Wall clock time and date at job start Tue Mar 31 2020 15:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.34457 * 125.45940 * 2 1 4 4 C 1.46720 * 106.39085 * 180.26891 * 3 2 1 5 5 C 1.47174 * 127.01841 * 179.70304 * 4 3 2 6 6 O 1.21655 * 120.00397 * 183.81817 * 5 4 3 7 7 N 1.34780 * 120.00227 * 3.81690 * 5 4 3 8 8 C 1.36980 * 119.99880 * 354.22335 * 7 5 4 9 9 H 1.07995 * 119.99863 * 302.39024 * 8 7 5 10 10 C 1.38972 * 119.99765 * 122.39182 * 8 7 5 11 11 N 1.31420 * 120.00229 * 358.19117 * 10 8 7 12 12 Si 1.86797 * 119.99602 * 178.19797 * 10 8 7 13 13 H 1.48490 * 109.47498 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47333 * 120.00045 * 12 10 8 15 15 H 1.48497 * 109.47064 * 239.99538 * 12 10 8 16 16 C 1.46499 * 120.00180 * 174.21946 * 7 5 4 17 17 C 1.53003 * 117.49991 * 181.64462 * 16 7 5 18 18 C 1.53000 * 59.99983 * 252.51025 * 17 16 7 19 19 C 1.37840 * 105.95812 * 359.73463 * 4 3 2 20 20 C 1.50704 * 125.89221 * 180.02562 * 19 4 3 21 21 N 1.34702 * 108.20101 * 0.02562 * 19 4 3 22 22 C 1.46502 * 124.81310 * 179.97438 * 21 19 4 23 23 C 1.52991 * 109.47463 * 307.73140 * 22 21 19 24 24 C 1.53004 * 109.47066 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47189 * 299.99857 * 24 23 22 26 26 C 1.53005 * 109.46858 * 60.00171 * 25 24 23 27 27 C 1.52997 * 109.46964 * 299.99647 * 26 25 24 28 28 H 1.09003 * 109.47697 * 274.84899 * 1 2 3 29 29 H 1.09001 * 109.47313 * 34.84718 * 1 2 3 30 30 H 1.08995 * 109.47555 * 154.84791 * 1 2 3 31 31 H 1.07999 * 126.80412 * 359.96792 * 3 2 1 32 32 H 0.97002 * 119.99758 * 185.01076 * 11 10 8 33 33 H 1.08996 * 115.55187 * 327.35485 * 16 7 5 34 34 H 1.09001 * 117.49348 * 0.02562 * 17 16 7 35 35 H 1.08998 * 117.49880 * 145.02040 * 17 16 7 36 36 H 1.08997 * 117.49898 * 252.50727 * 18 17 16 37 37 H 1.09005 * 117.49299 * 107.48940 * 18 17 16 38 38 H 1.09003 * 109.47213 * 275.39753 * 20 19 4 39 39 H 1.08993 * 109.47438 * 35.40260 * 20 19 4 40 40 H 1.09008 * 109.46647 * 155.40407 * 20 19 4 41 41 H 1.09001 * 109.46469 * 187.73034 * 22 21 19 42 42 H 1.09001 * 109.47364 * 60.00443 * 23 22 21 43 43 H 1.09003 * 109.47506 * 300.00454 * 23 22 21 44 44 H 1.08994 * 109.47169 * 60.00456 * 24 23 22 45 45 H 1.09006 * 109.46659 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47100 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.47100 * 300.00162 * 25 24 23 48 48 H 1.08996 * 109.47036 * 179.97438 * 26 25 24 49 49 H 1.08997 * 109.47273 * 60.00096 * 26 25 24 50 50 H 1.08997 * 109.47492 * 300.00314 * 27 26 25 51 51 H 1.09003 * 109.47124 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2869 1.0952 0.0000 4 6 3.6736 0.6159 -0.0066 5 6 4.8949 1.4370 -0.0151 6 8 5.9859 0.9039 -0.0901 7 7 4.8049 2.7797 0.0601 8 6 3.5774 3.3868 0.0252 9 1 2.9188 3.2252 -0.8152 10 6 3.1798 4.2107 1.0713 11 7 3.9663 4.3792 2.1106 12 14 1.5271 5.0785 1.0003 13 1 0.8370 4.7261 -0.2664 14 1 0.6942 4.6523 2.1535 15 1 1.7366 6.5475 1.0572 16 6 6.0196 3.5898 0.1794 17 6 5.8490 5.1056 0.2994 18 6 6.3827 4.4962 -0.9985 19 6 3.5988 -0.7605 -0.0039 20 6 4.7700 -1.7090 -0.0081 21 7 2.2983 -1.1112 0.0030 22 6 1.8039 -2.4903 0.0072 23 6 2.4570 -3.2697 -1.1359 24 6 1.9401 -4.7098 -1.1318 25 6 2.2887 -5.3730 0.2022 26 6 1.6356 -4.5935 1.3453 27 6 2.1525 -3.1535 1.3413 28 1 -0.3634 0.0869 1.0240 29 1 -0.3634 0.8434 -0.5872 30 1 -0.3634 -0.9302 -0.4367 31 1 1.9579 2.1238 -0.0005 32 1 3.6593 4.8950 2.8726 33 1 6.8390 3.1300 0.7318 34 1 4.8328 5.4998 0.2901 35 1 6.5561 5.6431 0.9311 36 1 7.4410 4.6330 -1.2208 37 1 5.7177 4.4898 -1.8622 38 1 5.1082 -1.8642 -1.0326 39 1 5.5824 -1.2857 0.5826 40 1 4.4662 -2.6631 0.4228 41 1 0.7220 -2.4887 -0.1256 42 1 3.5389 -3.2713 -1.0030 43 1 2.2083 -2.7975 -2.0863 44 1 0.8583 -4.7079 -1.2649 45 1 2.4051 -5.2650 -1.9465 46 1 1.9201 -6.3988 0.2052 47 1 3.3706 -5.3749 0.3352 48 1 1.8836 -5.0662 2.2956 49 1 0.5538 -4.5917 1.2123 50 1 3.2343 -3.1554 1.4743 51 1 1.6868 -2.5980 2.1554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230960.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:33 Heat of formation + Delta-G solvation = 36.612217 kcal Electronic energy + Delta-G solvation = -30054.856398 eV Core-core repulsion = 26341.705346 eV Total energy + Delta-G solvation = -3713.151052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.04823 -38.50515 -37.76328 -35.74489 -33.18850 -32.32035 -31.91577 -31.07227 -30.98329 -28.80300 -27.98439 -25.16177 -24.19914 -22.88455 -22.81536 -21.48578 -21.08109 -20.36444 -19.52046 -19.11267 -17.98460 -16.30467 -16.13883 -15.56653 -15.04521 -14.74897 -14.70892 -14.44175 -14.33059 -13.93385 -13.65819 -13.53124 -13.03915 -12.90043 -12.82335 -12.66504 -12.54292 -12.37565 -12.23696 -11.97380 -11.92708 -11.66684 -11.53858 -11.40330 -11.22859 -11.08286 -11.05464 -10.91953 -10.60867 -10.50872 -10.33183 -10.27175 -10.20020 -10.15074 -9.43764 -9.09519 -8.57415 -8.31296 -7.64258 -7.20005 -6.85747 -6.19412 -4.07898 2.67444 3.15311 3.24332 3.26456 3.31308 3.35935 4.15201 4.42087 4.54577 4.68278 4.78373 4.84538 4.98155 5.01049 5.04099 5.09426 5.25139 5.26061 5.26916 5.40186 5.43935 5.50023 5.56296 5.62733 5.69293 5.80196 5.83043 5.84991 5.90200 5.96402 6.00110 6.09220 6.12082 6.16378 6.19157 6.25191 6.34549 6.38109 6.53418 6.63789 6.65020 6.67625 6.95030 7.02613 7.15722 7.31254 7.53148 7.56459 7.80754 7.98161 8.05371 8.32261 8.53513 9.20220 9.74324 10.18330 10.82117 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.004025 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.898964 B = 6955.094834 C = 8089.823803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.036 4.036 3 C -0.128 4.128 4 C -0.184 4.184 5 C 0.561 3.439 6 O -0.610 6.610 7 N -0.416 5.416 8 C -0.330 4.330 9 H 0.085 0.915 10 C 0.055 3.945 11 N -0.851 5.851 12 Si 0.895 3.105 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.280 1.280 16 C 0.116 3.884 17 C -0.137 4.137 18 C -0.223 4.223 19 C 0.069 3.931 20 C -0.081 4.081 21 N -0.437 5.437 22 C 0.137 3.863 23 C -0.140 4.140 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.135 4.135 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.168 0.832 32 H 0.266 0.734 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.062 0.938 50 H 0.077 0.923 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 -14.096 -2.826 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.142 4.142 3 C -0.152 4.152 4 C -0.193 4.193 5 C 0.353 3.647 6 O -0.498 6.498 7 N -0.133 5.133 8 C -0.459 4.459 9 H 0.103 0.897 10 C -0.152 4.152 11 N -0.485 5.485 12 Si 0.721 3.279 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.206 1.206 16 C 0.010 3.990 17 C -0.175 4.175 18 C -0.263 4.263 19 C -0.045 4.045 20 C -0.138 4.138 21 N -0.115 5.115 22 C 0.034 3.966 23 C -0.178 4.178 24 C -0.152 4.152 25 C -0.160 4.160 26 C -0.153 4.153 27 C -0.173 4.173 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.185 0.815 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.095 0.905 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.847 -14.458 -2.684 16.221 hybrid contribution -1.003 0.696 0.228 1.242 sum -7.850 -13.762 -2.456 16.033 Atomic orbital electron populations 1.20188 0.89278 1.01812 1.01874 1.20222 0.92870 0.86009 1.15064 1.22910 0.90956 0.98116 1.03175 1.20383 0.93875 0.90712 1.14367 1.17580 0.86787 0.82182 0.78111 1.90558 1.29223 1.73210 1.56760 1.42482 1.04386 1.02441 1.63997 1.19243 0.93351 1.28079 1.05220 0.89746 1.25578 0.97488 0.96971 0.95136 1.69979 1.35033 1.38104 1.05399 0.86371 0.83218 0.79536 0.78769 1.18923 1.20402 1.20567 1.21106 0.89992 0.89352 0.98512 1.22891 1.02159 0.95981 0.96451 1.23355 0.99435 1.09391 0.94072 1.20266 0.84026 0.94041 1.06214 1.20546 0.94945 0.95688 1.02634 1.43437 1.05001 1.04799 1.58243 1.21293 0.99392 0.80018 0.95905 1.22127 1.02413 0.95155 0.98116 1.21490 1.01054 0.95083 0.97608 1.21586 1.01079 0.98780 0.94573 1.21494 1.00284 0.94708 0.98792 1.22045 1.02832 0.95752 0.96706 0.91952 0.90756 0.92944 0.81527 0.92375 0.88500 0.87282 0.91054 0.90759 0.89836 0.91515 0.89134 0.92580 0.89011 0.89835 0.91291 0.91967 0.91498 0.91876 0.91688 0.91517 0.91907 0.90497 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.03 36.00 0.36 -0.66 16 2 C -0.04 -0.64 6.84 -81.89 -0.56 -1.20 16 3 C -0.13 -2.78 9.26 -37.49 -0.35 -3.13 16 4 C -0.18 -4.33 6.19 -102.99 -0.64 -4.97 16 5 C 0.56 14.95 7.62 -12.63 -0.10 14.86 16 6 O -0.61 -16.92 14.92 5.23 0.08 -16.84 16 7 N -0.42 -11.02 2.71 -109.02 -0.29 -11.32 16 8 C -0.33 -8.45 5.40 -14.98 -0.08 -8.53 16 9 H 0.09 2.14 6.30 -52.49 -0.33 1.81 16 10 C 0.06 1.39 3.66 -17.46 -0.06 1.33 16 11 N -0.85 -22.56 11.17 55.50 0.62 -21.94 16 12 Si 0.90 19.22 29.08 -169.99 -4.94 14.27 16 13 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 16 C 0.12 2.91 5.51 -67.93 -0.37 2.53 16 17 C -0.14 -3.16 8.28 -26.73 -0.22 -3.38 16 18 C -0.22 -4.88 10.38 -26.73 -0.28 -5.16 16 19 C 0.07 1.37 6.44 -81.48 -0.52 0.85 16 20 C -0.08 -1.39 7.73 36.01 0.28 -1.11 16 21 N -0.44 -7.35 2.58 -100.66 -0.26 -7.61 16 22 C 0.14 1.70 2.58 -67.93 -0.18 1.52 16 23 C -0.14 -1.55 5.03 -26.73 -0.13 -1.69 16 24 C -0.11 -0.96 5.92 -26.73 -0.16 -1.11 16 25 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 26 C -0.11 -0.98 5.92 -26.73 -0.16 -1.14 16 27 C -0.14 -1.54 5.25 -26.73 -0.14 -1.68 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.60 6.67 -51.93 -0.35 0.25 16 31 H 0.17 3.79 4.50 -52.49 -0.24 3.55 16 32 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 33 H 0.10 2.51 7.90 -51.93 -0.41 2.10 16 34 H 0.11 2.70 5.45 -51.93 -0.28 2.42 16 35 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 38 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 39 H 0.09 1.77 6.90 -51.93 -0.36 1.41 16 40 H 0.06 0.78 4.23 -51.92 -0.22 0.56 16 41 H 0.09 1.04 6.36 -51.93 -0.33 0.71 16 42 H 0.08 0.99 4.79 -51.93 -0.25 0.74 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 0.95 5.61 -51.93 -0.29 0.66 16 51 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -30.16 380.53 -10.63 -40.79 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -8.10 Total: 10.72 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.47 Total: -13.81 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.07 Total: -40.87 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.08 Total: -16.84 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.94 Total: 14.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.16 -10.63 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230960.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.404 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds