Wall clock time and date at job start Tue Mar 31 2020 16:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46901 * 2 1 4 4 C 1.50692 * 109.47336 * 239.99477 * 2 1 3 5 5 O 1.21293 * 120.00090 * 270.03585 * 4 2 1 6 6 N 1.34775 * 120.00022 * 90.03138 * 4 2 1 7 7 C 1.46498 * 120.00205 * 355.41858 * 6 4 2 8 8 C 1.50696 * 109.47604 * 89.99342 * 7 6 4 9 9 H 1.08003 * 119.99628 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00133 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00079 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99849 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47406 * 359.97438 * 12 10 8 14 14 H 1.48508 * 109.47407 * 119.99417 * 12 10 8 15 15 H 1.48496 * 109.47182 * 239.99430 * 12 10 8 16 16 C 1.39930 * 120.00099 * 175.40631 * 6 4 2 17 17 C 1.38874 * 120.06728 * 6.58498 * 16 6 4 18 18 C 1.38115 * 119.92673 * 179.76025 * 17 16 6 19 19 C 1.38287 * 120.07016 * 0.48608 * 18 17 16 20 20 C 1.38280 * 120.13841 * 359.76489 * 19 18 17 21 21 C 1.38105 * 120.07545 * 0.02562 * 20 19 18 22 22 N 1.46894 * 109.46901 * 119.99290 * 2 1 3 23 23 C 1.46854 * 111.00203 * 297.91901 * 22 2 1 24 24 C 1.53041 * 109.52214 * 174.15879 * 23 22 2 25 25 C 1.53120 * 109.27579 * 59.18216 * 24 23 22 26 26 C 1.53005 * 109.52132 * 182.43872 * 25 24 23 27 27 C 1.53121 * 109.15790 * 302.33752 * 25 24 23 28 28 C 1.46847 * 111.00309 * 173.70441 * 22 2 1 29 29 H 1.09004 * 109.46820 * 65.35665 * 1 2 3 30 30 H 1.08998 * 109.46972 * 185.34994 * 1 2 3 31 31 H 1.08998 * 109.46973 * 305.35639 * 1 2 3 32 32 H 1.09002 * 109.47206 * 209.99582 * 7 6 4 33 33 H 1.09001 * 109.46638 * 329.99470 * 7 6 4 34 34 H 0.96995 * 120.00072 * 180.02562 * 11 10 8 35 35 H 1.08003 * 120.03606 * 359.96401 * 17 16 6 36 36 H 1.08000 * 119.96391 * 180.24505 * 18 17 16 37 37 H 1.07993 * 119.92799 * 179.74237 * 19 18 17 38 38 H 1.07999 * 119.96120 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.04097 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.46054 * 54.14511 * 23 22 2 41 41 H 1.08992 * 109.45786 * 294.17378 * 23 22 2 42 42 H 1.08998 * 109.50236 * 299.23759 * 24 23 22 43 43 H 1.09003 * 109.49934 * 179.11449 * 24 23 22 44 44 H 1.08997 * 109.53026 * 62.24702 * 25 24 23 45 45 H 1.09007 * 109.46880 * 59.99766 * 26 25 24 46 46 H 1.08994 * 109.47265 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.47104 * 299.99980 * 26 25 24 48 48 H 1.09006 * 109.49956 * 177.59499 * 27 25 24 49 49 H 1.08993 * 109.50805 * 297.71822 * 27 25 24 50 50 H 1.08997 * 109.46102 * 305.86297 * 28 22 2 51 51 H 1.09004 * 109.45564 * 65.82595 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.2340 -1.9062 -1.2004 6 7 2.2577 -0.0173 -2.3640 7 6 1.9198 1.4066 -2.4314 8 6 3.1063 2.2258 -1.9933 9 1 4.0208 1.7349 -1.6949 10 6 3.0243 3.6020 -1.9734 11 7 1.9109 4.1998 -2.3372 12 14 4.4954 4.6175 -1.4309 13 1 5.6177 3.7124 -1.0752 14 1 4.9139 5.5137 -2.5387 15 1 4.1241 5.4337 -0.2473 16 6 2.8145 -0.6576 -3.4766 17 6 3.0090 -2.0326 -3.4631 18 6 3.5543 -2.6623 -4.5648 19 6 3.9158 -1.9238 -5.6766 20 6 3.7282 -0.5538 -5.6912 21 6 3.1794 0.0813 -4.5944 22 7 2.0197 -0.6923 1.1995 23 6 1.5899 0.0018 2.4202 24 6 1.9914 -0.8224 3.6455 25 6 3.5109 -1.0115 3.6517 26 6 3.9124 -1.8861 4.8412 27 6 3.9377 -1.6929 2.3486 28 6 3.4798 -0.8436 1.1608 29 1 -0.3633 0.4285 -0.9341 30 1 -0.3633 -1.0232 0.0958 31 1 -0.3633 0.5947 0.8381 32 1 1.6553 1.6691 -3.4557 33 1 1.0746 1.6108 -1.7741 34 1 1.8534 5.1679 -2.3236 35 1 2.7311 -2.6094 -2.5932 36 1 3.7021 -3.7321 -4.5564 37 1 4.3458 -2.4180 -6.5352 38 1 4.0119 0.0202 -6.5609 39 1 3.0336 1.1513 -4.6062 40 1 0.5071 0.1262 2.4051 41 1 2.0671 0.9805 2.4684 42 1 1.5035 -1.7962 3.6048 43 1 1.6862 -0.2993 4.5518 44 1 3.9987 -0.0401 3.7316 45 1 3.4260 -2.8580 4.7582 46 1 4.9940 -2.0206 4.8446 47 1 3.6031 -1.4030 5.7681 48 1 5.0231 -1.7918 2.3282 49 1 3.4805 -2.6804 2.2875 50 1 3.7697 -1.3330 0.2310 51 1 3.9482 0.1392 1.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070943485.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:32 Heat of formation + Delta-G solvation = 0.461859 kcal Electronic energy + Delta-G solvation = -30017.723674 eV Core-core repulsion = 26303.005025 eV Total energy + Delta-G solvation = -3714.718649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50212 -38.92388 -37.59508 -35.28410 -34.83198 -32.75143 -31.14441 -30.65327 -30.26487 -29.14415 -27.31724 -27.11329 -24.38233 -23.38797 -22.58504 -22.31057 -21.64248 -20.73067 -19.51856 -18.73159 -16.98802 -16.86594 -16.38818 -15.86007 -15.35690 -14.93845 -14.66786 -14.45466 -14.16924 -14.09601 -13.90964 -13.69296 -13.51215 -13.18662 -12.95579 -12.69705 -12.59282 -12.37739 -12.22990 -12.03037 -11.75641 -11.67559 -11.58920 -11.38498 -11.31336 -11.09784 -11.05817 -10.98170 -10.79709 -10.57194 -10.52949 -10.33706 -10.15420 -10.05210 -10.00397 -9.20227 -8.74485 -8.52609 -8.32864 -7.92578 -7.19490 -6.32258 -4.41180 1.88028 2.02610 3.12644 3.16295 3.22517 3.28000 3.55789 4.17798 4.25196 4.50809 4.82810 4.89306 4.92055 4.98641 5.02909 5.37347 5.47254 5.47918 5.51823 5.56371 5.62607 5.66236 5.70036 5.73371 5.73833 5.75337 5.84106 5.96264 5.97346 6.08244 6.10812 6.14805 6.15859 6.18303 6.18942 6.25073 6.29455 6.38383 6.45835 6.55087 6.58235 6.76387 6.90021 7.00258 7.07171 7.14716 7.28948 7.33533 7.39825 7.60478 7.84254 7.85327 8.10551 8.64099 8.81004 9.27180 10.73739 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.005150 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.600240 B = 5435.372972 C = 7313.796446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.063 3.937 3 H 0.090 0.910 4 C 0.526 3.474 5 O -0.525 6.525 6 N -0.536 5.536 7 C 0.226 3.774 8 C -0.540 4.540 9 H 0.062 0.938 10 C 0.070 3.930 11 N -0.886 5.886 12 Si 0.895 3.105 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.281 1.281 16 C 0.170 3.830 17 C -0.182 4.182 18 C -0.109 4.109 19 C -0.163 4.163 20 C -0.106 4.106 21 C -0.146 4.146 22 N -0.515 5.515 23 C 0.052 3.948 24 C -0.107 4.107 25 C -0.096 4.096 26 C -0.144 4.144 27 C -0.105 4.105 28 C 0.049 3.951 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.267 0.733 35 H 0.180 0.820 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.137 0.863 40 H 0.078 0.922 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.061 0.939 49 H 0.070 0.930 50 H 0.084 0.916 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.046 -8.259 6.331 10.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.047 4.047 3 H 0.108 0.892 4 C 0.316 3.684 5 O -0.404 6.404 6 N -0.255 5.255 7 C 0.107 3.893 8 C -0.578 4.578 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.207 1.207 16 C 0.074 3.926 17 C -0.202 4.202 18 C -0.128 4.128 19 C -0.182 4.182 20 C -0.124 4.124 21 C -0.166 4.166 22 N -0.240 5.240 23 C -0.076 4.076 24 C -0.145 4.145 25 C -0.115 4.115 26 C -0.201 4.201 27 C -0.143 4.143 28 C -0.079 4.079 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.196 0.804 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.155 0.845 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.102 0.898 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.197 -9.086 6.409 11.121 hybrid contribution 1.249 1.833 0.022 2.219 sum 1.052 -7.253 6.432 9.751 Atomic orbital electron populations 1.21754 0.92396 1.02685 1.02597 1.21645 0.96973 0.97982 0.88146 0.89211 1.20499 0.76939 0.86750 0.84214 1.90236 1.51905 1.15035 1.83263 1.46048 1.56355 1.13123 1.09978 1.19745 0.97267 0.72726 0.99602 1.21395 0.98996 0.91153 1.46274 0.91991 1.24899 0.96192 0.97620 0.94720 1.69915 1.25719 1.10144 1.46621 0.86477 0.82613 0.80182 0.78545 1.19586 1.20580 1.20730 1.18098 0.95282 0.91688 0.87499 1.22799 1.01863 0.93886 1.01616 1.21027 0.99121 0.99134 0.93496 1.20971 1.04165 0.94362 0.98700 1.20850 0.99399 0.94435 0.97741 1.21118 1.01754 1.00922 0.92846 1.61765 1.11789 1.50071 1.00417 1.22144 1.00697 0.95226 0.89492 1.21611 0.95430 1.00828 0.96609 1.21214 0.96176 0.99081 0.95030 1.21798 1.00966 0.99808 0.97522 1.21580 0.99861 0.99642 0.93189 1.22177 0.87129 0.98731 0.99833 0.91485 0.91518 0.91634 0.93565 0.93408 0.92338 0.80431 0.86859 0.87238 0.86587 0.84482 0.90412 0.94751 0.91142 0.91881 0.91651 0.92683 0.92960 0.93014 0.92026 0.91096 0.89819 0.95002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.61 37.16 0.32 -1.83 16 2 C 0.06 1.15 1.63 -68.87 -0.11 1.04 16 3 H 0.09 1.84 6.24 -51.93 -0.32 1.51 16 4 C 0.53 10.71 5.60 -10.99 -0.06 10.65 16 5 O -0.53 -11.14 11.67 5.55 0.06 -11.07 16 6 N -0.54 -11.46 2.68 -114.74 -0.31 -11.77 16 7 C 0.23 5.18 4.09 -5.20 -0.02 5.16 16 8 C -0.54 -13.47 8.55 -34.44 -0.29 -13.77 16 9 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 10 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -23.29 13.29 55.43 0.74 -22.56 16 12 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 16 C 0.17 3.56 6.49 -83.69 -0.54 3.01 16 17 C -0.18 -3.56 9.05 -39.39 -0.36 -3.92 16 18 C -0.11 -1.84 10.04 -39.61 -0.40 -2.23 16 19 C -0.16 -2.59 10.04 -39.55 -0.40 -2.99 16 20 C -0.11 -1.80 10.04 -39.61 -0.40 -2.19 16 21 C -0.15 -2.90 9.15 -39.39 -0.36 -3.26 16 22 N -0.51 -8.48 4.29 -228.08 -0.98 -9.46 16 23 C 0.05 0.73 5.25 -3.83 -0.02 0.71 16 24 C -0.11 -1.26 5.38 -26.65 -0.14 -1.40 16 25 C -0.10 -1.14 2.79 -90.49 -0.25 -1.39 16 26 C -0.14 -1.41 9.20 37.16 0.34 -1.07 16 27 C -0.10 -1.43 5.38 -26.65 -0.14 -1.57 16 28 C 0.05 0.82 5.08 -3.84 -0.02 0.80 16 29 H 0.07 1.09 7.10 -51.93 -0.37 0.72 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.90 6.61 -51.93 -0.34 0.56 16 32 H 0.05 1.12 6.52 -51.93 -0.34 0.78 16 33 H 0.05 1.11 5.53 -51.93 -0.29 0.82 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.18 3.65 4.53 -56.23 -0.25 3.40 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.14 2.89 6.27 -52.49 -0.33 2.56 16 40 H 0.08 1.00 6.19 -51.93 -0.32 0.68 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 50 H 0.08 1.61 5.82 -51.93 -0.30 1.30 16 51 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -26.77 389.29 -10.93 -37.70 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -8.33 Total: 8.85 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -2.96 Total: -12.59 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.55 Total: -43.78 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.06 Total: -11.07 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -26.77 -10.93 -37.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070943485.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.158 kcal (2) G-P(sol) polarization free energy of solvation -26.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds