Wall clock time and date at job start Tue Mar 31 2020 16:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46901 * 2 1 4 4 C 1.50692 * 109.47336 * 239.99477 * 2 1 3 5 5 O 1.21293 * 120.00090 * 270.03585 * 4 2 1 6 6 N 1.34775 * 120.00022 * 90.03138 * 4 2 1 7 7 C 1.46498 * 120.00205 * 355.41858 * 6 4 2 8 8 C 1.50696 * 109.47604 * 89.99342 * 7 6 4 9 9 H 1.08003 * 119.99628 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00133 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00079 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99849 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47406 * 359.97438 * 12 10 8 14 14 H 1.48508 * 109.47407 * 119.99417 * 12 10 8 15 15 H 1.48496 * 109.47182 * 239.99430 * 12 10 8 16 16 C 1.39930 * 120.00099 * 175.40631 * 6 4 2 17 17 C 1.38874 * 120.06728 * 6.58498 * 16 6 4 18 18 C 1.38115 * 119.92673 * 179.76025 * 17 16 6 19 19 C 1.38287 * 120.07016 * 0.48608 * 18 17 16 20 20 C 1.38280 * 120.13841 * 359.76489 * 19 18 17 21 21 C 1.38105 * 120.07545 * 0.02562 * 20 19 18 22 22 N 1.46894 * 109.46901 * 119.99290 * 2 1 3 23 23 C 1.46854 * 111.00203 * 297.91901 * 22 2 1 24 24 C 1.53041 * 109.52214 * 174.15879 * 23 22 2 25 25 C 1.53120 * 109.27579 * 59.18216 * 24 23 22 26 26 C 1.53005 * 109.52132 * 182.43872 * 25 24 23 27 27 C 1.53121 * 109.15790 * 302.33752 * 25 24 23 28 28 C 1.46847 * 111.00309 * 173.70441 * 22 2 1 29 29 H 1.09004 * 109.46820 * 65.35665 * 1 2 3 30 30 H 1.08998 * 109.46972 * 185.34994 * 1 2 3 31 31 H 1.08998 * 109.46973 * 305.35639 * 1 2 3 32 32 H 1.09002 * 109.47206 * 209.99582 * 7 6 4 33 33 H 1.09001 * 109.46638 * 329.99470 * 7 6 4 34 34 H 0.96995 * 120.00072 * 180.02562 * 11 10 8 35 35 H 1.08003 * 120.03606 * 359.96401 * 17 16 6 36 36 H 1.08000 * 119.96391 * 180.24505 * 18 17 16 37 37 H 1.07993 * 119.92799 * 179.74237 * 19 18 17 38 38 H 1.07999 * 119.96120 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.04097 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.46054 * 54.14511 * 23 22 2 41 41 H 1.08992 * 109.45786 * 294.17378 * 23 22 2 42 42 H 1.08998 * 109.50236 * 299.23759 * 24 23 22 43 43 H 1.09003 * 109.49934 * 179.11449 * 24 23 22 44 44 H 1.08997 * 109.53026 * 62.24702 * 25 24 23 45 45 H 1.09007 * 109.46880 * 59.99766 * 26 25 24 46 46 H 1.08994 * 109.47265 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.47104 * 299.99980 * 26 25 24 48 48 H 1.09006 * 109.49956 * 177.59499 * 27 25 24 49 49 H 1.08993 * 109.50805 * 297.71822 * 27 25 24 50 50 H 1.08997 * 109.46102 * 305.86297 * 28 22 2 51 51 H 1.09004 * 109.45564 * 65.82595 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.2340 -1.9062 -1.2004 6 7 2.2577 -0.0173 -2.3640 7 6 1.9198 1.4066 -2.4314 8 6 3.1063 2.2258 -1.9933 9 1 4.0208 1.7349 -1.6949 10 6 3.0243 3.6020 -1.9734 11 7 1.9109 4.1998 -2.3372 12 14 4.4954 4.6175 -1.4309 13 1 5.6177 3.7124 -1.0752 14 1 4.9139 5.5137 -2.5387 15 1 4.1241 5.4337 -0.2473 16 6 2.8145 -0.6576 -3.4766 17 6 3.0090 -2.0326 -3.4631 18 6 3.5543 -2.6623 -4.5648 19 6 3.9158 -1.9238 -5.6766 20 6 3.7282 -0.5538 -5.6912 21 6 3.1794 0.0813 -4.5944 22 7 2.0197 -0.6923 1.1995 23 6 1.5899 0.0018 2.4202 24 6 1.9914 -0.8224 3.6455 25 6 3.5109 -1.0115 3.6517 26 6 3.9124 -1.8861 4.8412 27 6 3.9377 -1.6929 2.3486 28 6 3.4798 -0.8436 1.1608 29 1 -0.3633 0.4285 -0.9341 30 1 -0.3633 -1.0232 0.0958 31 1 -0.3633 0.5947 0.8381 32 1 1.6553 1.6691 -3.4557 33 1 1.0746 1.6108 -1.7741 34 1 1.8534 5.1679 -2.3236 35 1 2.7311 -2.6094 -2.5932 36 1 3.7021 -3.7321 -4.5564 37 1 4.3458 -2.4180 -6.5352 38 1 4.0119 0.0202 -6.5609 39 1 3.0336 1.1513 -4.6062 40 1 0.5071 0.1262 2.4051 41 1 2.0671 0.9805 2.4684 42 1 1.5035 -1.7962 3.6048 43 1 1.6862 -0.2993 4.5518 44 1 3.9987 -0.0401 3.7316 45 1 3.4260 -2.8580 4.7582 46 1 4.9940 -2.0206 4.8446 47 1 3.6031 -1.4030 5.7681 48 1 5.0231 -1.7918 2.3282 49 1 3.4805 -2.6804 2.2875 50 1 3.7697 -1.3330 0.2310 51 1 3.9482 0.1392 1.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070943485.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:31 Heat of formation + Delta-G solvation = -12.151056 kcal Electronic energy + Delta-G solvation = -30018.270611 eV Core-core repulsion = 26303.005025 eV Total energy + Delta-G solvation = -3715.265586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.05125 -40.21345 -38.98614 -36.98192 -36.04143 -34.67765 -32.41219 -31.87176 -31.67824 -30.61987 -29.14002 -28.17864 -25.79777 -25.16535 -23.84313 -23.61091 -23.00299 -22.11090 -20.61386 -20.26878 -18.83524 -18.50320 -18.00440 -17.23559 -16.80680 -16.49047 -16.32449 -15.78524 -15.46567 -15.36585 -15.09346 -15.01838 -14.82148 -14.68233 -14.32475 -14.27182 -14.08173 -13.77058 -13.54719 -13.42353 -13.15183 -13.00694 -12.86772 -12.84942 -12.75009 -12.54434 -12.49494 -12.30982 -12.27879 -12.13464 -12.00569 -11.83604 -11.55562 -11.20205 -11.10704 -10.90241 -10.71481 -10.09096 -9.77199 -9.31703 -8.79180 -8.28221 -6.44974 0.41609 0.57902 1.31799 1.35787 1.45089 1.62365 1.99906 2.32363 2.86523 2.99730 3.04512 3.42499 3.83340 3.85309 3.91474 4.07821 4.14834 4.19729 4.25745 4.30756 4.40335 4.42642 4.44679 4.56228 4.59181 4.64250 4.65095 4.68731 4.74809 4.79820 4.83585 4.86387 4.93829 4.96033 4.99997 5.02335 5.14066 5.15934 5.24924 5.26691 5.27253 5.36100 5.44615 5.55277 5.58624 5.62142 5.70753 5.80531 5.89391 5.95513 6.12413 6.33076 6.41191 6.67697 7.15795 7.27157 8.75538 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.005150 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.600240 B = 5435.372972 C = 7313.796446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.068 3.932 3 H 0.061 0.939 4 C 0.521 3.479 5 O -0.537 6.537 6 N -0.543 5.543 7 C 0.244 3.756 8 C -0.542 4.542 9 H 0.042 0.958 10 C 0.032 3.968 11 N -0.911 5.911 12 Si 0.950 3.050 13 H -0.277 1.277 14 H -0.274 1.274 15 H -0.273 1.273 16 C 0.138 3.862 17 C -0.198 4.198 18 C -0.105 4.105 19 C -0.150 4.150 20 C -0.102 4.102 21 C -0.168 4.168 22 N -0.514 5.514 23 C 0.048 3.952 24 C -0.101 4.101 25 C -0.095 4.095 26 C -0.137 4.137 27 C -0.098 4.098 28 C 0.052 3.948 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.029 0.971 33 H 0.043 0.957 34 H 0.271 0.729 35 H 0.166 0.834 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.023 0.977 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.053 0.947 51 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -9.309 6.920 11.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.044 4.044 3 H 0.079 0.921 4 C 0.312 3.688 5 O -0.417 6.417 6 N -0.263 5.263 7 C 0.124 3.876 8 C -0.580 4.580 9 H 0.061 0.939 10 C -0.169 4.169 11 N -0.549 5.549 12 Si 0.775 3.225 13 H -0.202 1.202 14 H -0.199 1.199 15 H -0.198 1.198 16 C 0.043 3.957 17 C -0.218 4.218 18 C -0.123 4.123 19 C -0.169 4.169 20 C -0.121 4.121 21 C -0.188 4.188 22 N -0.240 5.240 23 C -0.080 4.080 24 C -0.138 4.138 25 C -0.114 4.114 26 C -0.195 4.195 27 C -0.136 4.136 28 C -0.076 4.076 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.183 0.817 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.162 0.838 39 H 0.133 0.867 40 H 0.110 0.890 41 H 0.042 0.958 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.071 0.929 51 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 0.414 -10.147 6.997 12.332 hybrid contribution 1.094 2.091 -0.264 2.375 sum 1.508 -8.055 6.734 10.607 Atomic orbital electron populations 1.21723 0.90461 1.03416 1.03085 1.21589 0.98441 0.96131 0.88206 0.92079 1.20890 0.76605 0.86799 0.84514 1.90226 1.52490 1.15417 1.83540 1.46015 1.56927 1.12450 1.10878 1.19357 0.96373 0.73738 0.98088 1.21399 0.98778 0.91646 1.46208 0.93935 1.25506 0.98346 0.98378 0.94714 1.69982 1.27041 1.10557 1.47328 0.85631 0.79661 0.78723 0.78494 1.20204 1.19906 1.19839 1.18427 0.96825 0.92612 0.87807 1.22762 1.03216 0.93229 1.02572 1.21410 0.97472 1.00809 0.92610 1.21414 1.02328 0.93714 0.99423 1.21216 0.97924 0.95482 0.97428 1.21105 1.03623 1.00000 0.94086 1.61871 1.11379 1.50020 1.00689 1.22322 1.01437 0.94998 0.89206 1.21611 0.95249 1.00761 0.96214 1.21209 0.96301 0.99062 0.94788 1.21738 1.01330 0.99534 0.96856 1.21547 1.00290 0.98894 0.92843 1.22113 0.87508 0.97965 1.00033 0.92452 0.90883 0.89342 0.95309 0.93925 0.91983 0.81732 0.83703 0.83027 0.83762 0.86748 0.89034 0.95848 0.90881 0.89425 0.92227 0.92299 0.92534 0.91555 0.91257 0.91291 0.92891 0.96917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 8.61 71.98 0.62 -3.52 16 2 C 0.07 2.58 1.63 44.17 0.07 2.65 16 3 H 0.06 2.67 6.24 -2.39 -0.01 2.66 16 4 C 0.52 22.46 5.60 87.65 0.49 22.95 16 5 O -0.54 -23.87 11.67 -3.07 -0.04 -23.91 16 6 N -0.54 -24.72 2.68 -635.31 -1.70 -26.42 16 7 C 0.24 11.94 4.09 85.63 0.35 12.29 16 8 C -0.54 -28.44 8.55 25.60 0.22 -28.22 16 9 H 0.04 2.36 7.81 -2.91 -0.02 2.33 16 10 C 0.03 1.68 5.46 84.66 0.46 2.14 16 11 N -0.91 -48.96 13.29 21.45 0.28 -48.68 16 12 Si 0.95 41.83 29.54 68.60 2.03 43.85 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 16 C 0.14 6.04 6.49 38.15 0.25 6.29 16 17 C -0.20 -7.88 9.05 22.39 0.20 -7.68 16 18 C -0.10 -3.33 10.04 22.25 0.22 -3.10 16 19 C -0.15 -4.33 10.04 22.29 0.22 -4.10 16 20 C -0.10 -3.33 10.04 22.25 0.22 -3.11 16 21 C -0.17 -6.87 9.15 22.39 0.20 -6.67 16 22 N -0.51 -17.35 4.29 -875.52 -3.76 -21.10 16 23 C 0.05 1.30 5.25 86.33 0.45 1.75 16 24 C -0.10 -2.17 5.38 30.65 0.16 -2.01 16 25 C -0.09 -2.11 2.79 -10.71 -0.03 -2.14 16 26 C -0.14 -2.34 9.20 71.98 0.66 -1.68 16 27 C -0.10 -2.66 5.38 30.65 0.16 -2.49 16 28 C 0.05 1.83 5.08 86.32 0.44 2.26 16 29 H 0.06 1.93 7.10 -2.38 -0.02 1.91 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.09 2.39 6.61 -2.39 -0.02 2.37 16 32 H 0.03 1.50 6.52 -2.39 -0.02 1.48 16 33 H 0.04 2.10 5.53 -2.39 -0.01 2.09 16 34 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 35 H 0.17 7.00 4.53 -62.28 -0.28 6.72 16 36 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 38 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 39 H 0.11 5.13 6.27 -2.91 -0.02 5.11 16 40 H 0.09 2.23 6.19 -2.39 -0.01 2.21 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 49 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.05 2.17 5.82 -2.39 -0.01 2.15 16 51 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -60.37 389.29 2.84 -57.53 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.64 Total: 33.13 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.39 Total: -14.40 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -5.18 Total: -96.21 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.04 Total: -23.91 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -60.37 2.84 -57.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070943485.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.376 kcal (2) G-P(sol) polarization free energy of solvation -60.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds