Wall clock time and date at job start Tue Mar 31 2020 15:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.53877 * 2 1 4 4 C 1.53124 * 109.50482 * 120.10128 * 2 1 3 5 5 C 1.53118 * 109.16228 * 177.59351 * 4 2 1 6 6 C 1.53033 * 109.27602 * 302.34510 * 5 4 2 7 7 N 1.46844 * 109.52733 * 59.18157 * 6 5 4 8 8 C 1.46896 * 111.00401 * 174.15769 * 7 6 5 9 9 C 1.50707 * 109.47043 * 66.04715 * 8 7 6 10 10 O 1.21292 * 119.99574 * 353.97194 * 9 8 7 11 11 N 1.34777 * 120.00063 * 173.98154 * 9 8 7 12 12 C 1.46498 * 119.99623 * 185.15464 * 11 9 8 13 13 C 1.50702 * 109.47183 * 90.00087 * 12 11 9 14 14 H 1.08007 * 120.00075 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00483 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00281 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99479 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47392 * 90.00397 * 17 15 13 19 19 H 1.48502 * 109.46980 * 210.00175 * 17 15 13 20 20 H 1.48500 * 109.47521 * 330.00090 * 17 15 13 21 21 C 1.39924 * 119.99873 * 5.15378 * 11 9 8 22 22 C 1.38869 * 120.06965 * 290.78254 * 21 11 9 23 23 C 1.38115 * 119.93086 * 179.76626 * 22 21 11 24 24 C 1.38284 * 120.06589 * 0.49326 * 23 22 21 25 25 C 1.38288 * 120.14343 * 359.76022 * 24 23 22 26 26 C 1.38110 * 120.06894 * 0.02562 * 25 24 23 27 27 C 1.46847 * 111.19646 * 298.25574 * 7 6 5 28 28 H 1.09001 * 109.47081 * 299.90333 * 1 2 3 29 29 H 1.09002 * 109.46968 * 59.89855 * 1 2 3 30 30 H 1.09000 * 109.47463 * 179.90415 * 1 2 3 31 31 H 1.08997 * 109.47050 * 180.09916 * 3 2 1 32 32 H 1.09000 * 109.47197 * 300.10264 * 3 2 1 33 33 H 1.09007 * 109.47004 * 60.09777 * 3 2 1 34 34 H 1.08999 * 109.52176 * 57.68690 * 4 2 1 35 35 H 1.09000 * 109.51965 * 297.49744 * 4 2 1 36 36 H 1.08998 * 109.50393 * 182.40167 * 5 4 2 37 37 H 1.09005 * 109.53143 * 62.30356 * 5 4 2 38 38 H 1.09001 * 109.46565 * 299.15975 * 6 5 4 39 39 H 1.08999 * 109.45275 * 179.18749 * 6 5 4 40 40 H 1.09003 * 109.47259 * 186.04326 * 8 7 6 41 41 H 1.08998 * 109.47444 * 306.04804 * 8 7 6 42 42 H 1.09001 * 109.46763 * 209.99393 * 12 11 9 43 43 H 1.08994 * 109.47735 * 329.99930 * 12 11 9 44 44 H 0.96998 * 119.99971 * 179.97438 * 16 15 13 45 45 H 1.08002 * 120.03886 * 359.97438 * 22 21 11 46 46 H 1.08000 * 119.96684 * 180.25309 * 23 22 21 47 47 H 1.08004 * 119.92923 * 179.74501 * 24 23 22 48 48 H 1.07994 * 119.96360 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.03818 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.46804 * 181.75743 * 27 7 6 51 51 H 1.08995 * 109.46538 * 301.72866 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0412 -0.7239 1.2487 5 6 3.5712 -0.7721 1.2107 6 6 4.0228 -1.4731 -0.0725 7 7 3.5092 -0.7422 -1.2379 8 6 4.0372 -1.3059 -2.4875 9 6 3.5009 -2.7018 -2.6749 10 8 2.8421 -3.2210 -1.7988 11 7 3.7535 -3.3732 -3.8159 12 6 3.1398 -4.6834 -4.0459 13 6 1.8156 -4.5025 -4.7422 14 1 1.4659 -3.5107 -4.9884 15 6 1.0504 -5.6030 -5.0651 16 7 -0.1055 -5.4451 -5.6723 17 14 1.6555 -7.3184 -4.6399 18 1 1.1745 -7.6915 -3.2854 19 1 1.1327 -8.2885 -5.6354 20 1 3.1402 -7.3391 -4.6611 21 6 4.6019 -2.8188 -4.7806 22 6 4.2000 -1.7020 -5.5015 23 6 5.0417 -1.1543 -6.4497 24 6 6.2794 -1.7230 -6.6887 25 6 6.6804 -2.8383 -5.9762 26 6 5.8451 -3.3881 -5.0236 27 6 2.0409 -0.7235 -1.2481 28 1 -0.3633 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3634 -1.0276 -0.0017 31 1 3.1317 1.4406 -0.0018 32 1 1.6775 1.9567 -0.8891 33 1 1.6804 1.9557 0.8909 34 1 1.6452 -1.7392 1.2689 35 1 1.7157 -0.1871 2.1398 36 1 3.9395 -1.3236 2.0757 37 1 3.9684 0.2429 1.2301 38 1 3.6374 -2.4926 -0.0844 39 1 5.1120 -1.4961 -0.1094 40 1 3.7282 -0.6823 -3.3265 41 1 5.1257 -1.3382 -2.4402 42 1 3.7982 -5.2886 -4.6691 43 1 2.9825 -5.1838 -3.0905 44 1 -0.6436 -6.2194 -5.8997 45 1 3.2317 -1.2602 -5.3186 46 1 4.7314 -0.2833 -7.0078 47 1 6.9341 -1.2953 -7.4336 48 1 7.6474 -3.2802 -6.1655 49 1 6.1587 -4.2593 -4.4678 50 1 1.6904 -0.2023 -2.1390 51 1 1.6647 -1.7464 -1.2544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112703170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:17 Heat of formation + Delta-G solvation = -2.782653 kcal Electronic energy + Delta-G solvation = -29946.123552 eV Core-core repulsion = 26231.264210 eV Total energy + Delta-G solvation = -3714.859342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.49274 -39.25890 -37.96710 -35.22843 -34.30384 -32.66901 -31.97583 -30.77540 -29.71698 -28.51263 -27.10648 -26.75435 -26.31203 -23.46668 -22.58442 -22.30900 -21.95346 -21.13682 -19.10693 -18.35234 -17.09920 -16.98630 -16.22690 -15.90574 -15.35315 -15.12748 -14.87804 -14.61803 -14.42127 -14.19221 -14.05898 -13.72549 -13.65699 -13.21902 -13.08143 -12.88277 -12.54056 -12.40241 -12.20331 -12.10929 -11.88002 -11.79387 -11.65402 -11.38923 -11.35040 -11.17919 -11.00593 -10.87633 -10.64125 -10.58085 -10.35944 -10.24198 -10.06402 -9.99489 -9.94477 -9.60864 -8.78175 -8.73843 -8.63507 -7.83750 -7.70155 -6.14508 -4.13797 1.48956 1.58236 3.09870 3.24261 3.30054 3.31754 3.64632 3.96159 4.10457 4.33939 4.80314 4.89155 4.94048 5.05955 5.10995 5.13274 5.19671 5.24724 5.29637 5.45368 5.51729 5.57414 5.61199 5.66921 5.71422 5.75834 5.78826 5.80134 5.94757 5.97335 6.00191 6.04030 6.06158 6.17297 6.19455 6.20883 6.32017 6.38496 6.48904 6.49557 6.52600 6.62006 6.67214 6.67664 6.72208 6.86027 7.01696 7.18138 7.28250 7.29103 7.52264 8.13285 8.38681 8.75955 8.87832 9.44806 10.98621 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009210 B = 0.004822 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.344046 B = 5805.562006 C = 7598.336295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.132 4.132 4 C -0.109 4.109 5 C -0.113 4.113 6 C 0.038 3.962 7 N -0.510 5.510 8 C 0.035 3.965 9 C 0.487 3.513 10 O -0.527 6.527 11 N -0.556 5.556 12 C 0.217 3.783 13 C -0.528 4.528 14 H 0.075 0.925 15 C 0.075 3.925 16 N -0.894 5.894 17 Si 0.874 3.126 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.266 1.266 21 C 0.159 3.841 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.131 4.131 25 C -0.111 4.111 26 C -0.127 4.127 27 C 0.046 3.954 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.030 0.970 43 H 0.040 0.960 44 H 0.265 0.735 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.122 0.878 50 H 0.065 0.935 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.481 11.835 6.611 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 C -0.189 4.189 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.090 4.090 7 N -0.232 5.232 8 C -0.097 4.097 9 C 0.274 3.726 10 O -0.404 6.404 11 N -0.284 5.284 12 C 0.097 3.903 13 C -0.567 4.567 14 H 0.093 0.907 15 C -0.127 4.127 16 N -0.533 5.533 17 Si 0.701 3.299 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.191 1.191 21 C 0.067 3.933 22 C -0.137 4.137 23 C -0.127 4.127 24 C -0.149 4.149 25 C -0.129 4.129 26 C -0.146 4.146 27 C -0.081 4.081 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.083 0.917 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.095 11.912 7.086 17.754 hybrid contribution -0.222 -1.920 -0.244 1.948 sum 10.873 9.992 6.842 16.276 Atomic orbital electron populations 1.21832 0.94688 1.02006 1.01371 1.20528 0.94766 0.95742 0.94892 1.21796 1.02123 0.94628 1.00335 1.21620 0.95617 1.00460 0.96932 1.21567 0.95924 1.00938 0.96614 1.22297 0.98880 0.97969 0.89853 1.62410 1.09106 1.50867 1.00865 1.22369 1.01097 0.91544 0.94695 1.21861 0.80540 0.88509 0.81642 1.90582 1.39525 1.69238 1.41065 1.45772 1.44955 1.21538 1.16102 1.19778 0.94002 0.79121 0.97393 1.21227 1.01760 0.95530 1.38158 0.90738 1.24810 0.94575 0.98904 0.94456 1.69884 1.11905 1.30649 1.40820 0.86884 0.79583 0.84677 0.78785 1.19873 1.20911 1.19109 1.17698 0.89628 0.94030 0.91897 1.21390 0.99539 0.97099 0.95650 1.21006 0.94090 0.99950 0.97620 1.21085 0.96811 0.96814 1.00220 1.20950 0.99416 0.96387 0.96163 1.21269 0.93162 1.00751 0.99440 1.22421 0.86925 1.01637 0.97130 0.92855 0.92662 0.92495 0.91351 0.93297 0.93884 0.91975 0.92398 0.92117 0.91452 0.91501 0.91874 0.87988 0.88444 0.95184 0.94199 0.92486 0.85716 0.85938 0.86281 0.86092 0.86045 0.91660 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.48 37.16 0.32 -1.46 16 2 C -0.06 -0.77 0.77 -154.42 -0.12 -0.89 16 3 C -0.13 -1.52 8.04 37.16 0.30 -1.23 16 4 C -0.11 -1.37 4.79 -26.61 -0.13 -1.50 16 5 C -0.11 -1.36 5.74 -26.65 -0.15 -1.52 16 6 C 0.04 0.54 5.09 -3.84 -0.02 0.52 16 7 N -0.51 -7.55 4.14 -236.12 -0.98 -8.53 16 8 C 0.03 0.53 4.60 -4.97 -0.02 0.51 16 9 C 0.49 9.57 6.98 -10.98 -0.08 9.50 16 10 O -0.53 -11.96 11.21 5.55 0.06 -11.89 16 11 N -0.56 -11.41 2.50 -114.74 -0.29 -11.70 16 12 C 0.22 5.28 4.22 -5.19 -0.02 5.26 16 13 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 14 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -27.40 13.96 55.43 0.77 -26.63 16 17 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 21 C 0.16 2.77 4.53 -83.69 -0.38 2.39 16 22 C -0.12 -1.85 8.27 -39.39 -0.33 -2.17 16 23 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 24 C -0.13 -1.54 10.04 -39.55 -0.40 -1.94 16 25 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 26 C -0.13 -1.91 9.73 -39.39 -0.38 -2.30 16 27 C 0.05 0.73 3.69 -3.83 -0.01 0.72 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.82 6.01 -51.93 -0.31 0.51 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.77 6.59 -51.93 -0.34 0.42 16 38 H 0.07 1.16 5.80 -51.93 -0.30 0.86 16 39 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 40 H 0.10 1.49 6.33 -51.93 -0.33 1.16 16 41 H 0.10 1.34 8.06 -51.93 -0.42 0.92 16 42 H 0.03 0.72 6.95 -51.93 -0.36 0.36 16 43 H 0.04 1.03 6.79 -51.93 -0.35 0.68 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.12 2.03 7.62 -52.49 -0.40 1.63 16 46 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 47 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 48 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 49 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 50 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 51 H 0.07 1.47 5.58 -51.93 -0.29 1.18 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -31.76 390.13 -10.49 -42.25 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.61 Total: 4.69 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.66 Total: -10.96 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.49 Total: -46.86 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.06 Total: -11.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.76 -10.49 -42.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112703170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.463 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds