Wall clock time and date at job start Tue Mar 31 2020 16:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47009 * 2 1 4 4 C 1.52991 * 109.47143 * 240.00072 * 2 1 3 5 5 N 1.46504 * 109.47307 * 184.61084 * 4 2 1 6 6 C 1.34773 * 120.00162 * 183.91585 * 5 4 2 7 7 O 1.21544 * 120.00069 * 359.97438 * 6 5 4 8 8 C 1.47886 * 119.99818 * 179.97438 * 6 5 4 9 9 C 1.39914 * 120.02663 * 359.71957 * 8 6 5 10 10 C 1.38330 * 120.36160 * 179.74041 * 9 8 6 11 11 C 1.37753 * 120.41139 * 0.56277 * 10 9 8 12 12 C 1.40754 * 120.03662 * 359.69433 * 11 10 9 13 13 C 1.41436 * 120.17947 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00225 * 151.27249 * 13 12 11 15 15 C 1.39942 * 119.99911 * 331.27608 * 13 12 11 16 16 N 1.30824 * 120.00274 * 160.69497 * 15 13 12 17 17 Si 1.86807 * 119.99894 * 340.69712 * 15 13 12 18 18 H 1.48497 * 109.46851 * 95.16562 * 17 15 13 19 19 H 1.48502 * 109.46919 * 215.16088 * 17 15 13 20 20 H 1.48495 * 109.46912 * 335.16153 * 17 15 13 21 21 C 1.38999 * 120.02533 * 179.97438 * 8 6 5 22 22 N 1.46899 * 109.47100 * 119.99976 * 2 1 3 23 23 C 1.46847 * 110.99740 * 59.87596 * 22 2 1 24 24 C 1.53048 * 109.52048 * 174.16212 * 23 22 2 25 25 C 1.53115 * 109.27833 * 59.18072 * 24 23 22 26 26 C 1.52996 * 109.52229 * 182.44065 * 25 24 23 27 27 C 1.53117 * 109.16091 * 302.34660 * 25 24 23 28 28 C 1.46848 * 111.00058 * 295.67166 * 22 2 1 29 29 H 1.09005 * 109.47313 * 59.99675 * 1 2 3 30 30 H 1.09002 * 109.47521 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47269 * 299.99923 * 1 2 3 32 32 H 1.09002 * 109.47592 * 304.60854 * 4 2 1 33 33 H 1.09001 * 109.47372 * 64.61003 * 4 2 1 34 34 H 0.97004 * 119.99395 * 3.91027 * 5 4 2 35 35 H 1.08003 * 119.82290 * 0.02562 * 9 8 6 36 36 H 1.08004 * 119.79579 * 180.28116 * 10 9 8 37 37 H 1.07999 * 119.98229 * 179.71894 * 11 10 9 38 38 H 0.96995 * 120.00511 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.20311 * 359.95246 * 21 8 6 40 40 H 1.08997 * 109.46559 * 54.14831 * 23 22 2 41 41 H 1.09002 * 109.46517 * 294.17811 * 23 22 2 42 42 H 1.08995 * 109.50146 * 299.23631 * 24 23 22 43 43 H 1.08997 * 109.49758 * 179.12364 * 24 23 22 44 44 H 1.08997 * 109.52139 * 62.24905 * 25 24 23 45 45 H 1.08998 * 109.47535 * 59.99817 * 26 25 24 46 46 H 1.09002 * 109.47101 * 180.02562 * 26 25 24 47 47 H 1.09003 * 109.46999 * 300.00153 * 26 25 24 48 48 H 1.08999 * 109.50427 * 177.59830 * 27 25 24 49 49 H 1.09001 * 109.50198 * 297.71023 * 27 25 24 50 50 H 1.09006 * 109.45820 * 305.85507 * 28 22 2 51 51 H 1.09001 * 109.46685 * 65.81765 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5008 -0.8181 -1.1950 6 6 4.1799 -1.3478 -2.2316 7 8 3.5805 -1.7455 -3.2113 8 6 5.6546 -1.4451 -2.1770 9 6 6.3457 -0.9820 -1.0520 10 6 7.7245 -1.0745 -0.9914 11 6 8.4342 -1.6128 -2.0423 12 6 7.7567 -2.0789 -3.1846 13 6 8.4823 -2.6326 -4.2650 14 1 8.0244 -3.3792 -4.8969 15 6 9.7936 -2.2130 -4.5154 16 7 10.5909 -2.9552 -5.2399 17 14 10.4058 -0.5931 -3.8147 18 1 11.1113 -0.8436 -2.5323 19 1 11.3408 0.0411 -4.7784 20 1 9.2518 0.3108 -3.5767 21 6 6.3556 -1.9917 -3.2456 22 7 2.0196 -0.6925 1.1994 23 6 1.5463 -2.0821 1.2348 24 6 2.1910 -2.8121 2.4154 25 6 1.8216 -2.0941 3.7164 26 6 2.5126 -2.7832 4.8947 27 6 2.2824 -0.6363 3.6342 28 6 1.6351 0.0305 2.4184 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6108 -1.7223 -1.2915 33 1 1.7456 -0.1619 -2.1373 34 1 3.9792 -0.5009 -0.4130 35 1 5.7992 -0.5542 -0.2245 36 1 8.2484 -0.7184 -0.1166 37 1 9.5109 -1.6774 -1.9895 38 1 11.4999 -2.6646 -5.4131 39 1 5.8266 -2.3474 -4.1174 40 1 1.8192 -2.5825 0.3057 41 1 0.4623 -2.0939 1.3487 42 1 3.2743 -2.8128 2.2951 43 1 1.8276 -3.8391 2.4506 44 1 0.7411 -2.1272 3.8565 45 1 3.5929 -2.7468 4.7543 46 1 2.2487 -2.2718 5.8204 47 1 2.1882 -3.8225 4.9489 48 1 1.9843 -0.1088 4.5403 49 1 3.3672 -0.6027 3.5332 50 1 1.9724 1.0647 2.3488 51 1 0.5507 0.0090 2.5267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067270224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:15 Heat of formation + Delta-G solvation = -32.738843 kcal Electronic energy + Delta-G solvation = -28549.000856 eV Core-core repulsion = 24832.842516 eV Total energy + Delta-G solvation = -3716.158340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.11836 -39.08569 -37.28565 -36.21159 -33.82887 -33.53235 -31.36919 -31.04540 -30.43407 -29.92285 -27.47920 -26.55561 -25.04964 -23.56783 -23.05332 -22.43021 -20.78089 -20.52392 -19.81134 -19.45779 -17.79637 -16.63189 -16.33176 -15.83901 -15.52068 -15.07021 -14.92726 -14.70146 -14.62952 -14.45190 -14.33412 -13.70102 -13.64433 -13.36566 -13.03857 -12.92951 -12.70517 -12.68132 -12.60939 -12.44383 -12.04183 -11.98820 -11.89811 -11.72218 -11.50876 -11.45174 -11.00863 -10.96851 -10.87655 -10.74327 -10.50206 -10.48464 -10.37097 -9.96580 -9.66749 -9.37157 -9.08234 -8.70356 -8.49176 -7.80688 -7.70987 -6.98166 -4.51162 1.99402 2.56912 3.07978 3.19911 3.28725 3.47189 3.70455 3.78659 3.96047 4.45488 4.52566 4.53750 4.56617 4.60544 4.85226 5.00572 5.04426 5.05056 5.14737 5.26853 5.35069 5.37593 5.40645 5.42350 5.44860 5.48396 5.52459 5.62353 5.69445 5.72167 5.76870 5.83256 5.92277 5.93788 5.97209 5.98040 6.01305 6.11619 6.23722 6.44343 6.72231 6.73632 6.77289 6.89180 6.92578 7.03271 7.26682 7.48060 7.56493 7.80068 7.91193 8.13653 8.31916 8.58224 8.74395 8.83435 10.04084 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.002757 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.524581 B =10152.419838 C =10956.204138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.068 3.932 3 H 0.090 0.910 4 C 0.129 3.871 5 N -0.721 5.721 6 C 0.561 3.439 7 O -0.555 6.555 8 C -0.106 4.106 9 C -0.213 4.213 10 C -0.084 4.084 11 C -0.224 4.224 12 C 0.082 3.918 13 C -0.443 4.443 14 H 0.093 0.907 15 C 0.084 3.916 16 N -0.804 5.804 17 Si 0.911 3.089 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.244 1.244 21 C -0.138 4.138 22 N -0.528 5.528 23 C 0.050 3.950 24 C -0.112 4.112 25 C -0.093 4.093 26 C -0.147 4.147 27 C -0.112 4.112 28 C 0.055 3.945 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.408 0.592 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.286 0.714 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.538 6.056 17.616 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.041 4.041 3 H 0.108 0.892 4 C 0.004 3.996 5 N -0.375 5.375 6 C 0.351 3.649 7 O -0.434 6.434 8 C -0.109 4.109 9 C -0.233 4.233 10 C -0.102 4.102 11 C -0.243 4.243 12 C 0.079 3.921 13 C -0.471 4.471 14 H 0.111 0.889 15 C -0.136 4.136 16 N -0.428 5.428 17 Si 0.738 3.262 18 H -0.196 1.196 19 H -0.218 1.218 20 H -0.167 1.167 21 C -0.158 4.158 22 N -0.253 5.253 23 C -0.078 4.078 24 C -0.150 4.150 25 C -0.111 4.111 26 C -0.204 4.204 27 C -0.149 4.149 28 C -0.073 4.073 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.245 0.755 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.092 0.908 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -16.234 5.668 16.731 23.991 hybrid contribution -0.251 0.782 0.674 1.063 sum -16.485 6.450 17.405 24.825 Atomic orbital electron populations 1.22381 0.96625 1.02648 1.02632 1.21980 0.93315 0.98761 0.89999 0.89183 1.21298 0.81663 1.00285 0.96312 1.45780 1.06377 1.64442 1.20902 1.18788 0.88159 0.76203 0.81776 1.90686 1.70752 1.49101 1.32854 1.19436 0.90363 1.04314 0.96828 1.20416 0.94087 1.10614 0.98173 1.20508 0.93779 0.98582 0.97320 1.21168 0.98517 1.09518 0.95141 1.17688 0.91622 0.90281 0.92514 1.19513 0.96291 1.20098 1.11240 0.88911 1.26169 0.95661 0.98631 0.93090 1.69698 1.06920 1.35753 1.30415 0.86317 0.79507 0.82406 0.78010 1.19568 1.21751 1.16708 1.21255 0.93761 1.03300 0.97490 1.62090 1.59570 1.02182 1.01435 1.22173 0.96966 0.88908 0.99722 1.21654 1.02057 0.98143 0.93158 1.21170 0.99620 0.95188 0.95163 1.21811 1.00962 1.00160 0.97454 1.21650 1.01664 0.95000 0.96626 1.22089 0.97688 0.97743 0.89757 0.91580 0.92018 0.92083 0.91994 0.91255 0.75485 0.88408 0.88390 0.87969 0.90360 0.86792 0.90118 0.94777 0.90708 0.91724 0.91904 0.92381 0.92943 0.92821 0.91814 0.90823 0.90824 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 8.50 37.16 0.32 -1.08 16 2 C 0.07 0.63 2.53 -67.72 -0.17 0.45 16 3 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 4 C 0.13 1.60 4.68 -4.04 -0.02 1.58 16 5 N -0.72 -10.90 5.36 -61.24 -0.33 -11.22 16 6 C 0.56 11.20 7.77 -12.31 -0.10 11.10 16 7 O -0.55 -12.71 16.33 5.33 0.09 -12.63 16 8 C -0.11 -2.31 5.87 -105.04 -0.62 -2.93 16 9 C -0.21 -4.20 9.55 -38.92 -0.37 -4.57 16 10 C -0.08 -1.73 10.01 -39.73 -0.40 -2.13 16 11 C -0.22 -5.29 7.21 -38.81 -0.28 -5.57 16 12 C 0.08 2.09 5.12 -106.87 -0.55 1.55 16 13 C -0.44 -12.07 9.56 -37.73 -0.36 -12.43 16 14 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 15 C 0.08 2.19 5.39 -17.34 -0.09 2.10 16 16 N -0.80 -21.39 13.93 55.55 0.77 -20.61 16 17 Si 0.91 20.59 24.52 -169.99 -4.17 16.42 16 18 H -0.27 -5.84 6.67 56.52 0.38 -5.47 16 19 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.24 -5.65 6.90 56.52 0.39 -5.26 16 21 C -0.14 -3.38 9.34 -38.44 -0.36 -3.74 16 22 N -0.53 -4.86 4.06 -226.69 -0.92 -5.78 16 23 C 0.05 0.47 4.64 -3.83 -0.02 0.45 16 24 C -0.11 -1.01 5.38 -26.65 -0.14 -1.15 16 25 C -0.09 -0.71 2.79 -90.50 -0.25 -0.96 16 26 C -0.15 -1.05 9.20 37.16 0.34 -0.71 16 27 C -0.11 -0.84 5.38 -26.65 -0.14 -0.99 16 28 C 0.05 0.43 5.01 -3.83 -0.02 0.41 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 31 H 0.06 0.42 6.63 -51.93 -0.34 0.08 16 32 H 0.06 0.81 6.53 -51.93 -0.34 0.47 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.41 5.66 6.11 -40.82 -0.25 5.41 16 35 H 0.10 1.60 6.38 -52.48 -0.33 1.27 16 36 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.10 2.40 4.64 -52.49 -0.24 2.15 16 38 H 0.29 6.86 8.30 -40.82 -0.34 6.52 16 39 H 0.11 2.86 7.64 -52.49 -0.40 2.46 16 40 H 0.08 0.91 6.11 -51.93 -0.32 0.59 16 41 H 0.03 0.30 6.63 -51.93 -0.34 -0.04 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 51 H 0.03 0.25 6.71 -51.93 -0.35 -0.09 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -28.81 388.73 -10.27 -39.08 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.35 Total: 7.51 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.23 Total: -18.62 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.47 Total: -37.62 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.42 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.81 -10.27 -39.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067270224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.344 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds