Wall clock time and date at job start Tue Mar 31 2020 15:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34350 * 125.41465 * 2 1 4 4 C 1.46904 * 106.35592 * 179.86382 * 3 2 1 5 5 C 1.46447 * 127.06679 * 180.17312 * 4 3 2 6 6 O 1.21344 * 120.00073 * 180.26353 * 5 4 3 7 7 C 1.50700 * 119.99854 * 0.25886 * 5 4 3 8 8 N 1.46501 * 109.47261 * 179.97438 * 7 5 4 9 9 C 1.36942 * 120.00118 * 270.00478 * 8 7 5 10 10 H 1.07997 * 119.99938 * 139.46186 * 9 8 7 11 11 C 1.38811 * 119.99623 * 319.46467 * 9 8 7 12 12 N 1.31624 * 119.99968 * 160.66617 * 11 9 8 13 13 Si 1.86796 * 120.00307 * 340.66303 * 11 9 8 14 14 H 1.48500 * 109.47166 * 95.32752 * 13 11 9 15 15 H 1.48502 * 109.47337 * 215.32907 * 13 11 9 16 16 H 1.48497 * 109.47290 * 335.32676 * 13 11 9 17 17 C 1.46499 * 120.00071 * 90.00213 * 8 7 5 18 18 C 1.54262 * 110.03412 * 241.50391 * 17 8 7 19 19 C 1.54966 * 104.16197 * 217.13966 * 18 17 8 20 20 C 1.54884 * 102.77625 * 37.88118 * 19 18 17 21 21 C 1.53869 * 110.03381 * 124.28456 * 17 8 7 22 22 C 1.38223 * 105.87042 * 0.39156 * 4 3 2 23 23 C 1.50700 * 125.91784 * 179.75910 * 22 4 3 24 24 N 1.34483 * 108.15857 * 359.76163 * 22 4 3 25 25 C 1.46503 * 124.77583 * 180.02562 * 24 22 4 26 26 C 1.52999 * 117.49863 * 133.25676 * 25 24 22 27 27 C 1.52994 * 117.49950 * 64.59305 * 25 24 22 28 28 H 1.09001 * 109.47176 * 264.57136 * 1 2 3 29 29 H 1.08999 * 109.46918 * 24.57213 * 1 2 3 30 30 H 1.08994 * 109.46898 * 144.57130 * 1 2 3 31 31 H 1.08004 * 126.82783 * 359.95935 * 3 2 1 32 32 H 1.08998 * 109.47704 * 299.99869 * 7 5 4 33 33 H 1.09006 * 109.47121 * 60.00351 * 7 5 4 34 34 H 0.96992 * 120.00089 * 179.97438 * 12 11 9 35 35 H 1.08999 * 110.01316 * 2.89120 * 17 8 7 36 36 H 1.09009 * 110.48289 * 335.78081 * 18 17 8 37 37 H 1.08996 * 110.48951 * 98.42268 * 18 17 8 38 38 H 1.09005 * 110.71327 * 279.56804 * 19 18 17 39 39 H 1.08996 * 110.92615 * 156.29558 * 19 18 17 40 40 H 1.09000 * 110.48333 * 203.40878 * 20 19 18 41 41 H 1.09003 * 110.59496 * 80.82484 * 20 19 18 42 42 H 1.09000 * 110.03263 * 238.56979 * 21 17 8 43 43 H 1.09004 * 110.03584 * 359.95238 * 21 17 8 44 44 H 1.08996 * 109.47778 * 269.99801 * 23 22 4 45 45 H 1.08999 * 109.46867 * 30.00344 * 23 22 4 46 46 H 1.09006 * 109.46948 * 149.99677 * 23 22 4 47 47 H 1.09004 * 115.54621 * 278.91895 * 25 24 22 48 48 H 1.08998 * 117.50189 * 359.97438 * 26 25 24 49 49 H 1.09005 * 117.50011 * 145.02496 * 26 25 24 50 50 H 1.09003 * 117.49559 * 214.98164 * 27 25 24 51 51 H 1.08999 * 117.49954 * 359.97206 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2856 1.0949 0.0000 4 6 3.6741 0.6152 0.0034 5 6 4.8900 1.4315 0.0081 6 8 5.9795 0.8972 0.0057 7 6 4.7881 2.9350 0.0159 8 7 6.1332 3.5156 0.0201 9 6 6.7608 3.7807 1.2080 10 1 7.8147 3.5730 1.3200 11 6 6.0425 4.3163 2.2681 12 7 6.5110 4.2229 3.4946 13 14 4.4108 5.1698 1.9543 14 1 3.3002 4.2057 2.1603 15 1 4.2587 6.3085 2.8952 16 1 4.3762 5.6736 0.5578 17 6 6.8067 3.8127 -1.2465 18 6 8.1040 2.9859 -1.3617 19 6 9.1038 3.9442 -2.0571 20 6 8.7591 5.3159 -1.4258 21 6 7.2228 5.2935 -1.2876 22 6 3.5973 -0.7648 -0.0040 23 6 4.7667 -1.7154 -0.0091 24 7 2.2981 -1.1123 -0.0058 25 6 1.8017 -2.4906 -0.0126 26 6 0.6873 -2.8450 0.9739 27 6 2.1100 -3.3585 1.2090 28 1 -0.3633 -0.0972 1.0231 29 1 -0.3633 0.9346 -0.4273 30 1 -0.3633 -0.8373 -0.5957 31 1 1.9562 2.1235 -0.0006 32 1 4.2513 3.2675 -0.8725 33 1 4.2506 3.2582 0.9075 34 1 6.0093 4.5975 4.2353 35 1 6.1449 3.5874 -2.0827 36 1 8.4680 2.7074 -0.3726 37 1 7.9378 2.0983 -1.9719 38 1 8.9359 3.9614 -3.1340 39 1 10.1327 3.6632 -1.8326 40 1 9.0712 6.1275 -2.0830 41 1 9.2287 5.4165 -0.4472 42 1 6.7637 5.7867 -2.1444 43 1 6.9229 5.7914 -0.3655 44 1 5.0487 -1.9392 -1.0379 45 1 5.6100 -1.2566 0.5072 46 1 4.4873 -2.6379 0.5000 47 1 1.7860 -2.9798 -0.9866 48 1 0.3236 -2.0528 1.6283 49 1 -0.0613 -3.5678 0.6492 50 1 2.2969 -4.4188 1.0388 51 1 2.6826 -2.9042 2.0176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085947768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:51 Heat of formation + Delta-G solvation = 56.453496 kcal Electronic energy + Delta-G solvation = -29478.183482 eV Core-core repulsion = 25765.892813 eV Total energy + Delta-G solvation = -3712.290670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34633 -38.41609 -37.34001 -36.71902 -34.02564 -32.55394 -31.36848 -30.72045 -29.14042 -27.83143 -27.75162 -26.32840 -24.58053 -23.34337 -22.91658 -22.28321 -21.06678 -19.92046 -19.08175 -18.78921 -17.99909 -16.83300 -16.22081 -15.88653 -15.36325 -15.29997 -14.67982 -14.41900 -14.09495 -13.96791 -13.85879 -13.48509 -13.25022 -13.19235 -13.10925 -12.67956 -12.54213 -12.33400 -12.21944 -12.14660 -11.98764 -11.87320 -11.81406 -11.23685 -11.11691 -10.98495 -10.87611 -10.85096 -10.64650 -10.35663 -10.30085 -10.19945 -9.94752 -9.81684 -9.61244 -9.35384 -8.73462 -8.36422 -8.35012 -7.70715 -6.59533 -5.86566 -3.30709 1.99187 2.53688 2.74556 3.14099 3.34944 3.50877 3.55753 3.96022 4.23833 4.32879 4.46489 4.59980 4.78079 4.92402 5.00713 5.14424 5.22570 5.26465 5.29812 5.38968 5.44461 5.46701 5.51987 5.52888 5.60156 5.63743 5.76250 5.76577 5.79406 5.87368 6.11468 6.15395 6.16727 6.23091 6.31156 6.33837 6.37993 6.43509 6.53251 6.59747 6.65626 6.71502 6.77356 6.92446 7.10051 7.10293 7.29964 7.35061 7.37131 7.44441 8.18649 8.58284 8.72349 9.14354 9.83454 10.25263 11.29171 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.003840 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.537898 B = 7290.504116 C = 8145.057673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.000 4.000 3 C -0.153 4.153 4 C -0.250 4.250 5 C 0.397 3.603 6 O -0.449 6.449 7 C 0.100 3.900 8 N -0.585 5.585 9 C -0.244 4.244 10 H 0.080 0.920 11 C 0.033 3.967 12 N -0.903 5.903 13 Si 0.866 3.134 14 H -0.284 1.284 15 H -0.301 1.301 16 H -0.264 1.264 17 C 0.178 3.822 18 C -0.126 4.126 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.133 4.133 22 C 0.097 3.903 23 C -0.090 4.090 24 N -0.416 5.416 25 C 0.047 3.953 26 C -0.168 4.168 27 C -0.172 4.172 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.144 0.856 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.261 0.739 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.060 0.940 47 H 0.129 0.871 48 H 0.105 0.895 49 H 0.109 0.891 50 H 0.110 0.890 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.639 -12.164 -9.421 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C -0.177 4.177 4 C -0.258 4.258 5 C 0.271 3.729 6 O -0.323 6.323 7 C -0.027 4.027 8 N -0.304 5.304 9 C -0.373 4.373 10 H 0.097 0.903 11 C -0.166 4.166 12 N -0.545 5.545 13 Si 0.696 3.304 14 H -0.212 1.212 15 H -0.230 1.230 16 H -0.189 1.189 17 C 0.071 3.929 18 C -0.166 4.166 19 C -0.162 4.162 20 C -0.154 4.154 21 C -0.172 4.172 22 C -0.018 4.018 23 C -0.147 4.147 24 N -0.093 5.093 25 C -0.056 4.056 26 C -0.206 4.206 27 C -0.210 4.210 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.079 0.921 47 H 0.146 0.854 48 H 0.124 0.876 49 H 0.128 0.872 50 H 0.128 0.872 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.215 -12.669 -9.246 19.281 hybrid contribution -1.227 0.470 0.075 1.317 sum -12.442 -12.199 -9.170 19.691 Atomic orbital electron populations 1.20306 0.88340 1.02951 1.01971 1.20054 0.93273 0.85293 1.12060 1.21868 0.91356 0.97362 1.07076 1.21630 0.95353 0.91944 1.16887 1.22956 0.86087 0.92650 0.71171 1.90397 1.29994 1.75491 1.36459 1.21564 0.89786 0.90291 1.01044 1.43974 1.14530 1.69369 1.02569 1.18623 0.96016 1.35342 0.87355 0.90292 1.25525 0.97615 0.98055 0.95437 1.69848 1.39770 1.46630 0.98230 0.87045 0.85130 0.79893 0.78294 1.21244 1.22957 1.18897 1.21015 0.92659 0.92068 0.87160 1.22743 0.96054 0.96795 1.00980 1.22461 0.98751 0.96408 0.98593 1.22230 0.96941 0.96037 1.00168 1.22530 0.94772 0.98533 1.01338 1.20839 0.84069 0.94405 1.02509 1.20524 0.94885 0.96427 1.02874 1.42884 1.05059 1.04137 1.57261 1.21904 1.04630 0.82724 0.96368 1.23372 0.92200 1.03638 1.01347 1.23401 0.98805 0.99951 0.98800 0.91621 0.90399 0.91964 0.83877 0.91430 0.90190 0.92931 0.93429 0.90156 0.93417 0.92895 0.92810 0.93422 0.91590 0.93860 0.90118 0.91002 0.88176 0.92110 0.85393 0.87616 0.87226 0.87185 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 8.79 36.01 0.32 -0.44 16 2 C 0.00 -0.01 6.71 -81.89 -0.55 -0.56 16 3 C -0.15 -2.53 10.58 -37.45 -0.40 -2.93 16 4 C -0.25 -4.75 6.29 -103.09 -0.65 -5.40 16 5 C 0.40 8.75 7.19 -31.00 -0.22 8.53 16 6 O -0.45 -10.82 14.96 5.50 0.08 -10.74 16 7 C 0.10 2.26 4.50 -5.19 -0.02 2.24 16 8 N -0.58 -14.21 1.48 -165.76 -0.25 -14.45 16 9 C -0.24 -6.88 8.27 -15.06 -0.12 -7.00 16 10 H 0.08 2.45 7.01 -52.49 -0.37 2.09 16 11 C 0.03 0.97 5.34 -17.43 -0.09 0.87 16 12 N -0.90 -28.04 13.97 55.49 0.78 -27.27 16 13 Si 0.87 22.01 24.97 -169.99 -4.25 17.76 16 14 H -0.28 -7.02 6.72 56.52 0.38 -6.64 16 15 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 16 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 17 C 0.18 3.75 3.42 -66.82 -0.23 3.52 16 18 C -0.13 -2.56 6.43 -25.03 -0.16 -2.72 16 19 C -0.12 -2.11 6.91 -24.70 -0.17 -2.28 16 20 C -0.12 -2.06 6.83 -25.08 -0.17 -2.24 16 21 C -0.13 -2.63 6.25 -25.62 -0.16 -2.79 16 22 C 0.10 1.58 6.90 -81.44 -0.56 1.02 16 23 C -0.09 -1.30 9.54 36.01 0.34 -0.96 16 24 N -0.42 -5.64 2.98 -100.61 -0.30 -5.94 16 25 C 0.05 0.44 5.72 -67.93 -0.39 0.05 16 26 C -0.17 -1.23 9.12 -26.69 -0.24 -1.47 16 27 C -0.17 -1.38 9.17 -26.69 -0.24 -1.63 16 28 H 0.07 0.58 7.52 -51.93 -0.39 0.19 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.51 7.60 -51.93 -0.39 0.11 16 31 H 0.14 2.21 8.06 -52.48 -0.42 1.78 16 32 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 33 H 0.08 1.94 3.43 -51.93 -0.18 1.76 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.05 0.94 7.81 -51.93 -0.41 0.53 16 36 H 0.08 1.89 6.56 -51.92 -0.34 1.55 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.83 7.21 -51.93 -0.37 1.46 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.10 1.72 6.52 -51.93 -0.34 1.39 16 46 H 0.06 0.71 6.64 -51.93 -0.34 0.37 16 47 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.11 0.87 6.94 -51.93 -0.36 0.51 16 49 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -33.48 396.46 -10.24 -43.72 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.56 Total: 5.10 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -3.73 Total: -14.16 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.23 Total: -47.66 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.25 Total: 17.76 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.48 -10.24 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085947768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.175 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds