Wall clock time and date at job start Tue Mar 31 2020 15:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47170 * 2 1 4 4 N 1.46499 * 109.46839 * 119.99655 * 2 1 3 5 5 C 1.38848 * 120.00670 * 274.99448 * 4 2 1 6 6 C 1.39574 * 119.83795 * 359.73853 * 5 4 2 7 7 C 1.36343 * 120.15810 * 179.71716 * 6 5 4 8 8 C 1.40884 * 119.83794 * 0.54250 * 7 6 5 9 9 C 1.41133 * 120.15643 * 179.70079 * 8 7 6 10 10 H 1.08005 * 120.00079 * 155.11541 * 9 8 7 11 11 C 1.39863 * 120.00324 * 335.11322 * 9 8 7 12 12 N 1.30905 * 119.99848 * 342.13288 * 11 9 8 13 13 Si 1.86803 * 120.00215 * 162.12448 * 11 9 8 14 14 H 1.48498 * 109.46634 * 94.65549 * 13 11 9 15 15 H 1.48492 * 109.47159 * 214.65715 * 13 11 9 16 16 H 1.48499 * 109.47212 * 334.66006 * 13 11 9 17 17 C 1.40887 * 119.68566 * 359.72831 * 8 7 6 18 18 C 1.36334 * 119.84246 * 359.97438 * 17 8 7 19 19 C 1.50696 * 109.47050 * 239.99782 * 2 1 3 20 20 O 1.21283 * 120.00418 * 239.99621 * 19 2 1 21 21 N 1.34781 * 119.99808 * 59.72718 * 19 2 1 22 22 C 1.46501 * 120.00196 * 180.27285 * 21 19 2 23 23 C 1.53003 * 109.47147 * 275.00127 * 22 21 19 24 24 C 1.53001 * 109.47141 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47060 * 59.99626 * 24 23 22 26 26 C 1.53001 * 109.47060 * 180.02562 * 25 24 23 27 27 C 1.53003 * 109.47449 * 300.00185 * 25 24 23 28 28 C 1.52992 * 109.47389 * 154.99927 * 22 21 19 29 29 H 1.09001 * 109.46988 * 300.00300 * 1 2 3 30 30 H 1.09002 * 109.47414 * 59.99675 * 1 2 3 31 31 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99339 * 95.00379 * 4 2 1 33 33 H 1.07992 * 119.91952 * 359.96993 * 6 5 4 34 34 H 1.08003 * 120.08130 * 180.27178 * 7 6 5 35 35 H 0.97000 * 119.99977 * 179.97438 * 12 11 9 36 36 H 1.08006 * 120.07682 * 180.02562 * 17 8 7 37 37 H 1.07994 * 119.92543 * 179.97438 * 18 17 8 38 38 H 0.97000 * 119.99970 * 0.27498 * 21 19 2 39 39 H 1.08999 * 109.46533 * 34.99759 * 22 21 19 40 40 H 1.08998 * 109.46967 * 299.99821 * 23 22 21 41 41 H 1.09001 * 109.46856 * 59.99605 * 23 22 21 42 42 H 1.08999 * 109.46740 * 299.99754 * 24 23 22 43 43 H 1.08993 * 109.47122 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.46867 * 60.00040 * 25 24 23 45 45 H 1.08994 * 109.46989 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47019 * 300.00494 * 26 25 24 47 47 H 1.08998 * 109.47248 * 60.00272 * 26 25 24 48 48 H 1.08998 * 109.46967 * 299.99793 * 27 25 24 49 49 H 1.08994 * 109.47124 * 179.97438 * 27 25 24 50 50 H 1.09003 * 109.47298 * 300.00153 * 28 22 21 51 51 H 1.08998 * 109.47048 * 59.99981 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.1510 0.0021 2.3923 6 6 1.8234 1.3576 2.4498 7 6 1.9458 2.0427 3.6223 8 6 2.4150 1.3818 4.7746 9 6 2.5503 2.0860 5.9902 10 1 2.5120 1.5543 6.9295 11 6 2.7340 3.4725 5.9786 12 7 3.1271 4.0714 4.8830 13 14 2.4184 4.4695 7.5264 14 1 3.6938 4.6556 8.2639 15 1 1.8627 5.7958 7.1561 16 1 1.4480 3.7497 8.3897 17 6 2.7491 0.0148 4.7076 18 6 2.6160 -0.6592 3.5300 19 6 2.0323 -0.7104 -1.2304 20 8 2.7296 -1.6965 -1.1192 21 7 1.7021 -0.2532 -2.4545 22 6 2.1854 -0.9473 -3.6507 23 6 3.5869 -0.4434 -4.0014 24 6 4.0920 -1.1688 -5.2503 25 6 3.1436 -0.8930 -6.4188 26 6 3.6483 -1.6189 -7.6675 27 6 1.7421 -1.3968 -6.0681 28 6 1.2370 -0.6709 -4.8190 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2489 -1.6317 1.1526 33 1 1.4683 1.8640 1.5645 34 1 1.6878 3.0905 3.6664 35 1 3.2542 5.0330 4.8748 36 1 3.1091 -0.4982 5.5872 37 1 2.8721 -1.7070 3.4770 38 1 1.1445 0.5355 -2.5435 39 1 2.2224 -2.0195 -3.4585 40 1 3.5500 0.6288 -4.1936 41 1 4.2626 -0.6403 -3.1691 42 1 4.1290 -2.2410 -5.0576 43 1 5.0905 -0.8102 -5.4999 44 1 3.1066 0.1792 -6.6113 45 1 2.9729 -1.4220 -8.5000 46 1 4.6468 -1.2603 -7.9175 47 1 3.6850 -2.6910 -7.4746 48 1 1.7791 -2.4690 -5.8755 49 1 1.0664 -1.1999 -6.9003 50 1 0.2386 -1.0299 -4.5692 51 1 1.2001 0.4013 -5.0111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073644118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:03 Heat of formation + Delta-G solvation = -43.001198 kcal Electronic energy + Delta-G solvation = -27763.448722 eV Core-core repulsion = 24046.845373 eV Total energy + Delta-G solvation = -3716.603349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.32205 -38.78239 -37.74583 -35.26203 -34.79771 -33.22506 -31.63331 -31.12056 -30.21813 -29.42632 -27.98499 -26.33364 -24.76819 -23.46067 -23.06516 -21.65507 -21.17457 -20.53463 -20.17653 -19.40326 -17.42025 -17.20452 -16.67029 -15.79678 -15.29302 -15.20771 -14.88365 -14.64939 -14.57990 -14.45831 -13.99420 -13.72585 -13.43215 -13.12807 -12.99981 -12.63417 -12.55382 -12.53271 -12.45153 -12.25795 -11.96417 -11.93692 -11.68062 -11.57272 -11.46304 -11.26998 -11.11606 -11.04129 -11.00595 -10.80641 -10.67922 -10.46333 -10.44697 -9.70374 -9.65252 -9.27610 -9.23641 -9.13594 -8.56482 -7.48202 -6.63181 -6.38315 -4.02104 2.66278 2.91045 3.01262 3.11438 3.15474 3.20743 3.36717 4.06422 4.29760 4.31677 4.33903 4.49852 4.69936 4.76031 4.78787 4.84164 5.03959 5.14626 5.15434 5.19386 5.27773 5.30822 5.36528 5.42245 5.47157 5.57932 5.67457 5.69364 5.77786 5.82170 5.84462 5.87557 5.91199 5.94443 6.05527 6.14425 6.25309 6.33973 6.35957 6.39759 6.90998 6.94219 7.21089 7.36998 7.38669 7.57387 7.70506 7.85826 8.16060 8.19847 8.30616 8.49978 8.72731 8.82098 9.07325 9.16393 10.38400 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.002007 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.762387 B =13948.038025 C =14219.149684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.098 0.902 4 N -0.742 5.742 5 C 0.095 3.905 6 C -0.167 4.167 7 C -0.124 4.124 8 C 0.074 3.926 9 C -0.466 4.466 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.808 5.808 13 Si 0.902 3.098 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.184 4.184 18 C -0.155 4.155 19 C 0.514 3.486 20 O -0.535 6.535 21 N -0.729 5.729 22 C 0.146 3.854 23 C -0.131 4.131 24 C -0.111 4.111 25 C -0.095 4.095 26 C -0.148 4.148 27 C -0.110 4.110 28 C -0.126 4.126 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.394 0.606 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.275 0.725 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.400 0.600 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -5.599 -22.820 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.033 3.967 3 H 0.115 0.885 4 N -0.379 5.379 5 C -0.002 4.002 6 C -0.189 4.189 7 C -0.144 4.144 8 C 0.071 3.929 9 C -0.497 4.497 10 H 0.090 0.910 11 C -0.140 4.140 12 N -0.435 5.435 13 Si 0.727 3.273 14 H -0.199 1.199 15 H -0.203 1.203 16 H -0.187 1.187 17 C -0.205 4.205 18 C -0.177 4.177 19 C 0.300 3.700 20 O -0.410 6.410 21 N -0.382 5.382 22 C 0.042 3.958 23 C -0.170 4.170 24 C -0.149 4.149 25 C -0.113 4.113 26 C -0.205 4.205 27 C -0.148 4.148 28 C -0.164 4.164 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.229 0.771 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.234 0.766 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.649 -5.945 -22.885 23.925 hybrid contribution -0.163 0.687 0.572 0.909 sum -3.812 -5.258 -22.313 23.239 Atomic orbital electron populations 1.22271 0.94773 1.02521 1.02602 1.20414 0.94416 0.97410 0.84430 0.88487 1.43638 1.76895 1.11678 1.05648 1.17311 1.05986 0.91700 0.85203 1.20090 1.08445 0.92382 0.97934 1.20910 1.01424 0.99843 0.92232 1.17502 0.90959 0.90996 0.93441 1.19360 1.44998 0.91721 0.93651 0.90960 1.25792 0.92579 0.98450 0.97224 1.69860 1.34071 1.11101 1.28516 0.86416 0.79385 0.79110 0.82416 1.19881 1.20315 1.18673 1.20555 1.07932 0.95983 0.95992 1.19816 1.07234 0.97731 0.92939 1.21089 0.79550 0.84512 0.84871 1.90665 1.37408 1.26354 1.86602 1.46086 1.54292 1.32388 1.05387 1.20946 0.93188 0.97946 0.83745 1.21936 0.96619 1.00234 0.98173 1.21551 0.98594 1.00847 0.93926 1.21188 0.94868 1.00283 0.94986 1.21828 1.00956 1.00558 0.97172 1.21544 0.96148 1.00260 0.96830 1.21816 0.98814 1.01329 0.94480 0.90538 0.92508 0.92366 0.77104 0.89392 0.86416 0.91380 0.88991 0.89446 0.76592 0.89585 0.91780 0.91235 0.91744 0.91725 0.91137 0.92767 0.92689 0.92653 0.91650 0.91550 0.91249 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.31 37.16 0.35 -1.68 16 2 C 0.14 2.15 2.67 -69.09 -0.18 1.97 16 3 H 0.10 1.47 6.44 -51.93 -0.33 1.14 16 4 N -0.74 -13.77 5.09 -53.16 -0.27 -14.04 16 5 C 0.09 2.09 6.65 -83.69 -0.56 1.53 16 6 C -0.17 -3.82 8.76 -39.77 -0.35 -4.17 16 7 C -0.12 -3.22 8.63 -39.26 -0.34 -3.56 16 8 C 0.07 2.01 5.57 -106.80 -0.59 1.41 16 9 C -0.47 -12.70 9.03 -37.88 -0.34 -13.05 16 10 H 0.07 1.91 7.91 -52.48 -0.41 1.49 16 11 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 12 N -0.81 -21.43 10.98 55.54 0.61 -20.82 16 13 Si 0.90 19.24 29.60 -169.99 -5.03 14.21 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 17 C -0.18 -4.63 9.74 -39.27 -0.38 -5.01 16 18 C -0.16 -3.58 9.82 -39.77 -0.39 -3.98 16 19 C 0.51 7.29 7.19 -10.99 -0.08 7.21 16 20 O -0.53 -9.48 15.50 5.55 0.09 -9.40 16 21 N -0.73 -7.45 4.97 -53.81 -0.27 -7.71 16 22 C 0.15 1.38 2.45 -67.93 -0.17 1.21 16 23 C -0.13 -1.25 5.49 -26.73 -0.15 -1.40 16 24 C -0.11 -0.87 5.20 -26.73 -0.14 -1.01 16 25 C -0.09 -0.61 2.72 -90.62 -0.25 -0.86 16 26 C -0.15 -0.84 9.19 37.16 0.34 -0.50 16 27 C -0.11 -0.68 5.20 -26.71 -0.14 -0.82 16 28 C -0.13 -0.85 5.39 -26.71 -0.14 -0.99 16 29 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 30 H 0.06 0.52 7.55 -51.93 -0.39 0.13 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.39 7.34 7.79 -40.82 -0.32 7.02 16 33 H 0.09 1.78 6.06 -52.49 -0.32 1.46 16 34 H 0.12 3.16 6.18 -52.48 -0.32 2.83 16 35 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 36 H 0.09 2.19 8.06 -52.48 -0.42 1.76 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.40 3.07 8.01 -40.82 -0.33 2.74 16 39 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 401.08 15.07 6.04 6.04 Total: -1.00 -30.09 401.08 -11.13 -41.22 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -8.70 Total: 12.36 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -3.60 Total: -21.86 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.07 Total: -42.57 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.09 -11.13 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073644118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.783 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds