Wall clock time and date at job start Tue Mar 31 2020 16:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46762 * 2 1 4 4 C 1.38242 * 119.99892 * 90.00500 * 3 2 1 5 5 C 1.38231 * 119.99919 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00056 * 359.94889 * 5 4 3 7 7 C 1.50706 * 120.00027 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46978 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47473 * 240.00297 * 7 6 5 10 10 C 1.53002 * 109.46925 * 120.00236 * 7 6 5 11 11 C 1.50697 * 109.47130 * 185.00133 * 10 7 6 12 12 O 1.21283 * 120.00102 * 0.02562 * 11 10 7 13 13 N 1.34781 * 119.99677 * 179.97438 * 11 10 7 14 14 C 1.46961 * 120.59420 * 359.72560 * 13 11 10 15 15 C 1.53819 * 108.39654 * 124.75632 * 14 13 11 16 16 N 1.46964 * 108.57889 * 49.63637 * 15 14 13 17 17 C 1.36933 * 120.59643 * 124.62794 * 16 15 14 18 18 H 1.08002 * 120.00453 * 208.17595 * 17 16 15 19 19 C 1.38821 * 119.99919 * 28.17023 * 17 16 15 20 20 N 1.31618 * 119.99711 * 17.57041 * 19 17 16 21 21 Si 1.86791 * 120.00022 * 197.57208 * 19 17 16 22 22 H 1.48510 * 109.47323 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47170 * 119.99973 * 21 19 17 24 24 H 1.48504 * 109.47375 * 240.00056 * 21 19 17 25 25 C 1.46966 * 118.81033 * 304.64156 * 16 15 14 26 26 C 1.46966 * 120.58807 * 179.97438 * 13 11 10 27 27 C 1.38235 * 120.00223 * 0.28412 * 6 5 4 28 28 C 1.38237 * 120.00056 * 269.97538 * 3 2 1 29 29 H 1.08996 * 109.46923 * 59.99982 * 1 2 3 30 30 H 1.09002 * 109.46565 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47154 * 299.99360 * 1 2 3 32 32 H 1.09001 * 109.46802 * 240.00273 * 2 1 3 33 33 H 1.08997 * 109.47350 * 120.00340 * 2 1 3 34 34 H 1.07999 * 119.99801 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00184 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.46962 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.46922 * 59.99811 * 9 7 6 38 38 H 1.09000 * 109.47340 * 300.00172 * 9 7 6 39 39 H 1.09000 * 109.47371 * 305.00546 * 10 7 6 40 40 H 1.08998 * 109.46732 * 65.00053 * 10 7 6 41 41 H 1.08994 * 109.60821 * 244.53402 * 14 13 11 42 42 H 1.08991 * 109.61273 * 5.04990 * 14 13 11 43 43 H 1.08998 * 109.73838 * 289.84532 * 15 14 13 44 44 H 1.08993 * 109.53263 * 169.29973 * 15 14 13 45 45 H 0.97003 * 119.99781 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.61199 * 295.48686 * 25 16 15 47 47 H 1.08998 * 109.74827 * 175.05635 * 25 16 15 48 48 H 1.08993 * 109.61227 * 354.95242 * 26 13 11 49 49 H 1.09003 * 109.60901 * 115.29148 * 26 13 11 50 50 H 1.07997 * 119.99966 * 179.72982 * 27 6 5 51 51 H 1.07996 * 120.00192 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9557 4.0267 0.0001 7 6 3.4591 5.4473 0.0001 8 1 3.5800 5.7898 1.0278 9 6 2.4525 6.3451 -0.7221 10 6 4.8074 5.5105 -0.7202 11 6 5.3689 6.9049 -0.6138 12 8 4.7516 7.7635 -0.0199 13 7 6.5575 7.1976 -1.1778 14 6 7.3198 6.1655 -1.8944 15 6 7.6120 6.6766 -3.3154 16 7 8.1718 8.0321 -3.2196 17 6 9.3798 8.3294 -3.7918 18 1 9.9960 9.1130 -3.3763 19 6 9.8124 7.6234 -4.9061 20 7 8.9524 6.9269 -5.6185 21 14 11.6150 7.6619 -5.3941 22 1 12.3691 8.5105 -4.4367 23 1 12.1639 6.2822 -5.3705 24 1 11.7455 8.2232 -6.7628 25 6 7.4120 9.0628 -2.4982 26 6 7.1169 8.5533 -1.0825 27 6 2.7207 3.3768 -1.1971 28 6 2.2631 2.0723 -1.1972 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0824 1.5634 2.1325 35 1 2.9036 3.8848 2.1325 36 1 2.8164 7.3725 -0.7216 37 1 1.4919 6.3000 -0.2089 38 1 2.3318 6.0024 -1.7497 39 1 5.4987 4.8044 -0.2601 40 1 4.6706 5.2530 -1.7705 41 1 8.2569 5.9740 -1.3718 42 1 6.7334 5.2482 -1.9473 43 1 6.6889 6.7021 -3.8945 44 1 8.3321 6.0168 -3.7991 45 1 9.2547 6.4338 -6.3973 46 1 6.4747 9.2581 -3.0192 47 1 7.9976 9.9804 -2.4422 48 1 6.3966 9.2131 -0.5991 49 1 8.0384 8.5287 -0.5006 50 1 2.8976 3.8871 -2.1323 51 1 2.0831 1.5633 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073101191.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:18 Heat of formation + Delta-G solvation = -3.913987 kcal Electronic energy + Delta-G solvation = -28312.126313 eV Core-core repulsion = 24597.217913 eV Total energy + Delta-G solvation = -3714.908400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.15882 -39.36312 -37.00951 -35.69698 -33.86773 -33.16714 -31.46819 -31.02374 -30.22053 -28.93729 -27.96764 -26.51913 -24.49142 -23.60319 -22.92340 -22.83171 -21.79499 -20.63621 -19.79290 -18.45341 -17.35458 -16.40402 -16.00398 -15.86618 -15.29369 -15.11759 -15.09023 -14.74909 -14.13744 -13.99176 -13.76597 -13.75124 -13.62783 -13.37210 -13.30915 -13.18654 -13.13578 -12.70997 -12.50137 -12.12625 -11.90641 -11.73073 -11.58061 -11.45012 -11.32456 -11.12357 -11.03634 -10.86991 -10.77496 -10.74227 -10.59699 -10.49171 -10.25451 -10.01344 -9.85317 -9.27527 -9.00165 -8.62054 -8.58527 -8.22639 -6.73793 -5.88553 -3.32471 1.23363 1.32107 3.01167 3.31486 3.39875 3.41597 3.45610 3.66840 4.42020 4.51106 4.59962 4.67988 4.81566 4.91729 5.05672 5.07900 5.10519 5.15417 5.25741 5.27413 5.32889 5.38721 5.41636 5.50717 5.60818 5.69820 5.70641 5.77981 5.79039 5.85854 5.87330 5.94278 5.97492 5.98430 6.06375 6.11949 6.19548 6.22010 6.32067 6.33775 6.42103 6.49323 6.51365 6.64084 6.77151 6.91994 6.93254 7.19506 7.43308 7.70255 7.93859 8.33060 8.59222 9.09373 9.71995 10.29031 11.19222 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002491 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.040761 B =11239.180051 C =12408.490975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.076 4.076 7 C -0.034 4.034 8 H 0.083 0.917 9 C -0.148 4.148 10 C -0.131 4.131 11 C 0.511 3.489 12 O -0.558 6.558 13 N -0.597 5.597 14 C 0.079 3.921 15 C 0.158 3.842 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.132 3.868 26 C 0.095 3.905 27 C -0.110 4.110 28 C -0.116 4.116 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.024 0.976 44 H 0.100 0.900 45 H 0.255 0.745 46 H 0.023 0.977 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.061 0.939 50 H 0.123 0.877 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.929 -11.837 11.550 21.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.136 4.136 5 C -0.132 4.132 6 C -0.076 4.076 7 C -0.052 4.052 8 H 0.102 0.898 9 C -0.205 4.205 10 C -0.171 4.171 11 C 0.299 3.701 12 O -0.438 6.438 13 N -0.329 5.329 14 C -0.045 4.045 15 C 0.031 3.969 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.005 3.995 26 C -0.029 4.029 27 C -0.128 4.128 28 C -0.134 4.134 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.118 0.882 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.079 0.921 50 H 0.141 0.859 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.185 -11.461 11.685 21.659 hybrid contribution 1.046 -0.152 -0.473 1.158 sum -13.139 -11.612 11.213 20.813 Atomic orbital electron populations 1.21748 0.94850 1.01547 1.02229 1.20528 0.96087 0.92854 1.02713 1.19863 0.99765 0.96193 0.93286 1.20967 1.00342 0.94892 0.97366 1.21063 0.99806 0.94729 0.97598 1.19938 0.98754 0.95726 0.93155 1.19872 0.93508 0.90763 1.01095 0.89816 1.21949 0.97961 1.01296 0.99264 1.21740 0.97256 0.95145 1.02955 1.20542 0.80802 0.90262 0.78470 1.90596 1.59310 1.49849 1.44036 1.48097 1.19607 1.12054 1.53178 1.22778 0.95143 0.89716 0.96908 1.21258 0.98258 0.87739 0.89639 1.43993 1.20529 1.04480 1.62414 1.19250 0.93206 1.19109 1.06783 0.91429 1.25071 0.98159 1.01065 0.95342 1.70026 1.32337 1.35028 1.17254 0.86207 0.84922 0.77485 0.78056 1.20202 1.21470 1.21674 1.21281 0.95407 0.92699 0.90117 1.22174 0.97899 0.83055 0.99743 1.21046 0.99207 0.94611 0.97900 1.21010 1.00027 0.94889 0.97439 0.92541 0.92533 0.92621 0.91111 0.91219 0.86419 0.86165 0.90078 0.93086 0.93138 0.89168 0.88817 0.91835 0.90969 0.95836 0.88221 0.93540 0.95919 0.91596 0.90032 0.92113 0.85928 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.08 -0.62 6.06 -27.88 -0.17 -0.78 16 3 C -0.09 -0.86 5.13 -104.62 -0.54 -1.40 16 4 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 5 C -0.11 -1.20 9.67 -39.58 -0.38 -1.58 16 6 C -0.08 -0.86 4.78 -104.62 -0.50 -1.36 16 7 C -0.03 -0.42 2.21 -91.77 -0.20 -0.62 16 8 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 9 C -0.15 -1.89 8.74 37.15 0.32 -1.57 16 10 C -0.13 -1.73 3.26 -27.88 -0.09 -1.83 16 11 C 0.51 8.60 7.41 -10.99 -0.08 8.51 16 12 O -0.56 -10.59 13.37 5.56 0.07 -10.52 16 13 N -0.60 -10.68 2.94 -172.24 -0.51 -11.19 16 14 C 0.08 1.39 6.54 -3.36 -0.02 1.37 16 15 C 0.16 3.53 5.53 -3.36 -0.02 3.51 16 16 N -0.59 -14.31 2.97 -171.79 -0.51 -14.82 16 17 C -0.25 -6.72 9.58 -15.06 -0.14 -6.86 16 18 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 19 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 20 N -0.90 -25.17 11.20 55.49 0.62 -24.55 16 21 Si 0.90 20.98 29.59 -169.99 -5.03 15.95 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.13 2.76 6.67 -3.62 -0.02 2.73 16 26 C 0.10 1.76 6.59 -3.62 -0.02 1.73 16 27 C -0.11 -1.19 8.76 -39.58 -0.35 -1.54 16 28 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 1.11 7.95 -52.49 -0.42 0.70 16 36 H 0.08 1.23 5.95 -51.93 -0.31 0.92 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.61 7.37 -51.93 -0.38 0.23 16 39 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 40 H 0.09 1.19 7.17 -51.93 -0.37 0.82 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.07 5.91 -51.93 -0.31 0.76 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 2.46 5.99 -51.93 -0.31 2.15 16 45 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 1.32 7.94 -51.93 -0.41 0.90 16 48 H 0.08 1.47 6.99 -51.93 -0.36 1.10 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.12 1.26 7.16 -52.49 -0.38 0.89 16 51 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 398.19 15.07 6.00 6.00 Total: -1.00 -29.92 398.19 -10.73 -40.65 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.68 Total: 1.83 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.71 Total: -3.35 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.39 Total: -50.55 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.52 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.92 -10.73 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073101191.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.733 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds