Wall clock time and date at job start Tue Mar 31 2020 16:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46613 * 2 1 4 4 C 1.50699 * 109.47202 * 119.99783 * 2 1 3 5 5 O 1.21283 * 120.00074 * 93.79344 * 4 2 1 6 6 N 1.34782 * 119.99939 * 273.78629 * 4 2 1 7 7 C 1.46491 * 119.99946 * 4.47068 * 6 4 2 8 8 C 1.50702 * 109.47467 * 264.23645 * 7 6 4 9 9 H 1.08006 * 119.99344 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00301 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00261 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99823 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47284 * 89.99750 * 12 10 8 14 14 H 1.48502 * 109.46730 * 209.99821 * 12 10 8 15 15 H 1.48493 * 109.47080 * 329.99594 * 12 10 8 16 16 C 1.39922 * 119.99615 * 184.46452 * 6 4 2 17 17 C 1.38874 * 120.06805 * 170.39169 * 16 6 4 18 18 C 1.38111 * 119.92979 * 179.97438 * 17 16 6 19 19 C 1.38283 * 120.06961 * 359.97438 * 18 17 16 20 20 C 1.38279 * 120.14148 * 0.03811 * 19 18 17 21 21 C 1.38115 * 120.07191 * 359.96061 * 20 19 18 22 22 N 1.46897 * 109.47096 * 240.00235 * 2 1 3 23 23 C 1.46847 * 110.99889 * 314.38313 * 22 2 1 24 24 C 1.53037 * 109.52390 * 185.84052 * 23 22 2 25 25 C 1.53121 * 109.27959 * 300.82256 * 24 23 22 26 26 C 1.53002 * 109.52420 * 177.55535 * 25 24 23 27 27 C 1.53118 * 109.15898 * 57.65376 * 25 24 23 28 28 C 1.46843 * 111.00510 * 78.59693 * 22 2 1 29 29 H 1.08995 * 109.47564 * 65.62461 * 1 2 3 30 30 H 1.09010 * 109.46541 * 185.61966 * 1 2 3 31 31 H 1.08997 * 109.46802 * 305.61609 * 1 2 3 32 32 H 1.09005 * 109.47368 * 24.23750 * 7 6 4 33 33 H 1.09003 * 109.47370 * 144.23352 * 7 6 4 34 34 H 0.97000 * 120.00162 * 180.02562 * 11 10 8 35 35 H 1.08004 * 120.03547 * 359.71047 * 17 16 6 36 36 H 1.08004 * 119.96442 * 179.97438 * 18 17 16 37 37 H 1.07997 * 119.92636 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.96105 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.03299 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.46252 * 305.85732 * 23 22 2 41 41 H 1.09002 * 109.46294 * 65.83101 * 23 22 2 42 42 H 1.08996 * 109.50705 * 180.88084 * 24 23 22 43 43 H 1.09002 * 109.50231 * 60.76255 * 24 23 22 44 44 H 1.08996 * 109.52427 * 297.74906 * 25 24 23 45 45 H 1.09000 * 109.47083 * 300.32031 * 26 25 24 46 46 H 1.09002 * 109.46505 * 60.31709 * 26 25 24 47 47 H 1.08996 * 109.47101 * 180.31910 * 26 25 24 48 48 H 1.09004 * 109.50923 * 182.40328 * 27 25 24 49 49 H 1.09003 * 109.50705 * 62.28968 * 27 25 24 50 50 H 1.09006 * 109.46183 * 294.18033 * 28 22 2 51 51 H 1.09007 * 109.46205 * 54.13970 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3000 -1.8923 1.1816 6 7 2.1843 -0.0322 2.3853 7 6 1.7694 1.3701 2.4712 8 6 2.9596 2.2621 2.2282 9 1 3.9282 1.8276 2.0292 10 6 2.8120 3.6325 2.2600 11 7 1.6325 4.1614 2.5018 12 14 4.2872 4.7380 1.9580 13 1 4.3964 5.0323 0.5066 14 1 4.1162 6.0076 2.7091 15 1 5.5216 4.0529 2.4184 16 6 2.7383 -0.6676 3.5020 17 6 3.0804 0.0732 4.6257 18 6 3.6266 -0.5570 5.7266 19 6 3.8324 -1.9244 5.7110 20 6 3.4931 -2.6648 4.5935 21 6 2.9465 -2.0406 3.4894 22 7 2.0197 -0.6924 -1.1994 23 6 1.2910 -1.9488 -1.4161 24 6 1.9217 -2.7111 -2.5836 25 6 1.8654 -1.8428 -3.8436 26 6 2.5491 -2.5750 -5.0001 27 6 2.5896 -0.5207 -3.5756 28 6 1.9396 0.1781 -2.3793 29 1 -0.3634 0.4241 -0.9360 30 1 -0.3633 -1.0229 0.1006 31 1 -0.3633 0.5985 0.8354 32 1 1.0060 1.5699 1.7192 33 1 1.3630 1.5687 3.4630 34 1 1.5286 5.1256 2.5238 35 1 2.9235 1.1418 4.6371 36 1 3.8932 0.0187 6.6007 37 1 4.2600 -2.4148 6.5729 38 1 3.6554 -3.7325 4.5843 39 1 2.6813 -2.6196 2.6171 40 1 1.3424 -2.5586 -0.5141 41 1 0.2486 -1.7290 -1.6468 42 1 1.3711 -3.6361 -2.7542 43 1 2.9603 -2.9434 -2.3479 44 1 0.8255 -1.6427 -4.1019 45 1 3.5879 -2.7767 -4.7389 46 1 2.0328 -3.5160 -5.1901 47 1 2.5135 -1.9538 -5.8951 48 1 2.5162 0.1194 -4.4549 49 1 3.6387 -0.7184 -3.3555 50 1 0.8941 0.3881 -2.6054 51 1 2.4620 1.1131 -2.1769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070943483.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:29 Heat of formation + Delta-G solvation = -12.160650 kcal Electronic energy + Delta-G solvation = -29820.483496 eV Core-core repulsion = 26105.217494 eV Total energy + Delta-G solvation = -3715.266002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99673 -40.29071 -38.95598 -36.94162 -36.10867 -34.62963 -32.18583 -31.71807 -31.68134 -30.51646 -29.11700 -28.15229 -25.81896 -25.09672 -24.13020 -23.65218 -22.96670 -22.10830 -20.52518 -20.07219 -18.79363 -18.40150 -17.90778 -17.10638 -16.64188 -16.37571 -16.27825 -15.79960 -15.69535 -15.40551 -15.13073 -14.97988 -14.82734 -14.49900 -14.29890 -14.20732 -13.92349 -13.68896 -13.50762 -13.34324 -13.27170 -13.15611 -12.99672 -12.78730 -12.67580 -12.55970 -12.48124 -12.27246 -12.22634 -11.98199 -11.89818 -11.77888 -11.55136 -11.17899 -11.12878 -10.86403 -10.65942 -10.07188 -9.73716 -9.16800 -8.75408 -8.23524 -6.39818 0.45700 0.60795 1.38131 1.40920 1.49806 1.66332 2.05005 2.37638 2.98049 3.04814 3.09014 3.48286 3.83842 3.90665 3.93263 4.08813 4.12337 4.18922 4.22993 4.36058 4.38443 4.44170 4.54595 4.55345 4.60812 4.63604 4.68918 4.70462 4.76104 4.80830 4.86363 4.89874 4.93784 5.00052 5.02229 5.09021 5.13387 5.18750 5.27796 5.29595 5.31041 5.38529 5.50167 5.58353 5.63655 5.64785 5.73676 5.83800 5.94388 6.05141 6.25158 6.35638 6.48466 6.73019 7.19658 7.32351 8.79979 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009121 B = 0.004761 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.034840 B = 5880.294350 C = 8057.330432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.073 3.927 3 H 0.098 0.902 4 C 0.524 3.476 5 O -0.541 6.541 6 N -0.543 5.543 7 C 0.244 3.756 8 C -0.542 4.542 9 H 0.045 0.955 10 C 0.032 3.968 11 N -0.913 5.913 12 Si 0.952 3.048 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.277 1.277 16 C 0.140 3.860 17 C -0.166 4.166 18 C -0.105 4.105 19 C -0.151 4.151 20 C -0.107 4.107 21 C -0.194 4.194 22 N -0.530 5.530 23 C 0.049 3.951 24 C -0.104 4.104 25 C -0.090 4.090 26 C -0.140 4.140 27 C -0.105 4.105 28 C 0.053 3.947 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.023 0.977 34 H 0.270 0.730 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.165 0.835 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.084 0.916 49 H 0.057 0.943 50 H 0.044 0.956 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -10.422 -7.530 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.039 4.039 3 H 0.116 0.884 4 C 0.315 3.685 5 O -0.421 6.421 6 N -0.262 5.262 7 C 0.124 3.876 8 C -0.581 4.581 9 H 0.063 0.937 10 C -0.169 4.169 11 N -0.551 5.551 12 Si 0.777 3.223 13 H -0.197 1.197 14 H -0.203 1.203 15 H -0.202 1.202 16 C 0.044 3.956 17 C -0.186 4.186 18 C -0.123 4.123 19 C -0.169 4.169 20 C -0.125 4.125 21 C -0.213 4.213 22 N -0.255 5.255 23 C -0.078 4.078 24 C -0.141 4.141 25 C -0.109 4.109 26 C -0.197 4.197 27 C -0.142 4.142 28 C -0.075 4.075 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.181 0.819 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.102 0.898 49 H 0.076 0.924 50 H 0.062 0.938 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.781 -10.910 -7.550 13.291 hybrid contribution -0.114 1.506 0.151 1.517 sum -0.895 -9.405 -7.399 12.000 Atomic orbital electron populations 1.22268 0.93583 1.02864 1.03768 1.21488 0.95417 0.98290 0.88655 0.88365 1.20972 0.76625 0.86574 0.84355 1.90194 1.51582 1.16346 1.83940 1.45981 1.56758 1.14058 1.09446 1.19369 0.95754 0.74422 0.98005 1.21418 0.95051 0.91478 1.50118 0.93684 1.25504 0.98302 0.98863 0.94266 1.69981 1.23769 1.12657 1.48716 0.85647 0.79740 0.78299 0.78610 1.19676 1.20264 1.20173 1.18395 0.96873 0.92535 0.87750 1.21147 1.03360 1.00115 0.93996 1.21217 0.98077 0.95527 0.97498 1.21399 1.02444 0.93729 0.99366 1.21393 0.97725 1.00778 0.92596 1.22658 1.03153 0.93221 1.02311 1.61729 1.56553 1.05417 1.01830 1.22303 0.94972 0.90643 0.99869 1.21598 1.00940 0.98092 0.93516 1.21181 0.99922 0.94781 0.94996 1.21760 1.00281 1.00369 0.97337 1.21620 0.99618 0.96616 0.96372 1.22194 0.99732 0.95613 0.89921 0.89749 0.91429 0.92013 0.93368 0.95897 0.92078 0.86633 0.83925 0.83134 0.83740 0.81882 0.90818 0.94219 0.90372 0.92837 0.90876 0.93193 0.91971 0.91822 0.89779 0.92408 0.93804 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 7.89 71.98 0.57 -4.63 16 2 C 0.07 2.70 1.84 44.17 0.08 2.78 16 3 H 0.10 4.10 6.37 -2.38 -0.02 4.09 16 4 C 0.52 22.24 6.78 87.66 0.59 22.84 16 5 O -0.54 -23.44 10.71 -3.04 -0.03 -23.47 16 6 N -0.54 -24.56 2.69 -635.31 -1.71 -26.27 16 7 C 0.24 11.84 4.12 85.64 0.35 12.20 16 8 C -0.54 -28.37 8.27 25.60 0.21 -28.16 16 9 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 10 C 0.03 1.66 5.46 84.65 0.46 2.12 16 11 N -0.91 -48.93 13.29 21.44 0.28 -48.64 16 12 Si 0.95 41.78 29.54 68.60 2.03 43.81 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 16 C 0.14 6.11 6.45 38.15 0.25 6.36 16 17 C -0.17 -6.89 8.99 22.39 0.20 -6.69 16 18 C -0.10 -3.49 10.04 22.25 0.22 -3.27 16 19 C -0.15 -4.42 10.04 22.29 0.22 -4.20 16 20 C -0.11 -3.41 10.04 22.25 0.22 -3.19 16 21 C -0.19 -7.70 9.03 22.39 0.20 -7.50 16 22 N -0.53 -17.36 4.41 -875.51 -3.86 -21.22 16 23 C 0.05 1.42 4.15 86.33 0.36 1.78 16 24 C -0.10 -2.46 5.38 30.65 0.16 -2.30 16 25 C -0.09 -1.80 2.79 -10.71 -0.03 -1.83 16 26 C -0.14 -2.28 9.20 71.98 0.66 -1.62 16 27 C -0.10 -2.35 5.38 30.64 0.16 -2.18 16 28 C 0.05 1.45 5.24 86.33 0.45 1.90 16 29 H 0.08 2.27 7.03 -2.39 -0.02 2.25 16 30 H 0.07 2.01 6.83 -2.38 -0.02 1.99 16 31 H 0.06 2.07 6.68 -2.39 -0.02 2.06 16 32 H 0.05 2.33 4.90 -2.38 -0.01 2.32 16 33 H 0.02 1.19 7.01 -2.39 -0.02 1.18 16 34 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 35 H 0.12 5.30 6.13 -2.91 -0.02 5.28 16 36 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 39 H 0.16 6.85 4.61 -55.73 -0.26 6.59 16 40 H 0.07 2.50 5.80 -2.39 -0.01 2.48 16 41 H 0.04 1.04 6.72 -2.39 -0.02 1.03 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 50 H 0.04 1.10 7.13 -2.38 -0.02 1.08 16 51 H 0.06 1.92 7.94 -2.38 -0.02 1.91 16 Total: -1.00 -59.43 385.62 2.74 -56.69 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.67 Total: 34.68 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.36 Total: -15.57 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -5.29 Total: -96.13 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.03 Total: -23.47 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -59.43 2.74 -56.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070943483.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.528 kcal (2) G-P(sol) polarization free energy of solvation -59.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds