Wall clock time and date at job start Tue Mar 31 2020 16:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47009 * 2 1 4 4 C 1.52991 * 109.47143 * 240.00072 * 2 1 3 5 5 N 1.46504 * 109.47307 * 184.61084 * 4 2 1 6 6 C 1.34773 * 120.00162 * 183.91585 * 5 4 2 7 7 O 1.21544 * 120.00069 * 359.97438 * 6 5 4 8 8 C 1.47886 * 119.99818 * 179.97438 * 6 5 4 9 9 C 1.39914 * 120.02663 * 359.71957 * 8 6 5 10 10 C 1.38330 * 120.36160 * 179.74041 * 9 8 6 11 11 C 1.37753 * 120.41139 * 0.56277 * 10 9 8 12 12 C 1.40754 * 120.03662 * 359.69433 * 11 10 9 13 13 C 1.41436 * 120.17947 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00225 * 151.27249 * 13 12 11 15 15 C 1.39942 * 119.99911 * 331.27608 * 13 12 11 16 16 N 1.30824 * 120.00274 * 160.69497 * 15 13 12 17 17 Si 1.86807 * 119.99894 * 340.69712 * 15 13 12 18 18 H 1.48497 * 109.46851 * 95.16562 * 17 15 13 19 19 H 1.48502 * 109.46919 * 215.16088 * 17 15 13 20 20 H 1.48495 * 109.46912 * 335.16153 * 17 15 13 21 21 C 1.38999 * 120.02533 * 179.97438 * 8 6 5 22 22 N 1.46899 * 109.47100 * 119.99976 * 2 1 3 23 23 C 1.46847 * 110.99740 * 59.87596 * 22 2 1 24 24 C 1.53048 * 109.52048 * 174.16212 * 23 22 2 25 25 C 1.53115 * 109.27833 * 59.18072 * 24 23 22 26 26 C 1.52996 * 109.52229 * 182.44065 * 25 24 23 27 27 C 1.53117 * 109.16091 * 302.34660 * 25 24 23 28 28 C 1.46848 * 111.00058 * 295.67166 * 22 2 1 29 29 H 1.09005 * 109.47313 * 59.99675 * 1 2 3 30 30 H 1.09002 * 109.47521 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47269 * 299.99923 * 1 2 3 32 32 H 1.09002 * 109.47592 * 304.60854 * 4 2 1 33 33 H 1.09001 * 109.47372 * 64.61003 * 4 2 1 34 34 H 0.97004 * 119.99395 * 3.91027 * 5 4 2 35 35 H 1.08003 * 119.82290 * 0.02562 * 9 8 6 36 36 H 1.08004 * 119.79579 * 180.28116 * 10 9 8 37 37 H 1.07999 * 119.98229 * 179.71894 * 11 10 9 38 38 H 0.96995 * 120.00511 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.20311 * 359.95246 * 21 8 6 40 40 H 1.08997 * 109.46559 * 54.14831 * 23 22 2 41 41 H 1.09002 * 109.46517 * 294.17811 * 23 22 2 42 42 H 1.08995 * 109.50146 * 299.23631 * 24 23 22 43 43 H 1.08997 * 109.49758 * 179.12364 * 24 23 22 44 44 H 1.08997 * 109.52139 * 62.24905 * 25 24 23 45 45 H 1.08998 * 109.47535 * 59.99817 * 26 25 24 46 46 H 1.09002 * 109.47101 * 180.02562 * 26 25 24 47 47 H 1.09003 * 109.46999 * 300.00153 * 26 25 24 48 48 H 1.08999 * 109.50427 * 177.59830 * 27 25 24 49 49 H 1.09001 * 109.50198 * 297.71023 * 27 25 24 50 50 H 1.09006 * 109.45820 * 305.85507 * 28 22 2 51 51 H 1.09001 * 109.46685 * 65.81765 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5008 -0.8181 -1.1950 6 6 4.1799 -1.3478 -2.2316 7 8 3.5805 -1.7455 -3.2113 8 6 5.6546 -1.4451 -2.1770 9 6 6.3457 -0.9820 -1.0520 10 6 7.7245 -1.0745 -0.9914 11 6 8.4342 -1.6128 -2.0423 12 6 7.7567 -2.0789 -3.1846 13 6 8.4823 -2.6326 -4.2650 14 1 8.0244 -3.3792 -4.8969 15 6 9.7936 -2.2130 -4.5154 16 7 10.5909 -2.9552 -5.2399 17 14 10.4058 -0.5931 -3.8147 18 1 11.1113 -0.8436 -2.5323 19 1 11.3408 0.0411 -4.7784 20 1 9.2518 0.3108 -3.5767 21 6 6.3556 -1.9917 -3.2456 22 7 2.0196 -0.6925 1.1994 23 6 1.5463 -2.0821 1.2348 24 6 2.1910 -2.8121 2.4154 25 6 1.8216 -2.0941 3.7164 26 6 2.5126 -2.7832 4.8947 27 6 2.2824 -0.6363 3.6342 28 6 1.6351 0.0305 2.4184 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6108 -1.7223 -1.2915 33 1 1.7456 -0.1619 -2.1373 34 1 3.9792 -0.5009 -0.4130 35 1 5.7992 -0.5542 -0.2245 36 1 8.2484 -0.7184 -0.1166 37 1 9.5109 -1.6774 -1.9895 38 1 11.4999 -2.6646 -5.4131 39 1 5.8266 -2.3474 -4.1174 40 1 1.8192 -2.5825 0.3057 41 1 0.4623 -2.0939 1.3487 42 1 3.2743 -2.8128 2.2951 43 1 1.8276 -3.8391 2.4506 44 1 0.7411 -2.1272 3.8565 45 1 3.5929 -2.7468 4.7543 46 1 2.2487 -2.2718 5.8204 47 1 2.1882 -3.8225 4.9489 48 1 1.9843 -0.1088 4.5403 49 1 3.3672 -0.6027 3.5332 50 1 1.9724 1.0647 2.3488 51 1 0.5507 0.0090 2.5267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067270224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:13 Heat of formation + Delta-G solvation = -50.238279 kcal Electronic energy + Delta-G solvation = -28549.759689 eV Core-core repulsion = 24832.842516 eV Total energy + Delta-G solvation = -3716.917172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.18600 -40.35627 -38.99830 -37.10311 -35.59881 -34.89556 -32.65340 -31.90542 -31.72064 -31.51417 -28.09632 -27.78586 -26.82173 -24.40551 -24.25739 -23.38548 -22.44128 -21.54113 -21.33798 -20.16394 -19.48017 -18.08992 -17.44211 -17.23491 -17.13785 -16.44019 -15.93078 -15.80901 -15.60799 -15.43132 -15.33060 -15.28365 -14.82874 -14.55741 -14.40345 -14.21131 -13.93144 -13.80315 -13.65023 -13.36097 -13.27638 -13.13670 -12.82386 -12.70782 -12.67954 -12.57403 -12.38468 -12.29978 -12.15900 -11.74943 -11.66688 -11.53952 -11.50891 -11.17982 -11.09288 -11.04936 -10.80616 -10.09164 -9.61342 -9.52284 -9.19538 -8.91878 -6.54201 0.21651 0.76112 1.26010 1.42453 1.49385 1.98897 2.13963 2.26061 2.66934 2.94001 3.48160 3.69262 3.87216 3.91191 3.95247 3.99341 4.13708 4.27759 4.30486 4.39721 4.42009 4.45534 4.48374 4.58009 4.59966 4.65149 4.73077 4.79473 4.82764 4.86027 4.88547 4.91332 4.93814 4.97793 5.06212 5.07748 5.17691 5.21059 5.25673 5.32251 5.34278 5.37767 5.44277 5.49916 5.61238 5.68623 5.74600 5.85853 6.12881 6.15677 6.21926 6.31241 6.66103 6.70176 6.74972 7.31502 8.17235 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.002757 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.524581 B =10152.419838 C =10956.204138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.078 3.922 3 H 0.102 0.898 4 C 0.126 3.874 5 N -0.696 5.696 6 C 0.558 3.442 7 O -0.592 6.592 8 C -0.111 4.111 9 C -0.180 4.180 10 C -0.081 4.081 11 C -0.227 4.227 12 C 0.066 3.934 13 C -0.489 4.489 14 H 0.049 0.951 15 C 0.046 3.954 16 N -0.848 5.848 17 Si 0.968 3.032 18 H -0.246 1.246 19 H -0.277 1.277 20 H -0.252 1.252 21 C -0.169 4.169 22 N -0.537 5.537 23 C 0.053 3.947 24 C -0.111 4.111 25 C -0.089 4.089 26 C -0.145 4.145 27 C -0.109 4.109 28 C 0.056 3.944 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.418 0.582 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.295 0.705 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.078 0.922 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.596 9.079 21.972 29.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.031 4.031 3 H 0.120 0.880 4 C 0.002 3.998 5 N -0.348 5.348 6 C 0.347 3.653 7 O -0.475 6.475 8 C -0.114 4.114 9 C -0.200 4.200 10 C -0.099 4.099 11 C -0.247 4.247 12 C 0.064 3.936 13 C -0.518 4.518 14 H 0.067 0.933 15 C -0.169 4.169 16 N -0.474 5.474 17 Si 0.790 3.210 18 H -0.171 1.171 19 H -0.204 1.204 20 H -0.176 1.176 21 C -0.189 4.189 22 N -0.262 5.262 23 C -0.075 4.075 24 C -0.149 4.149 25 C -0.108 4.108 26 C -0.202 4.202 27 C -0.147 4.147 28 C -0.072 4.072 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.257 0.743 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.101 0.899 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.310 8.699 21.135 28.671 hybrid contribution -0.158 -0.167 -0.517 0.566 sum -17.468 8.532 20.618 28.338 Atomic orbital electron populations 1.22326 0.95154 1.02655 1.03579 1.21894 0.94318 0.98530 0.88352 0.88005 1.21501 0.79568 1.00453 0.98249 1.45603 1.07635 1.62121 1.19446 1.18612 0.87610 0.76655 0.82434 1.90675 1.71166 1.51016 1.34630 1.19718 0.91733 1.03327 0.96642 1.20964 0.94193 1.06999 0.97811 1.21024 0.94178 0.97024 0.97699 1.21374 0.99047 1.09110 0.95125 1.17762 0.91976 0.90950 0.92916 1.19459 0.97845 1.21658 1.12883 0.93295 1.26914 0.95188 1.01420 0.93365 1.69727 1.07752 1.37493 1.32448 0.85462 0.78917 0.77951 0.78635 1.17068 1.20368 1.17569 1.21176 0.93861 1.05587 0.98318 1.62087 1.59919 1.02072 1.02078 1.22088 0.97473 0.89149 0.98771 1.21630 1.00870 0.98482 0.93915 1.21142 0.99926 0.95321 0.94373 1.21794 1.00423 1.00296 0.97721 1.21635 1.00975 0.94822 0.97222 1.22142 0.98219 0.97939 0.88850 0.91126 0.92505 0.90650 0.92734 0.91658 0.74342 0.83727 0.83613 0.87588 0.89406 0.89455 0.92363 0.93968 0.92362 0.91700 0.91387 0.93096 0.91942 0.92860 0.90358 0.91833 0.89860 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.50 71.98 0.61 -1.55 16 2 C 0.08 1.18 2.53 44.91 0.11 1.30 16 3 H 0.10 1.39 8.09 -2.39 -0.02 1.37 16 4 C 0.13 2.90 4.68 86.38 0.40 3.31 16 5 N -0.70 -19.46 5.36 -465.94 -2.50 -21.96 16 6 C 0.56 21.95 7.77 86.80 0.67 22.62 16 7 O -0.59 -27.86 16.33 -3.85 -0.06 -27.92 16 8 C -0.11 -4.74 5.87 -20.13 -0.12 -4.86 16 9 C -0.18 -6.37 9.55 22.70 0.22 -6.16 16 10 C -0.08 -3.02 10.01 22.18 0.22 -2.80 16 11 C -0.23 -10.38 7.21 22.77 0.16 -10.22 16 12 C 0.07 3.51 5.12 -21.32 -0.11 3.40 16 13 C -0.49 -28.63 9.56 23.47 0.22 -28.41 16 14 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 15 C 0.05 2.49 5.39 85.26 0.46 2.95 16 16 N -0.85 -47.38 13.93 21.83 0.30 -47.07 16 17 Si 0.97 42.24 24.52 68.60 1.68 43.92 16 18 H -0.25 -9.73 6.67 99.48 0.66 -9.07 16 19 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.25 -11.20 6.90 99.48 0.69 -10.51 16 21 C -0.17 -8.65 9.34 23.01 0.21 -8.43 16 22 N -0.54 -8.20 4.06 -871.12 -3.53 -11.73 16 23 C 0.05 0.90 4.64 86.33 0.40 1.30 16 24 C -0.11 -1.80 5.38 30.65 0.16 -1.64 16 25 C -0.09 -1.13 2.79 -10.72 -0.03 -1.16 16 26 C -0.14 -1.74 9.20 71.98 0.66 -1.08 16 27 C -0.11 -1.26 5.38 30.64 0.16 -1.10 16 28 C 0.06 0.65 5.01 86.32 0.43 1.08 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.80 16 30 H 0.06 0.76 6.54 -2.39 -0.02 0.74 16 31 H 0.07 0.74 6.63 -2.39 -0.02 0.73 16 32 H 0.05 1.38 6.53 -2.39 -0.02 1.36 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.42 9.94 6.11 -92.71 -0.57 9.37 16 35 H 0.15 3.81 6.38 -2.91 -0.02 3.79 16 36 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 37 H 0.11 4.75 4.64 -2.91 -0.01 4.73 16 38 H 0.30 14.67 8.30 -92.71 -0.77 13.90 16 39 H 0.09 4.81 7.64 -2.91 -0.02 4.78 16 40 H 0.06 1.25 6.11 -2.39 -0.01 1.24 16 41 H 0.04 0.65 6.63 -2.39 -0.02 0.63 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.08 0.85 8.08 -2.38 -0.02 0.83 16 51 H 0.04 0.44 6.71 -2.39 -0.02 0.43 16 Total: -1.00 -67.64 388.73 1.06 -66.58 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.29 Total: 29.61 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 4.87 Total: -31.43 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -5.73 Total: -80.76 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.06 Total: -27.92 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.68 Total: 43.92 kcal Total: -67.64 1.06 -66.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067270224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.340 kcal (2) G-P(sol) polarization free energy of solvation -67.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds