Wall clock time and date at job start Tue Mar 31 2020 15:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.53877 * 2 1 4 4 C 1.53124 * 109.50482 * 120.10128 * 2 1 3 5 5 C 1.53118 * 109.16228 * 177.59351 * 4 2 1 6 6 C 1.53033 * 109.27602 * 302.34510 * 5 4 2 7 7 N 1.46844 * 109.52733 * 59.18157 * 6 5 4 8 8 C 1.46896 * 111.00401 * 174.15769 * 7 6 5 9 9 C 1.50707 * 109.47043 * 66.04715 * 8 7 6 10 10 O 1.21292 * 119.99574 * 353.97194 * 9 8 7 11 11 N 1.34777 * 120.00063 * 173.98154 * 9 8 7 12 12 C 1.46498 * 119.99623 * 185.15464 * 11 9 8 13 13 C 1.50702 * 109.47183 * 90.00087 * 12 11 9 14 14 H 1.08007 * 120.00075 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00483 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00281 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99479 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47392 * 90.00397 * 17 15 13 19 19 H 1.48502 * 109.46980 * 210.00175 * 17 15 13 20 20 H 1.48500 * 109.47521 * 330.00090 * 17 15 13 21 21 C 1.39924 * 119.99873 * 5.15378 * 11 9 8 22 22 C 1.38869 * 120.06965 * 290.78254 * 21 11 9 23 23 C 1.38115 * 119.93086 * 179.76626 * 22 21 11 24 24 C 1.38284 * 120.06589 * 0.49326 * 23 22 21 25 25 C 1.38288 * 120.14343 * 359.76022 * 24 23 22 26 26 C 1.38110 * 120.06894 * 0.02562 * 25 24 23 27 27 C 1.46847 * 111.19646 * 298.25574 * 7 6 5 28 28 H 1.09001 * 109.47081 * 299.90333 * 1 2 3 29 29 H 1.09002 * 109.46968 * 59.89855 * 1 2 3 30 30 H 1.09000 * 109.47463 * 179.90415 * 1 2 3 31 31 H 1.08997 * 109.47050 * 180.09916 * 3 2 1 32 32 H 1.09000 * 109.47197 * 300.10264 * 3 2 1 33 33 H 1.09007 * 109.47004 * 60.09777 * 3 2 1 34 34 H 1.08999 * 109.52176 * 57.68690 * 4 2 1 35 35 H 1.09000 * 109.51965 * 297.49744 * 4 2 1 36 36 H 1.08998 * 109.50393 * 182.40167 * 5 4 2 37 37 H 1.09005 * 109.53143 * 62.30356 * 5 4 2 38 38 H 1.09001 * 109.46565 * 299.15975 * 6 5 4 39 39 H 1.08999 * 109.45275 * 179.18749 * 6 5 4 40 40 H 1.09003 * 109.47259 * 186.04326 * 8 7 6 41 41 H 1.08998 * 109.47444 * 306.04804 * 8 7 6 42 42 H 1.09001 * 109.46763 * 209.99393 * 12 11 9 43 43 H 1.08994 * 109.47735 * 329.99930 * 12 11 9 44 44 H 0.96998 * 119.99971 * 179.97438 * 16 15 13 45 45 H 1.08002 * 120.03886 * 359.97438 * 22 21 11 46 46 H 1.08000 * 119.96684 * 180.25309 * 23 22 21 47 47 H 1.08004 * 119.92923 * 179.74501 * 24 23 22 48 48 H 1.07994 * 119.96360 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.03818 * 179.97438 * 26 25 24 50 50 H 1.09002 * 109.46804 * 181.75743 * 27 7 6 51 51 H 1.08995 * 109.46538 * 301.72866 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0412 -0.7239 1.2487 5 6 3.5712 -0.7721 1.2107 6 6 4.0228 -1.4731 -0.0725 7 7 3.5092 -0.7422 -1.2379 8 6 4.0372 -1.3059 -2.4875 9 6 3.5009 -2.7018 -2.6749 10 8 2.8421 -3.2210 -1.7988 11 7 3.7535 -3.3732 -3.8159 12 6 3.1398 -4.6834 -4.0459 13 6 1.8156 -4.5025 -4.7422 14 1 1.4659 -3.5107 -4.9884 15 6 1.0504 -5.6030 -5.0651 16 7 -0.1055 -5.4451 -5.6723 17 14 1.6555 -7.3184 -4.6399 18 1 1.1745 -7.6915 -3.2854 19 1 1.1327 -8.2885 -5.6354 20 1 3.1402 -7.3391 -4.6611 21 6 4.6019 -2.8188 -4.7806 22 6 4.2000 -1.7020 -5.5015 23 6 5.0417 -1.1543 -6.4497 24 6 6.2794 -1.7230 -6.6887 25 6 6.6804 -2.8383 -5.9762 26 6 5.8451 -3.3881 -5.0236 27 6 2.0409 -0.7235 -1.2481 28 1 -0.3633 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3634 -1.0276 -0.0017 31 1 3.1317 1.4406 -0.0018 32 1 1.6775 1.9567 -0.8891 33 1 1.6804 1.9557 0.8909 34 1 1.6452 -1.7392 1.2689 35 1 1.7157 -0.1871 2.1398 36 1 3.9395 -1.3236 2.0757 37 1 3.9684 0.2429 1.2301 38 1 3.6374 -2.4926 -0.0844 39 1 5.1120 -1.4961 -0.1094 40 1 3.7282 -0.6823 -3.3265 41 1 5.1257 -1.3382 -2.4402 42 1 3.7982 -5.2886 -4.6691 43 1 2.9825 -5.1838 -3.0905 44 1 -0.6436 -6.2194 -5.8997 45 1 3.2317 -1.2602 -5.3186 46 1 4.7314 -0.2833 -7.0078 47 1 6.9341 -1.2953 -7.4336 48 1 7.6474 -3.2802 -6.1655 49 1 6.1587 -4.2593 -4.4678 50 1 1.6904 -0.2023 -2.1390 51 1 1.6647 -1.7464 -1.2544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112703170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:15 Heat of formation + Delta-G solvation = -21.221838 kcal Electronic energy + Delta-G solvation = -29946.923135 eV Core-core repulsion = 26231.264210 eV Total energy + Delta-G solvation = -3715.658925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.89001 -40.43504 -39.25883 -36.71661 -35.60027 -34.79808 -33.10414 -31.87830 -31.31173 -29.95384 -28.32344 -28.06597 -27.46230 -24.99155 -24.02678 -23.44295 -23.30525 -22.37079 -20.50517 -19.52284 -19.17944 -18.44444 -17.66074 -17.15074 -16.77369 -16.58105 -16.15636 -15.89747 -15.76036 -15.60921 -15.26683 -15.06917 -14.88618 -14.64335 -14.29767 -14.20753 -14.08761 -13.79906 -13.53272 -13.41597 -13.30649 -13.14434 -12.84856 -12.74515 -12.58649 -12.44427 -12.33876 -12.25031 -12.13403 -11.98846 -11.81289 -11.74038 -11.49981 -11.38688 -11.15508 -11.08002 -10.90802 -10.12657 -9.82912 -9.32055 -9.10098 -8.41272 -6.46695 0.35147 0.50000 1.24915 1.28277 1.36866 1.56402 2.14051 2.23048 2.84945 2.86970 2.92985 3.57527 3.71448 3.85801 3.96893 4.04733 4.11619 4.13711 4.30388 4.32441 4.39858 4.46049 4.50744 4.54961 4.58551 4.59658 4.67910 4.69539 4.77841 4.82517 4.83261 4.87261 4.92920 4.97552 5.05565 5.07078 5.12253 5.14521 5.21655 5.30988 5.33321 5.34409 5.42946 5.44919 5.54412 5.62774 5.67367 5.71065 5.89973 6.03503 6.05492 6.15409 6.52885 6.61722 7.11775 7.25936 8.75475 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.009210 B = 0.004822 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.344046 B = 5805.562006 C = 7598.336295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.123 4.123 4 C -0.108 4.108 5 C -0.106 4.106 6 C 0.036 3.964 7 N -0.496 5.496 8 C 0.048 3.952 9 C 0.478 3.522 10 O -0.567 6.567 11 N -0.561 5.561 12 C 0.229 3.771 13 C -0.534 4.534 14 H 0.027 0.973 15 C 0.016 3.984 16 N -0.941 5.941 17 Si 0.944 3.056 18 H -0.274 1.274 19 H -0.271 1.271 20 H -0.243 1.243 21 C 0.122 3.878 22 C -0.135 4.135 23 C -0.105 4.105 24 C -0.117 4.117 25 C -0.102 4.102 26 C -0.136 4.136 27 C 0.051 3.949 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.035 0.965 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.041 0.959 43 H 0.023 0.977 44 H 0.269 0.731 45 H 0.103 0.897 46 H 0.149 0.851 47 H 0.160 0.840 48 H 0.156 0.844 49 H 0.122 0.878 50 H 0.054 0.946 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.939 13.105 6.650 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.059 4.059 3 C -0.180 4.180 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.091 4.091 7 N -0.217 5.217 8 C -0.084 4.084 9 C 0.267 3.733 10 O -0.446 6.446 11 N -0.288 5.288 12 C 0.108 3.892 13 C -0.572 4.572 14 H 0.046 0.954 15 C -0.183 4.183 16 N -0.580 5.580 17 Si 0.766 3.234 18 H -0.200 1.200 19 H -0.196 1.196 20 H -0.166 1.166 21 C 0.031 3.969 22 C -0.155 4.155 23 C -0.123 4.123 24 C -0.135 4.135 25 C -0.120 4.120 26 C -0.155 4.155 27 C -0.077 4.077 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.079 0.921 45 H 0.121 0.879 46 H 0.166 0.834 47 H 0.177 0.823 48 H 0.174 0.826 49 H 0.140 0.860 50 H 0.073 0.927 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 14.591 13.217 7.109 20.932 hybrid contribution -1.304 -2.218 -0.352 2.597 sum 13.287 10.999 6.757 18.526 Atomic orbital electron populations 1.21833 0.94584 1.00863 1.02495 1.20557 0.94928 0.96805 0.93570 1.21717 1.02021 0.92956 1.01322 1.21620 0.96185 0.99199 0.97538 1.21563 0.95316 1.01809 0.95682 1.22350 0.99707 0.96313 0.90773 1.62527 1.08208 1.50048 1.00947 1.22411 1.02154 0.88583 0.95265 1.22737 0.79854 0.89805 0.80867 1.90577 1.41240 1.70394 1.42429 1.45714 1.45408 1.20415 1.17285 1.19350 0.92401 0.81658 0.95800 1.21412 1.03820 0.93617 1.38372 0.95416 1.25777 0.94597 1.03740 0.94153 1.70033 1.13457 1.32240 1.42312 0.85774 0.80421 0.78735 0.78433 1.19958 1.19581 1.16603 1.17972 0.90486 0.95612 0.92800 1.21354 0.99550 0.97421 0.97127 1.21326 0.94132 1.00455 0.96386 1.21568 0.96322 0.95771 0.99799 1.21360 1.00098 0.96073 0.94474 1.21394 0.92722 1.00976 1.00454 1.22313 0.87685 0.99190 0.98502 0.90403 0.92803 0.94794 0.91314 0.93422 0.91797 0.94641 0.89900 0.90563 0.89609 0.95143 0.90152 0.87413 0.86072 0.94100 0.95904 0.92149 0.87890 0.83366 0.82274 0.82600 0.86024 0.92719 0.95393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.48 71.98 0.61 -3.00 16 2 C -0.06 -1.53 0.77 -52.13 -0.04 -1.57 16 3 C -0.12 -2.61 8.04 71.98 0.58 -2.03 16 4 C -0.11 -2.67 4.79 30.68 0.15 -2.52 16 5 C -0.11 -2.41 5.74 30.64 0.18 -2.24 16 6 C 0.04 1.04 5.09 86.33 0.44 1.48 16 7 N -0.50 -14.93 4.14 -900.93 -3.73 -18.66 16 8 C 0.05 1.50 4.60 85.56 0.39 1.90 16 9 C 0.48 20.07 6.98 87.66 0.61 20.68 16 10 O -0.57 -27.94 11.21 -3.07 -0.03 -27.97 16 11 N -0.56 -24.28 2.50 -635.30 -1.59 -25.87 16 12 C 0.23 11.70 4.22 85.63 0.36 12.06 16 13 C -0.53 -32.30 9.94 25.60 0.25 -32.05 16 14 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 15 C 0.02 0.96 5.47 84.65 0.46 1.42 16 16 N -0.94 -60.27 13.96 21.45 0.30 -59.97 16 17 Si 0.94 45.50 27.47 68.60 1.88 47.39 16 18 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.24 -10.68 6.54 99.48 0.65 -10.03 16 21 C 0.12 4.30 4.53 38.15 0.17 4.48 16 22 C -0.13 -4.32 8.27 22.39 0.19 -4.14 16 23 C -0.10 -2.46 10.04 22.25 0.22 -2.23 16 24 C -0.12 -2.25 10.04 22.29 0.22 -2.03 16 25 C -0.10 -2.15 10.04 22.25 0.22 -1.93 16 26 C -0.14 -3.93 9.73 22.39 0.22 -3.71 16 27 C 0.05 1.73 3.69 86.33 0.32 2.05 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.47 6.01 -2.39 -0.01 1.45 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.68 6.59 -2.38 -0.02 1.67 16 38 H 0.03 1.12 5.80 -2.39 -0.01 1.11 16 39 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 40 H 0.11 3.29 6.33 -2.39 -0.02 3.27 16 41 H 0.12 3.24 8.06 -2.39 -0.02 3.23 16 42 H 0.04 1.98 6.95 -2.39 -0.02 1.97 16 43 H 0.02 1.24 6.79 -2.39 -0.02 1.22 16 44 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 45 H 0.10 3.64 7.62 -2.91 -0.02 3.62 16 46 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 47 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 48 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 49 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 50 H 0.05 1.90 8.12 -2.39 -0.02 1.88 16 51 H 0.03 1.22 5.58 -2.39 -0.01 1.21 16 Total: -1.00 -75.97 390.13 3.23 -72.74 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.84 Total: 25.75 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 5.56 Total: -13.40 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -5.02 Total: -104.50 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.03 Total: -27.97 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.39 kcal Total: -75.97 3.23 -72.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112703170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.516 kcal (2) G-P(sol) polarization free energy of solvation -75.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds