Wall clock time and date at job start Tue Mar 31 2020 15:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34350 * 125.41465 * 2 1 4 4 C 1.46904 * 106.35592 * 179.86382 * 3 2 1 5 5 C 1.46447 * 127.06679 * 180.17312 * 4 3 2 6 6 O 1.21344 * 120.00073 * 180.26353 * 5 4 3 7 7 C 1.50700 * 119.99854 * 0.25886 * 5 4 3 8 8 N 1.46501 * 109.47261 * 179.97438 * 7 5 4 9 9 C 1.36942 * 120.00118 * 270.00478 * 8 7 5 10 10 H 1.07997 * 119.99938 * 139.46186 * 9 8 7 11 11 C 1.38811 * 119.99623 * 319.46467 * 9 8 7 12 12 N 1.31624 * 119.99968 * 160.66617 * 11 9 8 13 13 Si 1.86796 * 120.00307 * 340.66303 * 11 9 8 14 14 H 1.48500 * 109.47166 * 95.32752 * 13 11 9 15 15 H 1.48502 * 109.47337 * 215.32907 * 13 11 9 16 16 H 1.48497 * 109.47290 * 335.32676 * 13 11 9 17 17 C 1.46499 * 120.00071 * 90.00213 * 8 7 5 18 18 C 1.54262 * 110.03412 * 241.50391 * 17 8 7 19 19 C 1.54966 * 104.16197 * 217.13966 * 18 17 8 20 20 C 1.54884 * 102.77625 * 37.88118 * 19 18 17 21 21 C 1.53869 * 110.03381 * 124.28456 * 17 8 7 22 22 C 1.38223 * 105.87042 * 0.39156 * 4 3 2 23 23 C 1.50700 * 125.91784 * 179.75910 * 22 4 3 24 24 N 1.34483 * 108.15857 * 359.76163 * 22 4 3 25 25 C 1.46503 * 124.77583 * 180.02562 * 24 22 4 26 26 C 1.52999 * 117.49863 * 133.25676 * 25 24 22 27 27 C 1.52994 * 117.49950 * 64.59305 * 25 24 22 28 28 H 1.09001 * 109.47176 * 264.57136 * 1 2 3 29 29 H 1.08999 * 109.46918 * 24.57213 * 1 2 3 30 30 H 1.08994 * 109.46898 * 144.57130 * 1 2 3 31 31 H 1.08004 * 126.82783 * 359.95935 * 3 2 1 32 32 H 1.08998 * 109.47704 * 299.99869 * 7 5 4 33 33 H 1.09006 * 109.47121 * 60.00351 * 7 5 4 34 34 H 0.96992 * 120.00089 * 179.97438 * 12 11 9 35 35 H 1.08999 * 110.01316 * 2.89120 * 17 8 7 36 36 H 1.09009 * 110.48289 * 335.78081 * 18 17 8 37 37 H 1.08996 * 110.48951 * 98.42268 * 18 17 8 38 38 H 1.09005 * 110.71327 * 279.56804 * 19 18 17 39 39 H 1.08996 * 110.92615 * 156.29558 * 19 18 17 40 40 H 1.09000 * 110.48333 * 203.40878 * 20 19 18 41 41 H 1.09003 * 110.59496 * 80.82484 * 20 19 18 42 42 H 1.09000 * 110.03263 * 238.56979 * 21 17 8 43 43 H 1.09004 * 110.03584 * 359.95238 * 21 17 8 44 44 H 1.08996 * 109.47778 * 269.99801 * 23 22 4 45 45 H 1.08999 * 109.46867 * 30.00344 * 23 22 4 46 46 H 1.09006 * 109.46948 * 149.99677 * 23 22 4 47 47 H 1.09004 * 115.54621 * 278.91895 * 25 24 22 48 48 H 1.08998 * 117.50189 * 359.97438 * 26 25 24 49 49 H 1.09005 * 117.50011 * 145.02496 * 26 25 24 50 50 H 1.09003 * 117.49559 * 214.98164 * 27 25 24 51 51 H 1.08999 * 117.49954 * 359.97206 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2856 1.0949 0.0000 4 6 3.6741 0.6152 0.0034 5 6 4.8900 1.4315 0.0081 6 8 5.9795 0.8972 0.0057 7 6 4.7881 2.9350 0.0159 8 7 6.1332 3.5156 0.0201 9 6 6.7608 3.7807 1.2080 10 1 7.8147 3.5730 1.3200 11 6 6.0425 4.3163 2.2681 12 7 6.5110 4.2229 3.4946 13 14 4.4108 5.1698 1.9543 14 1 3.3002 4.2057 2.1603 15 1 4.2587 6.3085 2.8952 16 1 4.3762 5.6736 0.5578 17 6 6.8067 3.8127 -1.2465 18 6 8.1040 2.9859 -1.3617 19 6 9.1038 3.9442 -2.0571 20 6 8.7591 5.3159 -1.4258 21 6 7.2228 5.2935 -1.2876 22 6 3.5973 -0.7648 -0.0040 23 6 4.7667 -1.7154 -0.0091 24 7 2.2981 -1.1123 -0.0058 25 6 1.8017 -2.4906 -0.0126 26 6 0.6873 -2.8450 0.9739 27 6 2.1100 -3.3585 1.2090 28 1 -0.3633 -0.0972 1.0231 29 1 -0.3633 0.9346 -0.4273 30 1 -0.3633 -0.8373 -0.5957 31 1 1.9562 2.1235 -0.0006 32 1 4.2513 3.2675 -0.8725 33 1 4.2506 3.2582 0.9075 34 1 6.0093 4.5975 4.2353 35 1 6.1449 3.5874 -2.0827 36 1 8.4680 2.7074 -0.3726 37 1 7.9378 2.0983 -1.9719 38 1 8.9359 3.9614 -3.1340 39 1 10.1327 3.6632 -1.8326 40 1 9.0712 6.1275 -2.0830 41 1 9.2287 5.4165 -0.4472 42 1 6.7637 5.7867 -2.1444 43 1 6.9229 5.7914 -0.3655 44 1 5.0487 -1.9392 -1.0379 45 1 5.6100 -1.2566 0.5072 46 1 4.4873 -2.6379 0.5000 47 1 1.7860 -2.9798 -0.9866 48 1 0.3236 -2.0528 1.6283 49 1 -0.0613 -3.5678 0.6492 50 1 2.2969 -4.4188 1.0388 51 1 2.6826 -2.9042 2.0176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085947768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:50 Heat of formation + Delta-G solvation = 38.525036 kcal Electronic energy + Delta-G solvation = -29478.960919 eV Core-core repulsion = 25765.892813 eV Total energy + Delta-G solvation = -3713.068106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.46322 -40.10444 -38.87994 -37.62265 -35.89293 -33.67000 -33.46763 -31.98035 -30.21723 -29.36151 -29.33522 -28.21176 -25.92792 -24.72446 -23.70852 -23.52943 -22.33023 -21.45074 -20.60645 -20.30490 -19.29287 -18.35562 -17.65961 -17.26285 -17.08417 -16.76203 -16.04668 -15.84543 -15.60587 -15.44049 -14.99904 -14.91789 -14.87721 -14.41906 -14.19148 -14.12839 -14.00072 -13.79546 -13.77529 -13.46235 -13.05662 -13.01104 -12.92016 -12.84459 -12.49158 -12.47589 -12.25957 -12.11505 -11.92791 -11.78636 -11.73511 -11.62559 -11.61705 -11.53869 -11.24176 -11.22023 -10.65666 -10.36562 -9.55113 -8.92173 -8.60091 -8.13016 -5.55129 0.55666 1.29379 1.35985 1.40731 1.52983 1.76109 2.40894 2.45035 2.49741 3.01452 3.33312 3.52099 3.62658 3.72459 3.76244 3.92338 3.96215 4.01498 4.04973 4.18983 4.25964 4.45359 4.50130 4.55919 4.60330 4.61651 4.63972 4.66305 4.74158 4.75979 4.79033 4.81819 4.90294 4.91177 4.93797 4.95420 4.98530 5.01615 5.06294 5.13632 5.19319 5.22656 5.30322 5.38281 5.57680 5.61925 5.68043 5.84978 6.02317 6.14670 6.29564 6.39507 6.95996 7.14431 7.68830 8.11071 9.07118 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.003840 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.537898 B = 7290.504116 C = 8145.057673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.016 3.984 3 C -0.183 4.183 4 C -0.296 4.296 5 C 0.393 3.607 6 O -0.488 6.488 7 C 0.095 3.905 8 N -0.594 5.594 9 C -0.223 4.223 10 H 0.030 0.970 11 C -0.027 4.027 12 N -0.957 5.957 13 Si 0.935 3.065 14 H -0.273 1.273 15 H -0.308 1.308 16 H -0.245 1.245 17 C 0.167 3.833 18 C -0.123 4.123 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.130 4.130 22 C 0.097 3.903 23 C -0.084 4.084 24 N -0.408 5.408 25 C 0.023 3.977 26 C -0.148 4.148 27 C -0.174 4.174 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.260 0.740 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.151 0.849 48 H 0.097 0.903 49 H 0.143 0.857 50 H 0.137 0.863 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.129 -13.511 -12.285 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.206 4.206 4 C -0.304 4.304 5 C 0.271 3.729 6 O -0.366 6.366 7 C -0.031 4.031 8 N -0.315 5.315 9 C -0.354 4.354 10 H 0.048 0.952 11 C -0.222 4.222 12 N -0.602 5.602 13 Si 0.763 3.237 14 H -0.200 1.200 15 H -0.237 1.237 16 H -0.168 1.168 17 C 0.062 3.938 18 C -0.163 4.163 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.169 4.169 22 C -0.021 4.021 23 C -0.141 4.141 24 N -0.084 5.084 25 C -0.079 4.079 26 C -0.185 4.185 27 C -0.211 4.211 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.165 0.835 32 H 0.116 0.884 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.107 0.893 47 H 0.168 0.832 48 H 0.115 0.885 49 H 0.161 0.839 50 H 0.155 0.845 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.744 -14.032 -12.156 23.707 hybrid contribution -0.138 0.706 0.948 1.190 sum -14.882 -13.326 -11.208 22.906 Atomic orbital electron populations 1.20461 0.84886 1.04632 1.03370 1.20680 0.95192 0.84513 1.08813 1.22024 0.90565 0.98700 1.09270 1.21445 0.95149 0.93269 1.20561 1.22998 0.86898 0.92739 0.70241 1.90381 1.31464 1.75897 1.38818 1.21656 0.88757 0.91117 1.01599 1.44045 1.15115 1.69925 1.02366 1.18310 0.94191 1.33849 0.89026 0.95219 1.26144 1.01986 0.99138 0.94898 1.70004 1.42118 1.48773 0.99285 0.85939 0.80709 0.78301 0.78787 1.20025 1.23663 1.16800 1.21299 0.93031 0.93260 0.86230 1.22618 0.96928 0.97820 0.98903 1.22419 0.98135 0.94432 0.99928 1.22206 0.95393 0.97826 0.99659 1.22488 0.96378 0.97134 1.00929 1.20968 0.85863 0.93844 1.01424 1.20454 0.93276 0.96912 1.03449 1.43163 1.03956 1.06128 1.55187 1.22381 1.06687 0.80630 0.98162 1.23510 0.92150 1.03455 0.99363 1.23470 0.99492 1.00986 0.97144 0.90314 0.89293 0.89650 0.83456 0.88354 0.91782 0.93153 0.91238 0.94902 0.93124 0.89597 0.91943 0.89898 0.94406 0.90580 0.93585 0.89851 0.91638 0.89274 0.83173 0.88501 0.83892 0.84513 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 8.79 71.24 0.63 -0.55 16 2 C 0.02 0.39 6.71 40.95 0.27 0.67 16 3 C -0.18 -5.91 10.58 23.65 0.25 -5.66 16 4 C -0.30 -11.46 6.29 -18.87 -0.12 -11.58 16 5 C 0.39 18.09 7.19 27.83 0.20 18.29 16 6 O -0.49 -25.08 14.96 -3.23 -0.05 -25.12 16 7 C 0.10 4.37 4.50 85.63 0.39 4.76 16 8 N -0.59 -29.90 1.48 -678.33 -1.00 -30.90 16 9 C -0.22 -13.42 8.27 84.03 0.69 -12.72 16 10 H 0.03 2.05 7.01 -2.91 -0.02 2.03 16 11 C -0.03 -1.64 5.34 84.86 0.45 -1.19 16 12 N -0.96 -63.11 13.97 21.65 0.30 -62.80 16 13 Si 0.93 47.21 24.97 68.60 1.71 48.92 16 14 H -0.27 -13.15 6.72 99.48 0.67 -12.48 16 15 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 16 H -0.24 -11.42 7.11 99.48 0.71 -10.71 16 17 C 0.17 7.10 3.42 45.71 0.16 7.26 16 18 C -0.12 -5.14 6.43 31.69 0.20 -4.94 16 19 C -0.11 -3.65 6.91 31.91 0.22 -3.43 16 20 C -0.11 -3.93 6.83 31.67 0.22 -3.72 16 21 C -0.13 -5.07 6.25 31.31 0.20 -4.87 16 22 C 0.10 3.14 6.90 42.15 0.29 3.43 16 23 C -0.08 -2.44 9.54 71.24 0.68 -1.77 16 24 N -0.41 -10.23 2.98 -472.21 -1.41 -11.64 16 25 C 0.02 0.35 5.72 44.99 0.26 0.61 16 26 C -0.15 -1.51 9.12 30.62 0.28 -1.23 16 27 C -0.17 -2.25 9.17 30.62 0.28 -1.96 16 28 H 0.08 1.07 7.52 -2.39 -0.02 1.05 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 0.96 7.60 -2.39 -0.02 0.94 16 31 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.10 3.84 7.91 -2.39 -0.02 3.82 16 33 H 0.06 3.16 3.43 -2.38 -0.01 3.15 16 34 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 35 H 0.07 2.64 7.81 -2.39 -0.02 2.62 16 36 H 0.03 1.66 6.56 -2.38 -0.02 1.64 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.05 2.11 7.21 -2.38 -0.02 2.09 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 2.40 6.52 -2.39 -0.02 2.39 16 46 H 0.09 2.01 6.64 -2.38 -0.02 1.99 16 47 H 0.15 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.10 1.22 6.94 -2.39 -0.02 1.21 16 49 H 0.14 0.57 8.14 -2.38 -0.02 0.55 16 50 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -81.03 396.46 5.98 -75.05 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.87 Total: 25.09 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 5.55 Total: -18.60 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -2.11 Total: -105.34 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.71 Total: 48.92 kcal Total: -81.03 5.98 -75.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085947768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.577 kcal (2) G-P(sol) polarization free energy of solvation -81.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds