Wall clock time and date at job start Tue Mar 31 2020 16:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50704 * 109.47394 * 2 1 4 4 C 1.38236 * 119.99956 * 269.87252 * 3 2 1 5 5 C 1.38235 * 119.99571 * 179.97438 * 4 3 2 6 6 C 1.38230 * 120.00556 * 0.08222 * 5 4 3 7 7 C 1.50697 * 120.00623 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.46713 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47590 * 120.00081 * 7 6 5 10 10 C 1.53002 * 109.47362 * 240.00494 * 7 6 5 11 11 C 1.50698 * 109.47111 * 174.99535 * 10 7 6 12 12 O 1.21278 * 120.00159 * 0.02562 * 11 10 7 13 13 N 1.34781 * 119.99857 * 179.97438 * 11 10 7 14 14 C 1.46971 * 120.59133 * 359.72765 * 13 11 10 15 15 C 1.53806 * 108.39913 * 124.75785 * 14 13 11 16 16 N 1.46960 * 108.58338 * 49.63003 * 15 14 13 17 17 C 1.36945 * 120.59384 * 124.62371 * 16 15 14 18 18 H 1.08001 * 120.00002 * 208.23180 * 17 16 15 19 19 C 1.38810 * 119.99692 * 28.23354 * 17 16 15 20 20 N 1.31620 * 120.00243 * 17.58130 * 19 17 16 21 21 Si 1.86800 * 119.99761 * 197.58053 * 19 17 16 22 22 H 1.48496 * 109.47030 * 60.00114 * 21 19 17 23 23 H 1.48506 * 109.46836 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47228 * 299.99939 * 21 19 17 25 25 C 1.46971 * 118.81407 * 304.65235 * 16 15 14 26 26 C 1.46962 * 120.59522 * 180.02562 * 13 11 10 27 27 C 1.38235 * 119.99569 * 0.02562 * 6 5 4 28 28 C 1.38230 * 119.99920 * 89.99830 * 3 2 1 29 29 H 1.08996 * 109.47299 * 299.99900 * 1 2 3 30 30 H 1.09008 * 109.47608 * 60.00234 * 1 2 3 31 31 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47117 * 240.00218 * 2 1 3 33 33 H 1.09002 * 109.47715 * 120.00178 * 2 1 3 34 34 H 1.08003 * 120.00227 * 0.08007 * 4 3 2 35 35 H 1.08003 * 119.99519 * 180.36529 * 5 4 3 36 36 H 1.08998 * 109.47391 * 180.02562 * 9 7 6 37 37 H 1.09011 * 109.46958 * 300.00431 * 9 7 6 38 38 H 1.08998 * 109.46825 * 60.00013 * 9 7 6 39 39 H 1.08995 * 109.46853 * 294.99785 * 10 7 6 40 40 H 1.09001 * 109.46887 * 54.99124 * 10 7 6 41 41 H 1.09002 * 109.60360 * 244.53974 * 14 13 11 42 42 H 1.09000 * 109.61211 * 5.04586 * 14 13 11 43 43 H 1.09001 * 109.74071 * 289.83948 * 15 14 13 44 44 H 1.09004 * 109.67359 * 169.38442 * 15 14 13 45 45 H 0.96996 * 120.00106 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.60587 * 295.47497 * 25 16 15 47 47 H 1.08999 * 109.75314 * 175.05214 * 25 16 15 48 48 H 1.08999 * 109.60943 * 354.94649 * 26 13 11 49 49 H 1.08994 * 109.60802 * 115.28995 * 26 13 11 50 50 H 1.08006 * 119.99909 * 179.97438 * 27 6 5 51 51 H 1.08001 * 119.99924 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2652 2.0716 -1.1972 5 6 2.7256 3.3750 -1.1971 6 6 2.9546 4.0272 0.0000 7 6 3.4570 5.4479 0.0001 8 1 3.5789 5.7902 -1.0276 9 6 2.4485 6.3455 0.7199 10 6 4.8040 5.5126 0.7229 11 6 5.3647 6.9073 0.6166 12 8 4.7475 7.7653 0.0218 13 7 6.5516 7.2015 1.1834 14 6 7.3071 6.1736 1.9133 15 6 8.7157 6.0811 1.3024 16 7 9.2746 7.4369 1.2068 17 6 10.4802 7.7360 1.7835 18 1 10.6838 8.7425 2.1181 19 6 11.4404 6.7456 1.9379 20 7 11.3543 5.6313 1.2427 21 14 12.8550 6.9944 3.1323 22 1 12.3172 7.1894 4.5026 23 1 13.7364 5.7994 3.1113 24 1 13.6361 8.1921 2.7319 25 6 8.5164 8.4662 0.4817 26 6 7.1103 8.5574 1.0883 27 6 2.7238 3.3756 1.1971 28 6 2.2627 2.0724 1.1971 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0860 1.5622 -2.1325 35 1 2.9019 3.8854 -2.1324 36 1 2.8117 7.3732 0.7195 37 1 1.4888 6.2995 0.2049 38 1 2.3262 6.0033 1.7475 39 1 4.6655 5.2556 1.7730 40 1 5.4965 4.8066 0.2644 41 1 7.3790 6.4505 2.9651 42 1 6.8020 5.2124 1.8191 43 1 8.6574 5.6385 0.3081 44 1 9.3523 5.4670 1.9394 45 1 12.0255 4.9394 1.3503 46 1 8.4440 8.1934 -0.5711 47 1 9.0187 9.4289 0.5764 48 1 6.4752 9.1708 0.4491 49 1 7.1658 9.0007 2.0825 50 1 2.9031 3.8850 2.1325 51 1 2.0822 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073101189.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:14 Heat of formation + Delta-G solvation = -17.157681 kcal Electronic energy + Delta-G solvation = -28286.920392 eV Core-core repulsion = 24571.437703 eV Total energy + Delta-G solvation = -3715.482690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.33012 -40.36686 -38.55541 -36.65108 -35.58532 -33.96763 -33.22832 -31.88201 -31.77039 -29.88626 -29.13784 -28.09248 -25.54750 -25.08644 -24.37620 -23.66372 -22.79713 -21.95086 -20.87528 -19.91991 -18.79149 -17.90692 -17.16511 -16.82857 -16.76602 -16.48187 -16.23698 -15.87652 -15.47850 -15.31614 -15.05245 -14.95638 -14.71350 -14.51706 -14.46254 -14.36451 -14.08902 -13.85696 -13.50587 -13.33919 -13.20629 -13.03103 -12.74179 -12.64211 -12.50091 -12.31520 -12.26308 -12.23268 -12.07675 -12.01442 -11.84731 -11.76942 -11.66896 -11.56393 -11.45956 -10.67916 -10.55843 -9.78782 -9.76111 -9.35919 -8.65740 -7.89086 -5.37169 0.46299 0.56186 1.49408 1.50850 1.58029 1.67060 2.08561 2.51477 2.88121 3.25283 3.49654 3.59622 3.77694 3.91324 4.03649 4.09626 4.12844 4.20665 4.24521 4.28374 4.38069 4.39473 4.48559 4.55022 4.58294 4.63600 4.64925 4.68078 4.69521 4.75335 4.77053 4.81856 4.85913 5.02970 5.08156 5.09837 5.11982 5.19642 5.21617 5.23914 5.30299 5.38602 5.42095 5.54396 5.60397 5.61153 5.67595 5.78560 5.80646 6.18049 6.35151 6.53588 7.10473 7.22174 7.78240 8.31852 9.15926 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.002503 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.113954 B =11183.558749 C =12394.553967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.127 4.127 6 C -0.087 4.087 7 C -0.027 4.027 8 H 0.067 0.933 9 C -0.141 4.141 10 C -0.124 4.124 11 C 0.510 3.490 12 O -0.580 6.580 13 N -0.605 5.605 14 C 0.096 3.904 15 C 0.162 3.838 16 N -0.608 5.608 17 C -0.266 4.266 18 H 0.068 0.932 19 C -0.046 4.046 20 N -0.933 5.933 21 Si 0.969 3.031 22 H -0.275 1.275 23 H -0.294 1.294 24 H -0.279 1.279 25 C 0.132 3.868 26 C 0.106 3.894 27 C -0.116 4.116 28 C -0.123 4.123 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.106 0.894 43 H -0.002 1.002 44 H 0.075 0.925 45 H 0.252 0.748 46 H 0.007 0.993 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.069 0.931 50 H 0.132 0.868 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.181 -9.674 0.653 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.142 4.142 5 C -0.145 4.145 6 C -0.087 4.087 7 C -0.046 4.046 8 H 0.085 0.915 9 C -0.198 4.198 10 C -0.163 4.163 11 C 0.300 3.700 12 O -0.461 6.461 13 N -0.337 5.337 14 C -0.028 4.028 15 C 0.035 3.965 16 N -0.332 5.332 17 C -0.396 4.396 18 H 0.086 0.914 19 C -0.242 4.242 20 N -0.579 5.579 21 Si 0.797 3.203 22 H -0.201 1.201 23 H -0.220 1.220 24 H -0.205 1.205 25 C 0.006 3.994 26 C -0.018 4.018 27 C -0.134 4.134 28 C -0.141 4.141 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.016 0.984 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.025 0.975 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.088 0.912 50 H 0.150 0.850 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.370 -9.346 0.345 23.327 hybrid contribution 1.321 0.245 0.128 1.349 sum -20.049 -9.102 0.473 22.023 Atomic orbital electron populations 1.21726 0.94254 1.02312 1.01842 1.20578 0.96508 0.91582 1.03483 1.20177 0.98943 0.97191 0.93093 1.21208 0.99964 0.94646 0.98421 1.21240 1.00055 0.95381 0.97798 1.19834 0.99932 0.95110 0.93846 1.19749 0.93062 0.91693 1.00102 0.91453 1.21866 0.98063 0.99751 1.00098 1.21764 0.97621 0.92688 1.04277 1.21148 0.80049 0.91372 0.77437 1.90591 1.59907 1.51051 1.44538 1.48180 1.19845 1.12004 1.53644 1.22542 0.93091 0.91357 0.95772 1.21109 0.91387 0.86763 0.97198 1.44250 1.19971 1.07342 1.61643 1.19477 0.91597 0.96507 1.32041 0.91393 1.25795 0.99837 0.97738 1.00798 1.70155 1.37009 1.09166 1.41521 0.85326 0.78873 0.76682 0.79434 1.20105 1.22036 1.20458 1.21356 0.91493 0.93438 0.93141 1.21979 0.94797 0.83645 1.01422 1.21164 0.99400 0.95065 0.97799 1.21257 0.99723 0.94775 0.98323 0.92855 0.93056 0.91233 0.90565 0.90316 0.84952 0.85929 0.92468 0.92580 0.91841 0.86815 0.88512 0.91139 0.87626 0.98396 0.90658 0.93860 0.97540 0.91046 0.89614 0.91247 0.84973 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.08 -1.05 6.06 29.85 0.18 -0.87 16 3 C -0.09 -1.61 5.13 -19.87 -0.10 -1.71 16 4 C -0.12 -2.29 9.70 22.27 0.22 -2.07 16 5 C -0.13 -2.64 9.67 22.27 0.22 -2.43 16 6 C -0.09 -1.86 4.78 -19.87 -0.09 -1.96 16 7 C -0.03 -0.64 2.21 -11.54 -0.03 -0.67 16 8 H 0.07 1.82 7.69 -2.38 -0.02 1.80 16 9 C -0.14 -3.26 8.75 71.98 0.63 -2.63 16 10 C -0.12 -3.07 3.25 29.85 0.10 -2.97 16 11 C 0.51 16.59 7.41 87.66 0.65 17.24 16 12 O -0.58 -21.76 13.37 -3.02 -0.04 -21.80 16 13 N -0.60 -20.94 2.94 -817.09 -2.40 -23.35 16 14 C 0.10 3.27 6.53 86.56 0.57 3.84 16 15 C 0.16 7.35 5.54 86.56 0.48 7.83 16 16 N -0.61 -29.82 2.97 -697.27 -2.07 -31.88 16 17 C -0.27 -14.17 9.58 84.03 0.80 -13.37 16 18 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16 19 C -0.05 -2.47 4.90 84.86 0.42 -2.06 16 20 N -0.93 -53.20 11.20 21.65 0.24 -52.96 16 21 Si 0.97 43.28 29.59 68.60 2.03 45.31 16 22 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 25 C 0.13 5.58 6.67 86.43 0.58 6.15 16 26 C 0.11 3.82 6.59 86.43 0.57 4.39 16 27 C -0.12 -2.20 8.76 22.27 0.20 -2.00 16 28 C -0.12 -2.12 9.70 22.27 0.22 -1.90 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.86 8.08 -2.38 -0.02 0.84 16 33 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 34 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.12 2.40 7.95 -2.91 -0.02 2.38 16 36 H 0.06 1.61 5.95 -2.39 -0.01 1.59 16 37 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.26 7.39 -2.39 -0.02 1.24 16 39 H 0.11 2.30 7.33 -2.39 -0.02 2.28 16 40 H 0.10 2.39 7.73 -2.39 -0.02 2.37 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.11 2.87 5.91 -2.39 -0.01 2.86 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.08 3.80 5.98 -2.38 -0.01 3.79 16 45 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 46 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.07 2.87 7.94 -2.39 -0.02 2.85 16 48 H 0.09 3.03 6.99 -2.39 -0.02 3.02 16 49 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.13 2.11 7.16 -2.91 -0.02 2.09 16 51 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -64.70 398.20 4.95 -59.75 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.89 Total: 20.97 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.30 Total: 3.96 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -4.23 Total: -108.19 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.04 Total: -21.80 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -64.70 4.95 -59.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073101189.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.588 kcal (2) G-P(sol) polarization free energy of solvation -64.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds