Wall clock time and date at job start Tue Mar 31 2020 15:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47170 * 2 1 4 4 N 1.46499 * 109.46839 * 119.99655 * 2 1 3 5 5 C 1.38848 * 120.00670 * 274.99448 * 4 2 1 6 6 C 1.39574 * 119.83795 * 359.73853 * 5 4 2 7 7 C 1.36343 * 120.15810 * 179.71716 * 6 5 4 8 8 C 1.40884 * 119.83794 * 0.54250 * 7 6 5 9 9 C 1.41133 * 120.15643 * 179.70079 * 8 7 6 10 10 H 1.08005 * 120.00079 * 155.11541 * 9 8 7 11 11 C 1.39863 * 120.00324 * 335.11322 * 9 8 7 12 12 N 1.30905 * 119.99848 * 342.13288 * 11 9 8 13 13 Si 1.86803 * 120.00215 * 162.12448 * 11 9 8 14 14 H 1.48498 * 109.46634 * 94.65549 * 13 11 9 15 15 H 1.48492 * 109.47159 * 214.65715 * 13 11 9 16 16 H 1.48499 * 109.47212 * 334.66006 * 13 11 9 17 17 C 1.40887 * 119.68566 * 359.72831 * 8 7 6 18 18 C 1.36334 * 119.84246 * 359.97438 * 17 8 7 19 19 C 1.50696 * 109.47050 * 239.99782 * 2 1 3 20 20 O 1.21283 * 120.00418 * 239.99621 * 19 2 1 21 21 N 1.34781 * 119.99808 * 59.72718 * 19 2 1 22 22 C 1.46501 * 120.00196 * 180.27285 * 21 19 2 23 23 C 1.53003 * 109.47147 * 275.00127 * 22 21 19 24 24 C 1.53001 * 109.47141 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47060 * 59.99626 * 24 23 22 26 26 C 1.53001 * 109.47060 * 180.02562 * 25 24 23 27 27 C 1.53003 * 109.47449 * 300.00185 * 25 24 23 28 28 C 1.52992 * 109.47389 * 154.99927 * 22 21 19 29 29 H 1.09001 * 109.46988 * 300.00300 * 1 2 3 30 30 H 1.09002 * 109.47414 * 59.99675 * 1 2 3 31 31 H 1.08999 * 109.47170 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99339 * 95.00379 * 4 2 1 33 33 H 1.07992 * 119.91952 * 359.96993 * 6 5 4 34 34 H 1.08003 * 120.08130 * 180.27178 * 7 6 5 35 35 H 0.97000 * 119.99977 * 179.97438 * 12 11 9 36 36 H 1.08006 * 120.07682 * 180.02562 * 17 8 7 37 37 H 1.07994 * 119.92543 * 179.97438 * 18 17 8 38 38 H 0.97000 * 119.99970 * 0.27498 * 21 19 2 39 39 H 1.08999 * 109.46533 * 34.99759 * 22 21 19 40 40 H 1.08998 * 109.46967 * 299.99821 * 23 22 21 41 41 H 1.09001 * 109.46856 * 59.99605 * 23 22 21 42 42 H 1.08999 * 109.46740 * 299.99754 * 24 23 22 43 43 H 1.08993 * 109.47122 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.46867 * 60.00040 * 25 24 23 45 45 H 1.08994 * 109.46989 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.47019 * 300.00494 * 26 25 24 47 47 H 1.08998 * 109.47248 * 60.00272 * 26 25 24 48 48 H 1.08998 * 109.46967 * 299.99793 * 27 25 24 49 49 H 1.08994 * 109.47124 * 179.97438 * 27 25 24 50 50 H 1.09003 * 109.47298 * 300.00153 * 28 22 21 51 51 H 1.08998 * 109.47048 * 59.99981 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 2.1510 0.0021 2.3923 6 6 1.8234 1.3576 2.4498 7 6 1.9458 2.0427 3.6223 8 6 2.4150 1.3818 4.7746 9 6 2.5503 2.0860 5.9902 10 1 2.5120 1.5543 6.9295 11 6 2.7340 3.4725 5.9786 12 7 3.1271 4.0714 4.8830 13 14 2.4184 4.4695 7.5264 14 1 3.6938 4.6556 8.2639 15 1 1.8627 5.7958 7.1561 16 1 1.4480 3.7497 8.3897 17 6 2.7491 0.0148 4.7076 18 6 2.6160 -0.6592 3.5300 19 6 2.0323 -0.7104 -1.2304 20 8 2.7296 -1.6965 -1.1192 21 7 1.7021 -0.2532 -2.4545 22 6 2.1854 -0.9473 -3.6507 23 6 3.5869 -0.4434 -4.0014 24 6 4.0920 -1.1688 -5.2503 25 6 3.1436 -0.8930 -6.4188 26 6 3.6483 -1.6189 -7.6675 27 6 1.7421 -1.3968 -6.0681 28 6 1.2370 -0.6709 -4.8190 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2489 -1.6317 1.1526 33 1 1.4683 1.8640 1.5645 34 1 1.6878 3.0905 3.6664 35 1 3.2542 5.0330 4.8748 36 1 3.1091 -0.4982 5.5872 37 1 2.8721 -1.7070 3.4770 38 1 1.1445 0.5355 -2.5435 39 1 2.2224 -2.0195 -3.4585 40 1 3.5500 0.6288 -4.1936 41 1 4.2626 -0.6403 -3.1691 42 1 4.1290 -2.2410 -5.0576 43 1 5.0905 -0.8102 -5.4999 44 1 3.1066 0.1792 -6.6113 45 1 2.9729 -1.4220 -8.5000 46 1 4.6468 -1.2603 -7.9175 47 1 3.6850 -2.6910 -7.4746 48 1 1.7791 -2.4690 -5.8755 49 1 1.0664 -1.1999 -6.9003 50 1 0.2386 -1.0299 -4.5692 51 1 1.2001 0.4013 -5.0111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073644118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:02 Heat of formation + Delta-G solvation = -59.404080 kcal Electronic energy + Delta-G solvation = -27764.160004 eV Core-core repulsion = 24046.845373 eV Total energy + Delta-G solvation = -3717.314631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.36817 -39.88952 -39.21524 -36.82148 -35.73027 -34.99066 -32.72557 -31.73746 -31.49347 -31.28384 -29.66507 -27.03917 -26.40978 -24.74319 -23.71017 -23.18850 -22.40196 -21.79768 -21.18837 -20.48498 -19.15302 -18.72968 -17.73722 -17.15252 -16.75720 -16.44703 -16.25960 -15.68444 -15.47117 -15.21484 -15.15634 -14.96003 -14.68862 -14.32557 -14.24345 -14.06029 -13.79902 -13.67614 -13.44816 -13.25285 -13.23835 -13.18532 -13.09216 -12.72173 -12.57393 -12.53201 -12.46946 -12.25260 -12.07966 -11.89435 -11.63495 -11.58220 -11.26994 -11.16521 -11.11055 -11.07718 -10.79596 -10.35785 -10.07238 -9.40057 -8.54534 -8.19146 -6.00524 1.10686 1.18610 1.41350 1.52070 1.54209 1.60107 2.00648 2.28668 2.84765 2.88537 3.61992 3.71845 3.75686 3.84816 3.96525 4.07695 4.12685 4.18694 4.25591 4.41873 4.46829 4.48876 4.49628 4.55738 4.60030 4.71547 4.80162 4.83642 4.85918 4.98574 5.02033 5.03203 5.12121 5.13062 5.16002 5.20854 5.26262 5.27872 5.29363 5.37681 5.43018 5.45502 5.51460 5.59198 5.68393 5.78882 5.95415 6.18978 6.37688 6.46920 6.67650 6.86139 7.07775 7.09287 7.18191 7.26621 8.49115 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.002007 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.762387 B =13948.038025 C =14219.149684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 H 0.099 0.901 4 N -0.740 5.740 5 C 0.114 3.886 6 C -0.169 4.169 7 C -0.140 4.140 8 C 0.035 3.965 9 C -0.505 4.505 10 H 0.066 0.934 11 C 0.033 3.967 12 N -0.840 5.840 13 Si 0.976 3.024 14 H -0.267 1.267 15 H -0.266 1.266 16 H -0.262 1.262 17 C -0.195 4.195 18 C -0.168 4.168 19 C 0.516 3.484 20 O -0.576 6.576 21 N -0.709 5.709 22 C 0.146 3.854 23 C -0.128 4.128 24 C -0.109 4.109 25 C -0.091 4.091 26 C -0.147 4.147 27 C -0.109 4.109 28 C -0.118 4.118 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.395 0.605 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.283 0.717 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.416 0.584 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 -4.912 -25.166 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.029 3.971 3 H 0.117 0.883 4 N -0.375 5.375 5 C 0.016 3.984 6 C -0.191 4.191 7 C -0.160 4.160 8 C 0.032 3.968 9 C -0.536 4.536 10 H 0.084 0.916 11 C -0.179 4.179 12 N -0.468 5.468 13 Si 0.797 3.203 14 H -0.192 1.192 15 H -0.191 1.191 16 H -0.186 1.186 17 C -0.216 4.216 18 C -0.190 4.190 19 C 0.302 3.698 20 O -0.455 6.455 21 N -0.361 5.361 22 C 0.042 3.958 23 C -0.167 4.167 24 C -0.147 4.147 25 C -0.109 4.109 26 C -0.204 4.204 27 C -0.147 4.147 28 C -0.156 4.156 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.253 0.747 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.102 0.898 50 H 0.096 0.904 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.048 -5.252 -25.302 26.330 hybrid contribution 0.288 0.347 1.111 1.199 sum -4.759 -4.905 -24.192 25.139 Atomic orbital electron populations 1.22195 0.92362 1.02896 1.03864 1.20665 0.96095 0.96988 0.83387 0.88346 1.43726 1.76327 1.11742 1.05731 1.17390 1.03411 0.91492 0.86153 1.20278 1.08094 0.92758 0.97965 1.20875 1.02487 0.99432 0.93192 1.17843 0.92581 0.92112 0.94228 1.19573 1.47354 0.93094 0.93607 0.91570 1.26596 0.91715 0.98947 1.00670 1.69911 1.34646 1.11734 1.30504 0.85296 0.79287 0.77564 0.78108 1.19227 1.19078 1.18596 1.20716 1.08111 0.95691 0.97032 1.20074 1.07364 0.98847 0.92733 1.20915 0.79171 0.83964 0.85718 1.90659 1.39404 1.28232 1.87181 1.45940 1.53311 1.32421 1.04437 1.21033 0.94041 0.96545 0.84228 1.21889 0.96008 1.01041 0.97718 1.21535 0.99238 0.99989 0.93942 1.21165 0.94587 1.00800 0.94388 1.21816 1.01246 1.00246 0.97104 1.21556 0.96216 0.99813 0.97079 1.21784 0.98197 1.02471 0.93137 0.92060 0.88459 0.92444 0.77046 0.86626 0.87881 0.90688 0.88727 0.87343 0.74660 0.91867 0.90768 0.94618 0.92723 0.91587 0.90452 0.91715 0.92678 0.92991 0.92288 0.89820 0.90412 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.31 71.98 0.67 -2.77 16 2 C 0.14 3.88 2.67 44.24 0.12 4.00 16 3 H 0.10 2.77 6.44 -2.39 -0.02 2.76 16 4 N -0.74 -26.71 5.09 -322.10 -1.64 -28.35 16 5 C 0.11 4.99 6.65 38.67 0.26 5.25 16 6 C -0.17 -7.71 8.76 22.15 0.19 -7.52 16 7 C -0.14 -7.44 8.63 22.48 0.19 -7.25 16 8 C 0.04 1.98 5.57 -21.27 -0.12 1.86 16 9 C -0.51 -28.58 9.03 23.37 0.21 -28.36 16 10 H 0.07 3.65 7.91 -2.91 -0.02 3.63 16 11 C 0.03 1.73 5.13 85.22 0.44 2.16 16 12 N -0.84 -45.52 10.98 21.82 0.24 -45.28 16 13 Si 0.98 40.05 29.60 68.60 2.03 42.08 16 14 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 15 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 16 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 17 C -0.20 -10.09 9.74 22.47 0.22 -9.87 16 18 C -0.17 -7.78 9.82 22.15 0.22 -7.57 16 19 C 0.52 13.96 7.19 87.66 0.63 14.59 16 20 O -0.58 -20.36 15.50 -3.04 -0.05 -20.40 16 21 N -0.71 -12.92 4.97 -442.54 -2.20 -15.12 16 22 C 0.15 2.52 2.45 44.99 0.11 2.63 16 23 C -0.13 -2.34 5.49 30.60 0.17 -2.17 16 24 C -0.11 -1.62 5.20 30.59 0.16 -1.46 16 25 C -0.09 -0.97 2.72 -10.79 -0.03 -0.99 16 26 C -0.15 -1.37 9.19 71.98 0.66 -0.71 16 27 C -0.11 -1.04 5.20 30.61 0.16 -0.88 16 28 C -0.12 -1.22 5.39 30.61 0.17 -1.05 16 29 H 0.06 1.60 7.69 -2.39 -0.02 1.58 16 30 H 0.10 1.38 7.55 -2.39 -0.02 1.36 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.39 14.41 7.79 -92.71 -0.72 13.68 16 33 H 0.12 4.52 6.06 -2.91 -0.02 4.50 16 34 H 0.10 5.71 6.18 -2.91 -0.02 5.69 16 35 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 36 H 0.09 4.67 8.06 -2.91 -0.02 4.64 16 37 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.42 4.91 8.01 -92.71 -0.74 4.16 16 39 H 0.06 1.42 7.58 -2.39 -0.02 1.41 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 46 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 50 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -68.00 401.08 2.27 -65.73 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: -0.54 Total: 41.47 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 4.42 Total: -40.12 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -3.60 Total: -88.76 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.40 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -68.00 2.27 -65.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073644118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.328 kcal (2) G-P(sol) polarization free energy of solvation -68.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds