Wall clock time and date at job start Tue Mar 31 2020 16:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47210 * 2 1 4 4 C 1.52997 * 109.46946 * 119.99915 * 2 1 3 5 5 N 1.46501 * 109.47270 * 174.99743 * 4 2 1 6 6 C 1.34774 * 120.00361 * 179.97438 * 5 4 2 7 7 O 1.21543 * 119.99786 * 0.02562 * 6 5 4 8 8 C 1.47889 * 119.99950 * 179.97438 * 6 5 4 9 9 C 1.39919 * 120.02568 * 359.97438 * 8 6 5 10 10 C 1.38331 * 120.35862 * 180.02562 * 9 8 6 11 11 C 1.37761 * 120.41157 * 359.95764 * 10 9 8 12 12 C 1.40745 * 120.03583 * 0.04110 * 11 10 9 13 13 C 1.41441 * 120.17541 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00235 * 24.39553 * 13 12 11 15 15 C 1.39938 * 119.99943 * 204.40127 * 13 12 11 16 16 N 1.30830 * 120.00373 * 17.85208 * 15 13 12 17 17 Si 1.86800 * 119.99826 * 197.84868 * 15 13 12 18 18 H 1.48504 * 109.47258 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47099 * 119.99848 * 17 15 13 20 20 H 1.48500 * 109.47353 * 240.00034 * 17 15 13 21 21 C 1.38998 * 120.02408 * 180.02562 * 8 6 5 22 22 N 1.46899 * 109.47180 * 239.99725 * 2 1 3 23 23 C 1.46847 * 110.99886 * 295.79486 * 22 2 1 24 24 C 1.53042 * 109.52419 * 185.83911 * 23 22 2 25 25 C 1.53120 * 109.27483 * 300.81685 * 24 23 22 26 26 C 1.53001 * 109.52105 * 177.55561 * 25 24 23 27 27 C 1.53127 * 109.16210 * 57.65590 * 25 24 23 28 28 C 1.46853 * 110.99861 * 59.99647 * 22 2 1 29 29 H 1.09001 * 109.47071 * 59.99886 * 1 2 3 30 30 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46668 * 300.00285 * 1 2 3 32 32 H 1.08998 * 109.47657 * 54.99887 * 4 2 1 33 33 H 1.09000 * 109.47457 * 294.99595 * 4 2 1 34 34 H 0.97010 * 119.99664 * 0.02562 * 5 4 2 35 35 H 1.07997 * 119.82442 * 0.02562 * 9 8 6 36 36 H 1.07999 * 119.79567 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.98037 * 180.02562 * 11 10 9 38 38 H 0.96995 * 119.99719 * 180.02562 * 16 15 13 39 39 H 1.08005 * 120.20076 * 359.70543 * 21 8 6 40 40 H 1.08996 * 109.46308 * 305.84881 * 23 22 2 41 41 H 1.08994 * 109.46418 * 65.81930 * 23 22 2 42 42 H 1.08992 * 109.50289 * 180.87723 * 24 23 22 43 43 H 1.09002 * 109.50123 * 60.75335 * 24 23 22 44 44 H 1.08997 * 109.52792 * 297.75093 * 25 24 23 45 45 H 1.08989 * 109.47311 * 300.31685 * 26 25 24 46 46 H 1.08996 * 109.46860 * 60.32538 * 26 25 24 47 47 H 1.09007 * 109.47010 * 180.31539 * 26 25 24 48 48 H 1.09001 * 109.50224 * 182.40103 * 27 25 24 49 49 H 1.08995 * 109.50340 * 62.28272 * 27 25 24 50 50 H 1.08990 * 109.46620 * 294.18347 * 28 22 2 51 51 H 1.09002 * 109.45919 * 54.14811 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4283 2.1912 7 8 3.5687 -1.8842 3.1420 8 6 5.6469 -1.5350 2.1316 9 6 6.3431 -1.0117 1.0365 10 6 7.7216 -1.1082 0.9735 11 6 8.4250 -1.7194 1.9881 12 6 7.7419 -2.2516 3.0976 13 6 8.4611 -2.8803 4.1407 14 1 9.4977 -2.6289 4.3098 15 6 7.8295 -3.8283 4.9535 16 7 6.7169 -4.3917 4.5583 17 14 8.5752 -4.2894 6.6030 18 1 9.8254 -3.5164 6.8145 19 1 7.6099 -3.9768 7.6874 20 1 8.8834 -5.7420 6.6183 21 6 6.3415 -2.1561 3.1631 22 7 2.0197 -0.6925 -1.1994 23 6 1.6327 -2.1090 -1.1840 24 6 2.2800 -2.8290 -2.3693 25 6 1.8215 -2.1695 -3.6729 26 6 2.5127 -2.8457 -4.8586 27 6 2.1936 -0.6844 -3.6428 28 6 1.5488 -0.0267 -2.4206 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6054 -1.7198 1.2952 33 1 1.7517 -0.1583 2.1370 34 1 3.9825 -0.4622 0.4319 35 1 5.8013 -0.5299 0.2361 36 1 8.2497 -0.7015 0.1238 37 1 9.5012 -1.7905 1.9319 38 1 6.2790 -5.0485 5.1219 39 1 5.8086 -2.5579 4.0122 40 1 1.9683 -2.5671 -0.2537 41 1 0.5483 -2.1900 -1.2581 42 1 1.9800 -3.8768 -2.3665 43 1 3.3648 -2.7601 -2.2885 44 1 0.7410 -2.2722 -3.7729 45 1 3.5929 -2.7443 -4.7556 46 1 2.2472 -3.9027 -4.8793 47 1 2.1900 -2.3719 -5.7858 48 1 1.8319 -0.2002 -4.5500 49 1 3.2770 -0.5819 -3.5821 50 1 0.4648 -0.1175 -2.4889 51 1 1.8235 1.0276 -2.3884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067270222.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:11 Heat of formation + Delta-G solvation = -49.962188 kcal Electronic energy + Delta-G solvation = -28745.915884 eV Core-core repulsion = 25029.010684 eV Total energy + Delta-G solvation = -3716.905200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.14606 -40.29628 -38.77736 -37.09678 -35.62297 -34.82948 -32.37393 -31.75669 -31.51148 -31.22428 -28.10818 -27.71521 -26.94491 -24.25382 -24.06265 -23.33930 -22.74610 -21.49261 -20.99398 -20.14877 -19.41443 -17.96738 -17.41597 -17.12673 -16.77548 -16.41587 -15.90530 -15.78038 -15.61086 -15.40136 -15.30244 -15.01438 -14.91951 -14.40996 -14.26726 -14.18206 -13.86503 -13.68964 -13.45770 -13.33379 -13.13862 -12.95146 -12.78412 -12.72761 -12.57103 -12.51700 -12.40312 -12.20283 -12.14281 -11.87555 -11.68480 -11.52594 -11.47720 -11.10605 -11.06981 -11.05762 -10.74866 -10.06033 -9.43698 -9.35904 -9.19739 -8.65329 -6.36518 0.41826 1.02324 1.36442 1.47307 1.52855 2.13710 2.20061 2.31924 2.80939 2.94058 3.66972 3.72513 3.86831 3.89380 3.94779 4.08107 4.15214 4.28793 4.37865 4.39547 4.44798 4.47781 4.57152 4.62909 4.63556 4.70417 4.76727 4.80773 4.84630 4.87759 4.93867 4.96459 5.04667 5.06147 5.10692 5.19707 5.21831 5.24339 5.30968 5.32185 5.33647 5.36955 5.52184 5.55572 5.60184 5.89886 5.95761 6.07499 6.14184 6.22005 6.30757 6.55984 6.76813 6.89540 6.96832 7.38874 8.31508 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.002828 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.982916 B = 9898.397879 C =10485.639025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 H 0.104 0.896 4 C 0.126 3.874 5 N -0.698 5.698 6 C 0.557 3.443 7 O -0.596 6.596 8 C -0.138 4.138 9 C -0.193 4.193 10 C -0.096 4.096 11 C -0.217 4.217 12 C 0.067 3.933 13 C -0.497 4.497 14 H 0.084 0.916 15 C 0.029 3.971 16 N -0.825 5.825 17 Si 0.983 3.017 18 H -0.251 1.251 19 H -0.271 1.271 20 H -0.264 1.264 21 C -0.131 4.131 22 N -0.537 5.537 23 C 0.054 3.946 24 C -0.111 4.111 25 C -0.088 4.088 26 C -0.144 4.144 27 C -0.108 4.108 28 C 0.055 3.945 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.416 0.584 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.286 0.714 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.062 0.938 50 H 0.043 0.957 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 8.161 -16.835 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.030 4.030 3 H 0.122 0.878 4 C 0.002 3.998 5 N -0.351 5.351 6 C 0.347 3.653 7 O -0.478 6.478 8 C -0.141 4.141 9 C -0.213 4.213 10 C -0.114 4.114 11 C -0.237 4.237 12 C 0.065 3.935 13 C -0.527 4.527 14 H 0.102 0.898 15 C -0.186 4.186 16 N -0.451 5.451 17 Si 0.803 3.197 18 H -0.174 1.174 19 H -0.196 1.196 20 H -0.189 1.189 21 C -0.151 4.151 22 N -0.262 5.262 23 C -0.074 4.074 24 C -0.149 4.149 25 C -0.107 4.107 26 C -0.202 4.202 27 C -0.146 4.146 28 C -0.072 4.072 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.254 0.746 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.496 7.700 -16.148 21.822 hybrid contribution -0.402 -0.692 0.862 1.176 sum -12.898 7.007 -15.287 21.193 Atomic orbital electron populations 1.22329 0.95040 1.02527 1.03744 1.21906 0.94390 0.98560 0.88133 0.87820 1.21496 0.79833 1.00205 0.98298 1.45589 1.07546 1.58993 1.22944 1.18749 0.87989 0.76738 0.81862 1.90657 1.70958 1.50426 1.35768 1.19796 0.91603 1.04368 0.98313 1.20818 0.94461 1.07509 0.98523 1.20907 0.93910 0.98455 0.98099 1.21397 0.99047 1.07813 0.95440 1.17943 0.91890 0.91044 0.92657 1.19877 0.99100 1.20332 1.13355 0.89838 1.26862 0.94679 0.94290 1.02773 1.69909 1.17224 1.20495 1.37483 0.85155 0.79360 0.78815 0.76371 1.17402 1.19583 1.18860 1.21425 0.94808 1.00530 0.98384 1.62100 1.60021 1.01993 1.02057 1.22058 0.97829 0.88882 0.98632 1.21628 1.00563 0.98629 0.94107 1.21144 0.99932 0.95466 0.94140 1.21790 1.00387 1.00313 0.97688 1.21639 1.01167 0.94513 0.97287 1.22163 0.97697 0.98629 0.88701 0.90281 0.92814 0.91045 0.93167 0.91849 0.74566 0.84978 0.84486 0.87378 0.90396 0.88453 0.92911 0.94045 0.91907 0.92622 0.91252 0.93184 0.92914 0.91662 0.90039 0.91966 0.93846 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 8.50 71.98 0.61 -1.99 16 2 C 0.08 1.45 2.57 44.92 0.12 1.57 16 3 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.13 3.43 4.51 86.38 0.39 3.82 16 5 N -0.70 -23.11 5.34 -465.95 -2.49 -25.60 16 6 C 0.56 25.38 7.77 86.80 0.67 26.05 16 7 O -0.60 -31.98 16.33 -3.85 -0.06 -32.04 16 8 C -0.14 -6.73 5.87 -20.13 -0.12 -6.84 16 9 C -0.19 -7.89 9.55 22.70 0.22 -7.68 16 10 C -0.10 -3.90 10.01 22.18 0.22 -3.68 16 11 C -0.22 -10.38 9.78 22.77 0.22 -10.15 16 12 C 0.07 3.72 5.57 -21.32 -0.12 3.60 16 13 C -0.50 -27.62 9.05 23.47 0.21 -27.41 16 14 H 0.08 4.38 7.91 -2.91 -0.02 4.36 16 15 C 0.03 1.53 5.14 85.25 0.44 1.97 16 16 N -0.83 -47.04 10.95 21.83 0.24 -46.80 16 17 Si 0.98 40.43 29.59 68.60 2.03 42.46 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 21 C -0.13 -7.46 8.23 23.01 0.19 -7.27 16 22 N -0.54 -10.05 4.12 -871.11 -3.59 -13.65 16 23 C 0.05 1.15 4.67 86.33 0.40 1.55 16 24 C -0.11 -2.25 5.38 30.65 0.16 -2.08 16 25 C -0.09 -1.35 2.79 -10.71 -0.03 -1.38 16 26 C -0.14 -2.06 9.20 71.98 0.66 -1.39 16 27 C -0.11 -1.50 5.38 30.65 0.16 -1.34 16 28 C 0.06 0.77 4.89 86.33 0.42 1.20 16 29 H 0.08 0.92 6.54 -2.39 -0.02 0.91 16 30 H 0.05 0.88 6.63 -2.39 -0.02 0.86 16 31 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.05 1.53 6.51 -2.39 -0.02 1.52 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.42 12.04 6.16 -92.70 -0.57 11.46 16 35 H 0.13 4.27 6.38 -2.91 -0.02 4.25 16 36 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.29 14.97 8.30 -92.71 -0.77 14.20 16 39 H 0.10 6.19 5.74 -2.91 -0.02 6.17 16 40 H 0.05 1.44 6.01 -2.39 -0.01 1.43 16 41 H 0.04 0.80 6.71 -2.39 -0.02 0.78 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.04 0.55 6.63 -2.39 -0.02 0.54 16 51 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 Total: -1.00 -68.81 393.85 1.32 -67.49 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: 0.35 Total: 39.60 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 4.84 Total: -31.47 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -5.84 Total: -86.05 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.06 Total: -32.04 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -68.81 1.32 -67.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067270222.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.526 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds