Wall clock time and date at job start Tue Mar 31 2020 16:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.47339 * 2 1 4 4 C 1.37855 * 119.79459 * 99.45894 * 3 2 1 5 5 C 1.38265 * 119.95712 * 180.02562 * 4 3 2 6 6 C 1.38091 * 119.89166 * 0.15395 * 5 4 3 7 7 C 1.38575 * 120.48237 * 0.02562 * 6 5 4 8 8 C 1.38414 * 119.86588 * 359.70678 * 7 6 5 9 9 N 1.39416 * 122.94961 * 180.47917 * 8 7 6 10 10 C 1.46901 * 110.99937 * 105.34865 * 9 8 7 11 11 C 1.50697 * 109.47005 * 156.97664 * 10 9 8 12 12 O 1.21281 * 119.99773 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99891 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99952 * 359.97438 * 13 11 10 15 15 C 1.52995 * 109.46876 * 90.00486 * 14 13 11 16 16 C 1.46493 * 119.99798 * 180.02562 * 13 11 10 17 17 C 1.50698 * 109.47272 * 89.99440 * 16 13 11 18 18 H 1.07995 * 120.00244 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00035 * 179.97438 * 17 16 13 20 20 N 1.31515 * 120.00008 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00033 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47073 * 60.00244 * 21 19 17 23 23 H 1.48497 * 109.47203 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47251 * 300.00407 * 21 19 17 25 25 C 1.46422 * 113.13299 * 339.79461 * 9 8 7 26 26 C 1.53379 * 108.67305 * 53.34724 * 25 9 8 27 27 C 1.50931 * 118.10683 * 179.36294 * 7 6 5 28 28 H 1.08994 * 109.47066 * 65.01337 * 1 2 3 29 29 H 1.09001 * 109.46954 * 185.01649 * 1 2 3 30 30 H 1.09003 * 109.46660 * 305.01350 * 1 2 3 31 31 H 1.09007 * 109.46879 * 240.00051 * 2 1 3 32 32 H 1.09001 * 109.47283 * 120.00306 * 2 1 3 33 33 H 1.08004 * 120.01783 * 359.97438 * 4 3 2 34 34 H 1.07996 * 120.05310 * 180.17202 * 5 4 3 35 35 H 1.07993 * 119.76290 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.47393 * 276.97887 * 10 9 8 37 37 H 1.09002 * 109.46866 * 36.97341 * 10 9 8 38 38 H 1.08994 * 109.47252 * 210.00485 * 14 13 11 39 39 H 1.08996 * 109.47141 * 330.00561 * 14 13 11 40 40 H 1.09000 * 109.47631 * 300.00056 * 15 14 13 41 41 H 1.09006 * 109.47028 * 60.00023 * 15 14 13 42 42 H 1.09001 * 109.47463 * 179.97438 * 15 14 13 43 43 H 1.09006 * 109.47330 * 209.99272 * 16 13 11 44 44 H 1.08998 * 109.47438 * 329.99325 * 16 13 11 45 45 H 0.97001 * 120.00300 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.60684 * 293.58739 * 25 9 8 47 47 H 1.09002 * 109.73326 * 173.18348 * 25 9 8 48 48 H 1.09005 * 109.76893 * 51.37613 * 26 25 9 49 49 H 1.09003 * 109.76858 * 172.09719 * 26 25 9 50 50 H 1.09007 * 109.50360 * 44.55842 * 27 7 6 51 51 H 1.08998 * 109.43870 * 284.62692 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.4461 2.0010 1.1801 5 6 2.9072 3.3045 1.1840 6 6 2.9490 4.0232 0.0056 7 6 2.5314 3.4480 -1.1839 8 6 2.0741 2.1416 -1.1945 9 7 1.6481 1.4967 -2.3548 10 6 2.6486 0.5242 -2.8142 11 6 1.9789 -0.5182 -3.6721 12 8 0.7856 -0.4572 -3.8799 13 7 2.7060 -1.5188 -4.2076 14 6 4.1473 -1.5928 -3.9561 15 6 4.4033 -2.4239 -2.6973 16 6 2.0550 -2.5318 -5.0420 17 6 2.0747 -2.0854 -6.4812 18 1 2.5273 -1.1418 -6.7478 19 6 1.5159 -2.8823 -7.4579 20 7 0.9653 -4.0317 -7.1333 21 14 1.5410 -2.3294 -9.2419 22 1 2.9471 -2.1513 -9.6853 23 1 0.8811 -3.3562 -10.0877 24 1 0.8143 -1.0407 -9.3711 25 6 1.2860 2.4241 -3.4284 26 6 2.4594 3.3830 -3.6656 27 6 2.5863 4.2870 -2.4373 28 1 -0.3633 0.4341 -0.9314 29 1 -0.3633 -1.0237 0.0899 30 1 -0.3633 0.5897 0.8417 31 1 1.8934 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.4093 1.4380 2.1010 34 1 3.2343 3.7597 2.1071 35 1 3.3099 5.0411 0.0110 36 1 3.4135 1.0375 -3.3968 37 1 3.1104 0.0432 -1.9519 38 1 4.6411 -2.0612 -4.8074 39 1 4.5435 -0.5873 -3.8143 40 1 3.9095 -1.9556 -1.8459 41 1 4.0071 -3.4295 -2.8391 42 1 5.4758 -2.4794 -2.5104 43 1 2.5884 -3.4778 -4.9476 44 1 1.0231 -2.6625 -4.7162 45 1 0.5718 -4.5922 -7.8203 46 1 0.4022 2.9924 -3.1384 47 1 1.0788 1.8667 -4.3420 48 1 3.3791 2.8137 -3.8011 49 1 2.2672 3.9889 -4.5511 50 1 3.5358 4.8211 -2.4764 51 1 1.7666 5.0053 -2.4292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114457221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:20 Heat of formation + Delta-G solvation = -8.580069 kcal Electronic energy + Delta-G solvation = -30017.901837 eV Core-core repulsion = 26302.791100 eV Total energy + Delta-G solvation = -3715.110737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95319 -38.86362 -36.89914 -35.24715 -34.93144 -32.81412 -32.17590 -30.37084 -30.09587 -29.24436 -28.11360 -26.43406 -24.48283 -23.54174 -23.18914 -22.97865 -22.30321 -20.47201 -19.64393 -18.15182 -16.99855 -16.60629 -16.31200 -15.98078 -15.73677 -15.28844 -14.67698 -14.50802 -14.44030 -14.14956 -13.69729 -13.67180 -13.52631 -13.33372 -13.12466 -12.85896 -12.76031 -12.51415 -12.37614 -12.09335 -11.99260 -11.92940 -11.66357 -11.43714 -11.26538 -11.14764 -11.03226 -10.91914 -10.75560 -10.71575 -10.67215 -10.51294 -10.40129 -10.11271 -9.63882 -9.44322 -8.66063 -8.58803 -8.42315 -7.73403 -7.62527 -6.03236 -4.07979 1.33489 1.35007 3.31404 3.36256 3.37515 3.47007 3.52886 3.75737 4.17999 4.45376 4.63536 4.70138 4.83400 4.89660 4.95749 5.09070 5.16937 5.23150 5.27555 5.31119 5.31827 5.40096 5.44006 5.49699 5.53472 5.62263 5.65215 5.67217 5.76020 5.78591 5.80278 5.92134 5.95969 6.03547 6.08252 6.16773 6.21448 6.22972 6.26217 6.41293 6.46727 6.49438 6.56616 6.67557 6.79854 7.01073 7.14450 7.47130 7.51386 7.58282 7.93499 8.25190 8.46037 8.91899 9.15584 9.57128 11.04682 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003627 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.595493 B = 7718.731715 C = 8393.149386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.080 4.080 4 C -0.111 4.111 5 C -0.135 4.135 6 C -0.112 4.112 7 C -0.118 4.118 8 C 0.120 3.880 9 N -0.472 5.472 10 C 0.036 3.964 11 C 0.506 3.494 12 O -0.519 6.519 13 N -0.599 5.599 14 C 0.106 3.894 15 C -0.169 4.169 16 C 0.249 3.751 17 C -0.526 4.526 18 H 0.055 0.945 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.059 3.941 26 C -0.161 4.161 27 C -0.076 4.076 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.263 0.737 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.073 0.927 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.373 13.617 15.324 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 C -0.082 4.082 4 C -0.129 4.129 5 C -0.154 4.154 6 C -0.130 4.130 7 C -0.121 4.121 8 C 0.023 3.977 9 N -0.187 5.187 10 C -0.093 4.093 11 C 0.291 3.709 12 O -0.394 6.394 13 N -0.333 5.333 14 C -0.019 4.019 15 C -0.228 4.228 16 C 0.130 3.870 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.068 4.068 26 C -0.200 4.200 27 C -0.113 4.113 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.114 0.886 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.092 0.908 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.184 13.164 15.169 21.015 hybrid contribution 0.773 0.721 -1.160 1.570 sum 6.957 13.885 14.008 20.915 Atomic orbital electron populations 1.21613 0.94248 1.01225 1.02484 1.20532 0.97079 0.91937 1.02156 1.19894 0.99667 0.97089 0.91572 1.20855 0.99652 0.95281 0.97140 1.20955 1.01866 0.94781 0.97812 1.20888 1.00680 0.99456 0.92009 1.19982 1.00910 0.95516 0.95731 1.18388 0.96370 0.92087 0.90860 1.58078 1.39470 1.16885 1.04270 1.22292 0.93136 0.93959 0.99872 1.20065 0.87589 0.82447 0.80773 1.90674 1.14608 1.74325 1.59835 1.48254 1.07342 1.27917 1.49746 1.21402 0.82899 0.99514 0.98039 1.22230 1.00986 1.01525 0.98046 1.19228 0.94070 0.85196 0.88503 1.21391 1.38033 1.05154 0.91895 0.92647 1.24923 0.95083 0.94886 0.99135 1.69920 1.38300 1.11342 1.33775 0.86589 0.78136 0.78442 0.84413 1.20307 1.21192 1.20220 1.22254 0.96821 0.92946 0.94805 1.22243 1.00449 0.99186 0.98114 1.20533 1.02258 0.97023 0.91476 0.90961 0.92945 0.93705 0.90499 0.92111 0.86189 0.86422 0.86545 0.91438 0.88169 0.89908 0.92137 0.93167 0.91901 0.92195 0.95140 0.93880 0.92688 0.90198 0.88631 0.91492 0.90460 0.90808 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 37.16 0.37 -1.54 16 2 C -0.08 -1.05 5.48 -27.88 -0.15 -1.20 16 3 C -0.08 -1.04 4.84 -104.27 -0.50 -1.54 16 4 C -0.11 -1.22 9.64 -39.71 -0.38 -1.61 16 5 C -0.14 -1.38 10.05 -39.63 -0.40 -1.77 16 6 C -0.11 -1.18 9.63 -39.51 -0.38 -1.56 16 7 C -0.12 -1.42 5.75 -104.32 -0.60 -2.02 16 8 C 0.12 1.64 5.08 -83.85 -0.43 1.21 16 9 N -0.47 -7.17 3.23 -172.65 -0.56 -7.73 16 10 C 0.04 0.55 2.85 -4.98 -0.01 0.54 16 11 C 0.51 10.25 7.22 -10.99 -0.08 10.17 16 12 O -0.52 -12.70 14.89 5.56 0.08 -12.62 16 13 N -0.60 -12.35 2.46 -175.07 -0.43 -12.78 16 14 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 15 C -0.17 -2.25 10.24 37.15 0.38 -1.87 16 16 C 0.25 6.42 5.16 -5.20 -0.03 6.39 16 17 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 18 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 21 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 C 0.06 0.86 5.49 -3.89 -0.02 0.84 16 26 C -0.16 -1.87 6.02 -26.52 -0.16 -2.03 16 27 C -0.08 -0.78 5.82 -27.75 -0.16 -0.95 16 28 H 0.07 1.18 7.86 -51.93 -0.41 0.77 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.14 5.01 -51.92 -0.26 0.88 16 32 H 0.06 0.68 7.99 -51.93 -0.42 0.26 16 33 H 0.12 1.10 8.03 -52.48 -0.42 0.68 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.07 0.97 5.42 -51.93 -0.28 0.69 16 37 H 0.10 1.42 4.86 -51.93 -0.25 1.17 16 38 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 39 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 40 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 44 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.08 1.13 8.11 -51.93 -0.42 0.70 16 47 H 0.10 1.65 6.78 -51.93 -0.35 1.30 16 48 H 0.07 0.81 6.31 -51.93 -0.33 0.48 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -31.99 395.46 -10.65 -42.64 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.42 Total: 2.23 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.00 Total: -8.68 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.25 Total: -46.26 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.99 -10.65 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114457221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.064 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds