Wall clock time and date at job start Tue Mar 31 2020 15:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.34457 * 125.45940 * 2 1 4 4 C 1.46720 * 106.39085 * 180.26891 * 3 2 1 5 5 C 1.47174 * 127.01841 * 179.70304 * 4 3 2 6 6 O 1.21655 * 120.00397 * 183.81817 * 5 4 3 7 7 N 1.34780 * 120.00227 * 3.81690 * 5 4 3 8 8 C 1.36980 * 119.99880 * 354.22335 * 7 5 4 9 9 H 1.07995 * 119.99863 * 302.39024 * 8 7 5 10 10 C 1.38972 * 119.99765 * 122.39182 * 8 7 5 11 11 N 1.31420 * 120.00229 * 358.19117 * 10 8 7 12 12 Si 1.86797 * 119.99602 * 178.19797 * 10 8 7 13 13 H 1.48490 * 109.47498 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47333 * 120.00045 * 12 10 8 15 15 H 1.48497 * 109.47064 * 239.99538 * 12 10 8 16 16 C 1.46499 * 120.00180 * 174.21946 * 7 5 4 17 17 C 1.53003 * 117.49991 * 181.64462 * 16 7 5 18 18 C 1.53000 * 59.99983 * 252.51025 * 17 16 7 19 19 C 1.37840 * 105.95812 * 359.73463 * 4 3 2 20 20 C 1.50704 * 125.89221 * 180.02562 * 19 4 3 21 21 N 1.34702 * 108.20101 * 0.02562 * 19 4 3 22 22 C 1.46502 * 124.81310 * 179.97438 * 21 19 4 23 23 C 1.52991 * 109.47463 * 307.73140 * 22 21 19 24 24 C 1.53004 * 109.47066 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47189 * 299.99857 * 24 23 22 26 26 C 1.53005 * 109.46858 * 60.00171 * 25 24 23 27 27 C 1.52997 * 109.46964 * 299.99647 * 26 25 24 28 28 H 1.09003 * 109.47697 * 274.84899 * 1 2 3 29 29 H 1.09001 * 109.47313 * 34.84718 * 1 2 3 30 30 H 1.08995 * 109.47555 * 154.84791 * 1 2 3 31 31 H 1.07999 * 126.80412 * 359.96792 * 3 2 1 32 32 H 0.97002 * 119.99758 * 185.01076 * 11 10 8 33 33 H 1.08996 * 115.55187 * 327.35485 * 16 7 5 34 34 H 1.09001 * 117.49348 * 0.02562 * 17 16 7 35 35 H 1.08998 * 117.49880 * 145.02040 * 17 16 7 36 36 H 1.08997 * 117.49898 * 252.50727 * 18 17 16 37 37 H 1.09005 * 117.49299 * 107.48940 * 18 17 16 38 38 H 1.09003 * 109.47213 * 275.39753 * 20 19 4 39 39 H 1.08993 * 109.47438 * 35.40260 * 20 19 4 40 40 H 1.09008 * 109.46647 * 155.40407 * 20 19 4 41 41 H 1.09001 * 109.46469 * 187.73034 * 22 21 19 42 42 H 1.09001 * 109.47364 * 60.00443 * 23 22 21 43 43 H 1.09003 * 109.47506 * 300.00454 * 23 22 21 44 44 H 1.08994 * 109.47169 * 60.00456 * 24 23 22 45 45 H 1.09006 * 109.46659 * 179.97438 * 24 23 22 46 46 H 1.08998 * 109.47100 * 179.97438 * 25 24 23 47 47 H 1.08997 * 109.47100 * 300.00162 * 25 24 23 48 48 H 1.08996 * 109.47036 * 179.97438 * 26 25 24 49 49 H 1.08997 * 109.47273 * 60.00096 * 26 25 24 50 50 H 1.08997 * 109.47492 * 300.00314 * 27 26 25 51 51 H 1.09003 * 109.47124 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2869 1.0952 0.0000 4 6 3.6736 0.6159 -0.0066 5 6 4.8949 1.4370 -0.0151 6 8 5.9859 0.9039 -0.0901 7 7 4.8049 2.7797 0.0601 8 6 3.5774 3.3868 0.0252 9 1 2.9188 3.2252 -0.8152 10 6 3.1798 4.2107 1.0713 11 7 3.9663 4.3792 2.1106 12 14 1.5271 5.0785 1.0003 13 1 0.8370 4.7261 -0.2664 14 1 0.6942 4.6523 2.1535 15 1 1.7366 6.5475 1.0572 16 6 6.0196 3.5898 0.1794 17 6 5.8490 5.1056 0.2994 18 6 6.3827 4.4962 -0.9985 19 6 3.5988 -0.7605 -0.0039 20 6 4.7700 -1.7090 -0.0081 21 7 2.2983 -1.1112 0.0030 22 6 1.8039 -2.4903 0.0072 23 6 2.4570 -3.2697 -1.1359 24 6 1.9401 -4.7098 -1.1318 25 6 2.2887 -5.3730 0.2022 26 6 1.6356 -4.5935 1.3453 27 6 2.1525 -3.1535 1.3413 28 1 -0.3634 0.0869 1.0240 29 1 -0.3634 0.8434 -0.5872 30 1 -0.3634 -0.9302 -0.4367 31 1 1.9579 2.1238 -0.0005 32 1 3.6593 4.8950 2.8726 33 1 6.8390 3.1300 0.7318 34 1 4.8328 5.4998 0.2901 35 1 6.5561 5.6431 0.9311 36 1 7.4410 4.6330 -1.2208 37 1 5.7177 4.4898 -1.8622 38 1 5.1082 -1.8642 -1.0326 39 1 5.5824 -1.2857 0.5826 40 1 4.4662 -2.6631 0.4228 41 1 0.7220 -2.4887 -0.1256 42 1 3.5389 -3.2713 -1.0030 43 1 2.2083 -2.7975 -2.0863 44 1 0.8583 -4.7079 -1.2649 45 1 2.4051 -5.2650 -1.9465 46 1 1.9201 -6.3988 0.2052 47 1 3.3706 -5.3749 0.3352 48 1 1.8836 -5.0662 2.2956 49 1 0.5538 -4.5917 1.2123 50 1 3.2343 -3.1554 1.4743 51 1 1.6868 -2.5980 2.1554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068230960.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:32 Heat of formation + Delta-G solvation = 22.292093 kcal Electronic energy + Delta-G solvation = -30055.477365 eV Core-core repulsion = 26341.705346 eV Total energy + Delta-G solvation = -3713.772019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.44115 -40.24982 -38.88594 -37.69414 -35.03651 -33.65699 -33.31876 -32.91701 -31.76149 -30.06035 -29.25162 -27.11520 -25.76332 -24.15646 -23.58884 -22.97826 -22.80541 -21.82554 -21.04614 -20.46808 -19.59618 -18.02411 -17.74786 -16.93296 -16.79733 -16.19398 -16.09210 -15.64563 -15.40032 -15.22745 -15.16039 -14.85392 -14.63998 -14.34698 -14.23436 -14.00615 -13.80894 -13.61165 -13.44128 -13.38471 -13.18635 -13.15494 -13.00322 -12.79666 -12.57435 -12.52369 -12.37838 -12.12538 -12.00720 -11.97201 -11.86959 -11.42643 -11.32696 -11.17153 -11.10663 -11.01197 -10.51604 -10.28681 -9.25145 -8.94872 -8.59581 -8.13206 -6.07758 1.04205 1.44189 1.46767 1.57818 1.73506 2.01309 2.34112 2.88297 3.09733 3.12686 3.52390 3.54599 3.72861 3.80856 4.02811 4.09607 4.14841 4.21606 4.26394 4.27538 4.32227 4.44719 4.49341 4.50411 4.53135 4.54108 4.62320 4.68530 4.75595 4.83081 4.86433 4.88593 4.93951 5.05467 5.07293 5.11332 5.15356 5.17980 5.20636 5.23691 5.31366 5.33753 5.35873 5.43002 5.51606 5.54082 5.61516 5.66434 6.18890 6.34299 6.41817 6.56595 6.67294 7.22970 7.75420 8.20634 8.88921 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.004025 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.898964 B = 6955.094834 C = 8089.823803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.017 4.017 3 C -0.166 4.166 4 C -0.238 4.238 5 C 0.540 3.460 6 O -0.640 6.640 7 N -0.427 5.427 8 C -0.333 4.333 9 H 0.081 0.919 10 C 0.022 3.978 11 N -0.884 5.884 12 Si 0.959 3.041 13 H -0.253 1.253 14 H -0.277 1.277 15 H -0.278 1.278 16 C 0.079 3.921 17 C -0.125 4.125 18 C -0.195 4.195 19 C 0.076 3.924 20 C -0.072 4.072 21 N -0.425 5.425 22 C 0.129 3.871 23 C -0.138 4.138 24 C -0.108 4.108 25 C -0.122 4.122 26 C -0.108 4.108 27 C -0.133 4.133 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.266 0.734 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.062 0.938 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 -16.109 -3.460 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.125 4.125 3 C -0.189 4.189 4 C -0.248 4.248 5 C 0.334 3.666 6 O -0.530 6.530 7 N -0.143 5.143 8 C -0.461 4.461 9 H 0.098 0.902 10 C -0.182 4.182 11 N -0.520 5.520 12 Si 0.782 3.218 13 H -0.176 1.176 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.026 4.026 17 C -0.162 4.162 18 C -0.234 4.234 19 C -0.041 4.041 20 C -0.129 4.129 21 N -0.101 5.101 22 C 0.028 3.972 23 C -0.176 4.176 24 C -0.146 4.146 25 C -0.159 4.159 26 C -0.146 4.146 27 C -0.171 4.171 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.132 0.868 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.080 0.920 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.663 -16.484 -3.333 19.396 hybrid contribution -0.117 1.230 0.426 1.307 sum -9.780 -15.254 -2.906 18.352 Atomic orbital electron populations 1.20334 0.85653 1.03863 1.03149 1.20742 0.94877 0.85241 1.11658 1.22733 0.90898 0.98751 1.06555 1.20454 0.93643 0.92390 1.18299 1.18242 0.87747 0.82689 0.77912 1.90493 1.30425 1.73693 1.58410 1.42704 1.05031 1.02740 1.63874 1.19313 0.93244 1.28051 1.05485 0.90157 1.26211 1.00570 0.97113 0.94314 1.70105 1.36764 1.39030 1.06079 0.85396 0.79131 0.78158 0.79122 1.17622 1.20273 1.20323 1.21192 0.89787 0.90344 1.01292 1.22775 1.01724 0.94308 0.97443 1.23354 1.01013 1.06154 0.92901 1.20461 0.85914 0.93187 1.04588 1.20497 0.93244 0.96462 1.02679 1.43758 1.03814 1.06630 1.55933 1.21747 1.00668 0.77493 0.97258 1.22114 1.01695 0.96905 0.96899 1.21475 1.01893 0.92868 0.98319 1.21601 1.00811 0.99675 0.93851 1.21478 1.01083 0.92394 0.99640 1.22024 1.01914 0.97699 0.95468 0.90717 0.90019 0.89834 0.83159 0.92402 0.90534 0.88910 0.89566 0.87806 0.90150 0.90955 0.92145 0.89164 0.86784 0.91003 0.92116 0.90545 0.90474 0.89892 0.92276 0.90690 0.90423 0.91983 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.78 10.03 71.23 0.71 -1.06 16 2 C -0.02 -0.61 6.84 40.98 0.28 -0.33 16 3 C -0.17 -7.43 9.26 23.62 0.22 -7.22 16 4 C -0.24 -11.80 6.19 -18.81 -0.12 -11.92 16 5 C 0.54 30.66 7.62 86.59 0.66 31.32 16 6 O -0.64 -37.96 14.92 -4.21 -0.06 -38.03 16 7 N -0.43 -23.86 2.71 -617.05 -1.67 -25.53 16 8 C -0.33 -17.71 5.40 84.06 0.45 -17.26 16 9 H 0.08 4.26 6.30 -2.91 -0.02 4.24 16 10 C 0.02 1.13 3.66 84.93 0.31 1.44 16 11 N -0.88 -48.41 11.17 21.67 0.24 -48.17 16 12 Si 0.96 39.91 29.08 68.60 2.00 41.91 16 13 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 14 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 16 C 0.08 4.16 5.51 44.99 0.25 4.40 16 17 C -0.12 -5.86 8.28 30.60 0.25 -5.61 16 18 C -0.20 -8.61 10.38 30.59 0.32 -8.29 16 19 C 0.08 3.07 6.44 42.03 0.27 3.34 16 20 C -0.07 -2.53 7.73 71.24 0.55 -1.98 16 21 N -0.42 -13.89 2.58 -472.37 -1.22 -15.11 16 22 C 0.13 2.87 2.58 44.99 0.12 2.98 16 23 C -0.14 -2.71 5.03 30.59 0.15 -2.56 16 24 C -0.11 -1.38 5.92 30.59 0.18 -1.20 16 25 C -0.12 -1.46 5.92 30.60 0.18 -1.28 16 26 C -0.11 -1.44 5.92 30.59 0.18 -1.26 16 27 C -0.13 -2.72 5.25 30.59 0.16 -2.56 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.53 6.67 -2.39 -0.02 1.51 16 31 H 0.15 7.08 4.50 -2.91 -0.01 7.07 16 32 H 0.27 13.83 8.32 -92.71 -0.77 13.06 16 33 H 0.08 4.24 7.90 -2.39 -0.02 4.23 16 34 H 0.09 4.69 5.45 -2.39 -0.01 4.67 16 35 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 36 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 37 H 0.08 3.58 8.14 -2.38 -0.02 3.56 16 38 H 0.07 2.44 7.93 -2.39 -0.02 2.42 16 39 H 0.06 2.51 6.90 -2.39 -0.02 2.49 16 40 H 0.09 2.48 4.23 -2.38 -0.01 2.47 16 41 H 0.11 2.08 6.36 -2.39 -0.02 2.07 16 42 H 0.07 1.58 4.79 -2.39 -0.01 1.57 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.06 1.45 5.61 -2.39 -0.01 1.43 16 51 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -70.48 380.53 5.36 -65.12 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.93 Total: 38.83 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 5.14 Total: -19.03 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -2.64 Total: -88.80 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.06 Total: -38.03 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.00 Total: 41.91 kcal Total: -70.48 5.36 -65.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230960.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.412 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds