 19 Si 0.98 42.82 29.57 68.60 2.03 44.84 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 C -0.11 -3.21 4.25 30.43 0.13 -3.08 16 24 C 0.16 3.49 0.93 4.44 0.00 3.49 16 25 C -0.13 -2.54 8.52 72.49 0.62 -1.92 16 26 C -0.18 -4.35 8.25 72.10 0.59 -3.75 16 27 N -0.71 -12.80 4.80 -430.54 -2.07 -14.86 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.03 0.84 5.13 -2.39 -0.01 0.83 16 31 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.69 8.05 -2.27 -0.02 1.68 16 35 H 0.07 1.64 8.08 -2.27 -0.02 1.62 16 36 H 0.05 2.00 5.60 -2.55 -0.01 1.98 16 37 H 0.40 11.78 6.65 -92.71 -0.62 11.16 16 38 H 0.13 4.11 6.42 -2.91 -0.02 4.09 16 39 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 40 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 41 H 0.10 5.31 6.72 -2.91 -0.02 5.29 16 42 H 0.29 14.17 8.29 -92.71 -0.77 13.40 16 43 H 0.07 1.98 8.05 -2.26 -0.02 1.96 16 44 H 0.04 1.39 8.07 -2.26 -0.02 1.37 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 46 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 48 H 0.04 1.08 5.16 -2.39 -0.01 1.06 16 49 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.37 5.35 8.82 -89.69 -0.79 4.56 16 Total: -1.00 -68.57 389.80 2.17 -66.40 By element: Atomic # 1 Polarization: 42.15 SS G_CDS: -0.46 Total: 41.69 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 4.72 Total: -33.14 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -4.06 Total: -87.54 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -68.57 2.17 -66.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.928 kcal (2) G-P(sol) polarization free energy of solvation -68.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds