Wall clock time and date at job start Tue Mar 31 2020 16:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46762 * 2 1 4 4 C 1.38242 * 119.99892 * 90.00500 * 3 2 1 5 5 C 1.38231 * 119.99919 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00056 * 359.94889 * 5 4 3 7 7 C 1.50706 * 120.00027 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46978 * 0.02562 * 7 6 5 9 9 C 1.52995 * 109.47473 * 240.00297 * 7 6 5 10 10 C 1.53002 * 109.46925 * 120.00236 * 7 6 5 11 11 C 1.50697 * 109.47130 * 185.00133 * 10 7 6 12 12 O 1.21283 * 120.00102 * 0.02562 * 11 10 7 13 13 N 1.34781 * 119.99677 * 179.97438 * 11 10 7 14 14 C 1.46961 * 120.59420 * 359.72560 * 13 11 10 15 15 C 1.53819 * 108.39654 * 124.75632 * 14 13 11 16 16 N 1.46964 * 108.57889 * 49.63637 * 15 14 13 17 17 C 1.36933 * 120.59643 * 124.62794 * 16 15 14 18 18 H 1.08002 * 120.00453 * 208.17595 * 17 16 15 19 19 C 1.38821 * 119.99919 * 28.17023 * 17 16 15 20 20 N 1.31618 * 119.99711 * 17.57041 * 19 17 16 21 21 Si 1.86791 * 120.00022 * 197.57208 * 19 17 16 22 22 H 1.48510 * 109.47323 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47170 * 119.99973 * 21 19 17 24 24 H 1.48504 * 109.47375 * 240.00056 * 21 19 17 25 25 C 1.46966 * 118.81033 * 304.64156 * 16 15 14 26 26 C 1.46966 * 120.58807 * 179.97438 * 13 11 10 27 27 C 1.38235 * 120.00223 * 0.28412 * 6 5 4 28 28 C 1.38237 * 120.00056 * 269.97538 * 3 2 1 29 29 H 1.08996 * 109.46923 * 59.99982 * 1 2 3 30 30 H 1.09002 * 109.46565 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47154 * 299.99360 * 1 2 3 32 32 H 1.09001 * 109.46802 * 240.00273 * 2 1 3 33 33 H 1.08997 * 109.47350 * 120.00340 * 2 1 3 34 34 H 1.07999 * 119.99801 * 359.97438 * 4 3 2 35 35 H 1.08002 * 120.00184 * 179.97438 * 5 4 3 36 36 H 1.08999 * 109.46962 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.46922 * 59.99811 * 9 7 6 38 38 H 1.09000 * 109.47340 * 300.00172 * 9 7 6 39 39 H 1.09000 * 109.47371 * 305.00546 * 10 7 6 40 40 H 1.08998 * 109.46732 * 65.00053 * 10 7 6 41 41 H 1.08994 * 109.60821 * 244.53402 * 14 13 11 42 42 H 1.08991 * 109.61273 * 5.04990 * 14 13 11 43 43 H 1.08998 * 109.73838 * 289.84532 * 15 14 13 44 44 H 1.08993 * 109.53263 * 169.29973 * 15 14 13 45 45 H 0.97003 * 119.99781 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.61199 * 295.48686 * 25 16 15 47 47 H 1.08998 * 109.74827 * 175.05635 * 25 16 15 48 48 H 1.08993 * 109.61227 * 354.95242 * 26 13 11 49 49 H 1.09003 * 109.60901 * 115.29148 * 26 13 11 50 50 H 1.07997 * 119.99966 * 179.72982 * 27 6 5 51 51 H 1.07996 * 120.00192 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9557 4.0267 0.0001 7 6 3.4591 5.4473 0.0001 8 1 3.5800 5.7898 1.0278 9 6 2.4525 6.3451 -0.7221 10 6 4.8074 5.5105 -0.7202 11 6 5.3689 6.9049 -0.6138 12 8 4.7516 7.7635 -0.0199 13 7 6.5575 7.1976 -1.1778 14 6 7.3198 6.1655 -1.8944 15 6 7.6120 6.6766 -3.3154 16 7 8.1718 8.0321 -3.2196 17 6 9.3798 8.3294 -3.7918 18 1 9.9960 9.1130 -3.3763 19 6 9.8124 7.6234 -4.9061 20 7 8.9524 6.9269 -5.6185 21 14 11.6150 7.6619 -5.3941 22 1 12.3691 8.5105 -4.4367 23 1 12.1639 6.2822 -5.3705 24 1 11.7455 8.2232 -6.7628 25 6 7.4120 9.0628 -2.4982 26 6 7.1169 8.5533 -1.0825 27 6 2.7207 3.3768 -1.1971 28 6 2.2631 2.0723 -1.1972 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.0824 1.5634 2.1325 35 1 2.9036 3.8848 2.1325 36 1 2.8164 7.3725 -0.7216 37 1 1.4919 6.3000 -0.2089 38 1 2.3318 6.0024 -1.7497 39 1 5.4987 4.8044 -0.2601 40 1 4.6706 5.2530 -1.7705 41 1 8.2569 5.9740 -1.3718 42 1 6.7334 5.2482 -1.9473 43 1 6.6889 6.7021 -3.8945 44 1 8.3321 6.0168 -3.7991 45 1 9.2547 6.4338 -6.3973 46 1 6.4747 9.2581 -3.0192 47 1 7.9976 9.9804 -2.4422 48 1 6.3966 9.2131 -0.5991 49 1 8.0384 8.5287 -0.5006 50 1 2.8976 3.8871 -2.1323 51 1 2.0831 1.5633 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073101191.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:17 Heat of formation + Delta-G solvation = -17.170661 kcal Electronic energy + Delta-G solvation = -28312.701166 eV Core-core repulsion = 24597.217913 eV Total energy + Delta-G solvation = -3715.483253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.33124 -40.36786 -38.55676 -36.65233 -35.58664 -33.96717 -33.23116 -31.88367 -31.77057 -29.88795 -29.15035 -28.09181 -25.55881 -25.08689 -24.37475 -23.66461 -22.81389 -21.93165 -20.85269 -19.94398 -18.80618 -17.89734 -17.22531 -16.78660 -16.68564 -16.47037 -16.26608 -15.89721 -15.47542 -15.36514 -15.09831 -14.89663 -14.72612 -14.52194 -14.47379 -14.35497 -14.07491 -13.83163 -13.52497 -13.34293 -13.22143 -13.03933 -12.74496 -12.70870 -12.48009 -12.33285 -12.25542 -12.20543 -12.05445 -12.02249 -11.85507 -11.76826 -11.65061 -11.55816 -11.45648 -10.70288 -10.55791 -9.79029 -9.76161 -9.36084 -8.65821 -7.89372 -5.37093 0.46082 0.56144 1.47180 1.50314 1.60158 1.66912 2.08431 2.51104 2.87912 3.25171 3.49579 3.59623 3.78117 3.91323 4.03639 4.09059 4.12382 4.20745 4.24250 4.28537 4.37891 4.39549 4.49087 4.55061 4.58262 4.63487 4.64692 4.67413 4.69648 4.75696 4.76313 4.82019 4.85036 5.01688 5.08101 5.10059 5.11876 5.19017 5.21342 5.24091 5.29933 5.37473 5.41809 5.54165 5.60604 5.61495 5.67619 5.78737 5.80851 6.17919 6.35195 6.53452 7.10518 7.22045 7.78146 8.31659 9.15855 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002491 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.040761 B =11239.180051 C =12408.490975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.122 4.122 5 C -0.122 4.122 6 C -0.086 4.086 7 C -0.025 4.025 8 H 0.076 0.924 9 C -0.143 4.143 10 C -0.125 4.125 11 C 0.510 3.490 12 O -0.579 6.579 13 N -0.605 5.605 14 C 0.096 3.904 15 C 0.163 3.837 16 N -0.609 5.609 17 C -0.264 4.264 18 H 0.068 0.932 19 C -0.046 4.046 20 N -0.932 5.932 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.287 1.287 24 H -0.295 1.295 25 C 0.133 3.867 26 C 0.106 3.894 27 C -0.119 4.119 28 C -0.125 4.125 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.000 1.000 44 H 0.075 0.925 45 H 0.252 0.748 46 H 0.008 0.992 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.068 0.932 50 H 0.124 0.876 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.082 -13.544 12.810 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.086 4.086 7 C -0.044 4.044 8 H 0.094 0.906 9 C -0.201 4.201 10 C -0.164 4.164 11 C 0.300 3.700 12 O -0.460 6.460 13 N -0.337 5.337 14 C -0.028 4.028 15 C 0.036 3.964 16 N -0.332 5.332 17 C -0.394 4.394 18 H 0.086 0.914 19 C -0.242 4.242 20 N -0.578 5.578 21 Si 0.796 3.204 22 H -0.193 1.193 23 H -0.213 1.213 24 H -0.222 1.222 25 C 0.006 3.994 26 C -0.019 4.019 27 C -0.137 4.137 28 C -0.142 4.142 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.018 0.982 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.026 0.974 47 H 0.089 0.911 48 H 0.104 0.896 49 H 0.086 0.914 50 H 0.142 0.858 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.353 -13.164 12.972 23.400 hybrid contribution 1.003 0.408 -0.861 1.383 sum -13.350 -12.756 12.111 22.082 Atomic orbital electron populations 1.21733 0.94357 1.02310 1.01805 1.20577 0.96426 0.91589 1.03525 1.20172 0.98893 0.97198 0.93045 1.21226 0.99818 0.94653 0.98327 1.21243 0.99788 0.95263 0.97688 1.19819 0.99999 0.95051 0.93778 1.19745 0.92823 0.91554 1.00276 0.90582 1.21881 0.98461 0.99845 0.99877 1.21768 0.97948 0.92895 1.03793 1.21147 0.79936 0.91444 0.77473 1.90593 1.59596 1.50976 1.44885 1.48177 1.20162 1.11775 1.53559 1.22549 0.96139 0.90514 0.93621 1.21106 0.96232 0.86852 0.92180 1.44262 1.20495 1.05856 1.62624 1.19537 0.94124 1.18943 1.06788 0.91428 1.25783 1.01721 1.01189 0.95511 1.70165 1.33926 1.36006 1.17688 0.85210 0.80516 0.77381 0.77303 1.19258 1.21298 1.22210 1.21338 0.94380 0.92534 0.91136 1.21967 0.98412 0.83710 0.97779 1.21142 0.99617 0.95154 0.97830 1.21232 0.99906 0.94721 0.98390 0.93132 0.91214 0.92882 0.90522 0.90229 0.84577 0.85318 0.92662 0.92338 0.92643 0.87368 0.88033 0.91313 0.87641 0.98152 0.90707 0.93878 0.97409 0.91070 0.89588 0.91365 0.85834 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.08 -1.02 6.06 29.85 0.18 -0.84 16 3 C -0.09 -1.56 5.13 -19.86 -0.10 -1.66 16 4 C -0.12 -2.08 9.70 22.27 0.22 -1.86 16 5 C -0.12 -2.34 9.67 22.27 0.22 -2.12 16 6 C -0.09 -1.82 4.78 -19.86 -0.09 -1.92 16 7 C -0.03 -0.59 2.21 -11.54 -0.03 -0.62 16 8 H 0.08 1.91 7.69 -2.39 -0.02 1.89 16 9 C -0.14 -3.61 8.74 71.98 0.63 -2.98 16 10 C -0.12 -3.08 3.26 29.85 0.10 -2.99 16 11 C 0.51 16.59 7.41 87.66 0.65 17.24 16 12 O -0.58 -21.70 13.37 -3.04 -0.04 -21.74 16 13 N -0.60 -20.96 2.94 -817.24 -2.40 -23.37 16 14 C 0.10 3.26 6.54 86.57 0.57 3.82 16 15 C 0.16 7.34 5.53 86.57 0.48 7.82 16 16 N -0.61 -29.71 2.97 -697.41 -2.07 -31.78 16 17 C -0.26 -14.02 9.58 84.04 0.80 -13.22 16 18 H 0.07 3.52 7.89 -2.91 -0.02 3.49 16 19 C -0.05 -2.49 4.90 84.86 0.42 -2.07 16 20 N -0.93 -52.89 11.20 21.65 0.24 -52.65 16 21 Si 0.97 43.29 29.59 68.60 2.03 45.32 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 25 C 0.13 5.57 6.67 86.40 0.58 6.14 16 26 C 0.11 3.81 6.59 86.40 0.57 4.38 16 27 C -0.12 -2.42 8.76 22.27 0.20 -2.23 16 28 C -0.12 -2.27 9.70 22.27 0.22 -2.05 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 33 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 34 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.13 2.16 7.95 -2.91 -0.02 2.14 16 36 H 0.05 1.68 5.95 -2.39 -0.01 1.67 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.31 7.37 -2.39 -0.02 1.29 16 39 H 0.11 2.33 7.90 -2.39 -0.02 2.31 16 40 H 0.10 2.40 7.17 -2.39 -0.02 2.38 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.11 2.88 5.91 -2.39 -0.01 2.86 16 43 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.07 3.76 5.99 -2.39 -0.01 3.75 16 45 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 46 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.07 2.85 7.94 -2.39 -0.02 2.83 16 48 H 0.09 3.04 6.99 -2.39 -0.02 3.02 16 49 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.12 2.40 7.16 -2.91 -0.02 2.38 16 51 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -64.15 398.19 4.95 -59.20 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.89 Total: 21.05 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.30 Total: 3.96 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.23 Total: -107.80 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.04 Total: -21.74 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -64.15 4.95 -59.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073101191.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.026 kcal (2) G-P(sol) polarization free energy of solvation -64.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds