Wall clock time and date at job start Tue Mar 31 2020 16:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46613 * 2 1 4 4 C 1.50699 * 109.47202 * 119.99783 * 2 1 3 5 5 O 1.21283 * 120.00074 * 93.79344 * 4 2 1 6 6 N 1.34782 * 119.99939 * 273.78629 * 4 2 1 7 7 C 1.46491 * 119.99946 * 4.47068 * 6 4 2 8 8 C 1.50702 * 109.47467 * 264.23645 * 7 6 4 9 9 H 1.08006 * 119.99344 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00301 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00261 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99823 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47284 * 89.99750 * 12 10 8 14 14 H 1.48502 * 109.46730 * 209.99821 * 12 10 8 15 15 H 1.48493 * 109.47080 * 329.99594 * 12 10 8 16 16 C 1.39922 * 119.99615 * 184.46452 * 6 4 2 17 17 C 1.38874 * 120.06805 * 170.39169 * 16 6 4 18 18 C 1.38111 * 119.92979 * 179.97438 * 17 16 6 19 19 C 1.38283 * 120.06961 * 359.97438 * 18 17 16 20 20 C 1.38279 * 120.14148 * 0.03811 * 19 18 17 21 21 C 1.38115 * 120.07191 * 359.96061 * 20 19 18 22 22 N 1.46897 * 109.47096 * 240.00235 * 2 1 3 23 23 C 1.46847 * 110.99889 * 314.38313 * 22 2 1 24 24 C 1.53037 * 109.52390 * 185.84052 * 23 22 2 25 25 C 1.53121 * 109.27959 * 300.82256 * 24 23 22 26 26 C 1.53002 * 109.52420 * 177.55535 * 25 24 23 27 27 C 1.53118 * 109.15898 * 57.65376 * 25 24 23 28 28 C 1.46843 * 111.00510 * 78.59693 * 22 2 1 29 29 H 1.08995 * 109.47564 * 65.62461 * 1 2 3 30 30 H 1.09010 * 109.46541 * 185.61966 * 1 2 3 31 31 H 1.08997 * 109.46802 * 305.61609 * 1 2 3 32 32 H 1.09005 * 109.47368 * 24.23750 * 7 6 4 33 33 H 1.09003 * 109.47370 * 144.23352 * 7 6 4 34 34 H 0.97000 * 120.00162 * 180.02562 * 11 10 8 35 35 H 1.08004 * 120.03547 * 359.71047 * 17 16 6 36 36 H 1.08004 * 119.96442 * 179.97438 * 18 17 16 37 37 H 1.07997 * 119.92636 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.96105 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.03299 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.46252 * 305.85732 * 23 22 2 41 41 H 1.09002 * 109.46294 * 65.83101 * 23 22 2 42 42 H 1.08996 * 109.50705 * 180.88084 * 24 23 22 43 43 H 1.09002 * 109.50231 * 60.76255 * 24 23 22 44 44 H 1.08996 * 109.52427 * 297.74906 * 25 24 23 45 45 H 1.09000 * 109.47083 * 300.32031 * 26 25 24 46 46 H 1.09002 * 109.46505 * 60.31709 * 26 25 24 47 47 H 1.08996 * 109.47101 * 180.31910 * 26 25 24 48 48 H 1.09004 * 109.50923 * 182.40328 * 27 25 24 49 49 H 1.09003 * 109.50705 * 62.28968 * 27 25 24 50 50 H 1.09006 * 109.46183 * 294.18033 * 28 22 2 51 51 H 1.09007 * 109.46205 * 54.13970 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3000 -1.8923 1.1816 6 7 2.1843 -0.0322 2.3853 7 6 1.7694 1.3701 2.4712 8 6 2.9596 2.2621 2.2282 9 1 3.9282 1.8276 2.0292 10 6 2.8120 3.6325 2.2600 11 7 1.6325 4.1614 2.5018 12 14 4.2872 4.7380 1.9580 13 1 4.3964 5.0323 0.5066 14 1 4.1162 6.0076 2.7091 15 1 5.5216 4.0529 2.4184 16 6 2.7383 -0.6676 3.5020 17 6 3.0804 0.0732 4.6257 18 6 3.6266 -0.5570 5.7266 19 6 3.8324 -1.9244 5.7110 20 6 3.4931 -2.6648 4.5935 21 6 2.9465 -2.0406 3.4894 22 7 2.0197 -0.6924 -1.1994 23 6 1.2910 -1.9488 -1.4161 24 6 1.9217 -2.7111 -2.5836 25 6 1.8654 -1.8428 -3.8436 26 6 2.5491 -2.5750 -5.0001 27 6 2.5896 -0.5207 -3.5756 28 6 1.9396 0.1781 -2.3793 29 1 -0.3634 0.4241 -0.9360 30 1 -0.3633 -1.0229 0.1006 31 1 -0.3633 0.5985 0.8354 32 1 1.0060 1.5699 1.7192 33 1 1.3630 1.5687 3.4630 34 1 1.5286 5.1256 2.5238 35 1 2.9235 1.1418 4.6371 36 1 3.8932 0.0187 6.6007 37 1 4.2600 -2.4148 6.5729 38 1 3.6554 -3.7325 4.5843 39 1 2.6813 -2.6196 2.6171 40 1 1.3424 -2.5586 -0.5141 41 1 0.2486 -1.7290 -1.6468 42 1 1.3711 -3.6361 -2.7542 43 1 2.9603 -2.9434 -2.3479 44 1 0.8255 -1.6427 -4.1019 45 1 3.5879 -2.7767 -4.7389 46 1 2.0328 -3.5160 -5.1901 47 1 2.5135 -1.9538 -5.8951 48 1 2.5162 0.1194 -4.4549 49 1 3.6387 -0.7184 -3.3555 50 1 0.8941 0.3881 -2.6054 51 1 2.4620 1.1131 -2.1769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070943483.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:30 Heat of formation + Delta-G solvation = 0.290800 kcal Electronic energy + Delta-G solvation = -29819.943561 eV Core-core repulsion = 26105.217494 eV Total energy + Delta-G solvation = -3714.726067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48524 -39.03830 -37.57330 -35.26025 -34.96579 -32.70912 -30.97118 -30.60463 -30.23316 -29.05879 -27.30380 -27.10850 -24.43302 -23.29366 -23.04238 -22.30602 -21.63368 -20.80142 -19.39601 -18.66216 -16.94963 -16.77733 -16.29935 -15.74543 -15.26950 -14.82730 -14.66927 -14.51416 -14.43433 -14.28801 -13.98233 -13.59153 -13.49203 -13.07644 -12.84947 -12.69928 -12.56700 -12.31358 -12.22484 -12.19607 -11.87954 -11.72663 -11.65273 -11.42596 -11.35166 -11.14983 -11.04603 -10.78030 -10.69620 -10.60628 -10.51909 -10.29868 -10.14699 -10.13144 -10.00274 -9.16732 -8.70647 -8.57069 -8.28173 -7.89062 -7.15869 -6.28081 -4.36637 1.92543 2.06829 3.17726 3.18848 3.26353 3.32491 3.59007 4.22474 4.31045 4.55393 4.82195 4.86479 4.88407 4.99436 5.06162 5.32595 5.40288 5.44311 5.50544 5.51639 5.54280 5.60233 5.64055 5.70187 5.74163 5.75812 5.77450 5.89917 5.96694 6.02266 6.09790 6.13613 6.14357 6.18996 6.21710 6.24327 6.26631 6.32062 6.43965 6.53330 6.60143 6.79306 6.93744 7.05733 7.09828 7.18531 7.30954 7.36027 7.42522 7.65571 7.87420 7.88663 8.16397 8.68502 8.83997 9.31779 10.77853 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009121 B = 0.004761 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.034840 B = 5880.294350 C = 8057.330432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.066 3.934 3 H 0.124 0.876 4 C 0.532 3.468 5 O -0.532 6.532 6 N -0.535 5.535 7 C 0.225 3.775 8 C -0.539 4.539 9 H 0.064 0.936 10 C 0.069 3.931 11 N -0.889 5.889 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.171 3.829 17 C -0.143 4.143 18 C -0.107 4.107 19 C -0.163 4.163 20 C -0.111 4.111 21 C -0.178 4.178 22 N -0.515 5.515 23 C 0.047 3.953 24 C -0.108 4.108 25 C -0.095 4.095 26 C -0.144 4.144 27 C -0.109 4.109 28 C 0.055 3.945 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.267 0.733 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.176 0.824 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.032 0.968 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -9.337 -6.978 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.045 4.045 3 H 0.141 0.859 4 C 0.322 3.678 5 O -0.411 6.411 6 N -0.254 5.254 7 C 0.107 3.893 8 C -0.578 4.578 9 H 0.082 0.918 10 C -0.135 4.135 11 N -0.527 5.527 12 Si 0.724 3.276 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.075 3.925 17 C -0.163 4.163 18 C -0.126 4.126 19 C -0.182 4.182 20 C -0.130 4.130 21 C -0.198 4.198 22 N -0.240 5.240 23 C -0.081 4.081 24 C -0.146 4.146 25 C -0.114 4.114 26 C -0.202 4.202 27 C -0.147 4.147 28 C -0.073 4.073 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.158 0.842 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.192 0.808 40 H 0.116 0.884 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.050 0.950 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.214 -9.812 -6.994 12.110 hybrid contribution -0.016 1.253 -0.110 1.258 sum -1.229 -8.558 -7.104 11.190 Atomic orbital electron populations 1.22352 0.95337 1.02556 1.03269 1.21650 0.94150 0.99967 0.88724 0.85872 1.20471 0.76871 0.86450 0.84004 1.90198 1.51162 1.16056 1.83696 1.45990 1.56197 1.14671 1.08553 1.19754 0.96599 0.73530 0.99466 1.21402 0.95333 0.90844 1.50184 0.91761 1.24903 0.96156 0.97897 0.94513 1.69912 1.22418 1.12273 1.48063 0.86497 0.82796 0.79843 0.78473 1.20387 1.21005 1.19612 1.18062 0.95406 0.91590 0.87437 1.21181 1.01363 1.01108 0.92674 1.20862 0.99486 0.94447 0.97803 1.20963 1.04214 0.94421 0.98571 1.21002 0.99409 0.99094 0.93471 1.22665 1.01865 0.93904 1.01321 1.61727 1.55932 1.04597 1.01718 1.22344 0.94217 0.91535 0.99977 1.21619 1.01994 0.97333 0.93640 1.21205 0.99304 0.95613 0.95231 1.21804 1.00744 0.99877 0.97758 1.21626 1.00571 0.95767 0.96707 1.22121 0.98956 0.96190 0.90055 0.91734 0.92103 0.90778 0.93231 0.93873 0.92356 0.84185 0.86624 0.87296 0.86935 0.80773 0.88386 0.95406 0.92118 0.91143 0.91853 0.92631 0.92998 0.93021 0.91848 0.91062 0.94977 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 7.89 37.16 0.29 -2.42 16 2 C 0.07 1.18 1.84 -68.87 -0.13 1.05 16 3 H 0.12 2.43 6.37 -51.93 -0.33 2.10 16 4 C 0.53 10.75 6.78 -10.98 -0.07 10.68 16 5 O -0.53 -11.06 10.71 5.55 0.06 -11.00 16 6 N -0.54 -11.44 2.69 -114.74 -0.31 -11.75 16 7 C 0.23 5.15 4.12 -5.20 -0.02 5.13 16 8 C -0.54 -13.49 8.27 -34.44 -0.28 -13.77 16 9 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 10 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -23.32 13.29 55.43 0.74 -22.58 16 12 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 16 C 0.17 3.60 6.45 -83.70 -0.54 3.06 16 17 C -0.14 -2.88 8.99 -39.39 -0.35 -3.24 16 18 C -0.11 -1.86 10.04 -39.61 -0.40 -2.26 16 19 C -0.16 -2.63 10.04 -39.55 -0.40 -3.02 16 20 C -0.11 -1.89 10.04 -39.61 -0.40 -2.29 16 21 C -0.18 -3.50 9.03 -39.39 -0.36 -3.85 16 22 N -0.52 -8.29 4.41 -228.08 -1.01 -9.30 16 23 C 0.05 0.68 4.15 -3.83 -0.02 0.66 16 24 C -0.11 -1.34 5.38 -26.65 -0.14 -1.49 16 25 C -0.09 -1.04 2.79 -90.50 -0.25 -1.30 16 26 C -0.14 -1.35 9.20 37.16 0.34 -1.01 16 27 C -0.11 -1.29 5.38 -26.65 -0.14 -1.44 16 28 C 0.05 0.76 5.24 -3.84 -0.02 0.74 16 29 H 0.06 0.89 7.03 -51.93 -0.37 0.52 16 30 H 0.06 0.90 6.83 -51.92 -0.35 0.54 16 31 H 0.07 1.20 6.68 -51.93 -0.35 0.85 16 32 H 0.05 1.13 4.90 -51.93 -0.25 0.87 16 33 H 0.04 1.05 7.01 -51.93 -0.36 0.68 16 34 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.14 3.02 6.13 -52.48 -0.32 2.70 16 36 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 39 H 0.18 3.56 4.61 -55.82 -0.26 3.30 16 40 H 0.10 1.63 5.80 -51.93 -0.30 1.33 16 41 H 0.03 0.38 6.72 -51.93 -0.35 0.03 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.03 0.42 7.13 -51.93 -0.37 0.05 16 51 H 0.08 1.14 7.94 -51.92 -0.41 0.73 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -26.62 385.62 -10.94 -37.56 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -8.22 Total: 9.29 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -2.99 Total: -13.10 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.58 Total: -43.63 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.06 Total: -11.00 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -26.62 -10.94 -37.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070943483.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.851 kcal (2) G-P(sol) polarization free energy of solvation -26.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds