Wall clock time and date at job start Tue Mar 31 2020 16:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.47339 * 2 1 4 4 C 1.37855 * 119.79459 * 99.45894 * 3 2 1 5 5 C 1.38265 * 119.95712 * 180.02562 * 4 3 2 6 6 C 1.38091 * 119.89166 * 0.15395 * 5 4 3 7 7 C 1.38575 * 120.48237 * 0.02562 * 6 5 4 8 8 C 1.38414 * 119.86588 * 359.70678 * 7 6 5 9 9 N 1.39416 * 122.94961 * 180.47917 * 8 7 6 10 10 C 1.46901 * 110.99937 * 105.34865 * 9 8 7 11 11 C 1.50697 * 109.47005 * 156.97664 * 10 9 8 12 12 O 1.21281 * 119.99773 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99891 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99952 * 359.97438 * 13 11 10 15 15 C 1.52995 * 109.46876 * 90.00486 * 14 13 11 16 16 C 1.46493 * 119.99798 * 180.02562 * 13 11 10 17 17 C 1.50698 * 109.47272 * 89.99440 * 16 13 11 18 18 H 1.07995 * 120.00244 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00035 * 179.97438 * 17 16 13 20 20 N 1.31515 * 120.00008 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00033 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47073 * 60.00244 * 21 19 17 23 23 H 1.48497 * 109.47203 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47251 * 300.00407 * 21 19 17 25 25 C 1.46422 * 113.13299 * 339.79461 * 9 8 7 26 26 C 1.53379 * 108.67305 * 53.34724 * 25 9 8 27 27 C 1.50931 * 118.10683 * 179.36294 * 7 6 5 28 28 H 1.08994 * 109.47066 * 65.01337 * 1 2 3 29 29 H 1.09001 * 109.46954 * 185.01649 * 1 2 3 30 30 H 1.09003 * 109.46660 * 305.01350 * 1 2 3 31 31 H 1.09007 * 109.46879 * 240.00051 * 2 1 3 32 32 H 1.09001 * 109.47283 * 120.00306 * 2 1 3 33 33 H 1.08004 * 120.01783 * 359.97438 * 4 3 2 34 34 H 1.07996 * 120.05310 * 180.17202 * 5 4 3 35 35 H 1.07993 * 119.76290 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.47393 * 276.97887 * 10 9 8 37 37 H 1.09002 * 109.46866 * 36.97341 * 10 9 8 38 38 H 1.08994 * 109.47252 * 210.00485 * 14 13 11 39 39 H 1.08996 * 109.47141 * 330.00561 * 14 13 11 40 40 H 1.09000 * 109.47631 * 300.00056 * 15 14 13 41 41 H 1.09006 * 109.47028 * 60.00023 * 15 14 13 42 42 H 1.09001 * 109.47463 * 179.97438 * 15 14 13 43 43 H 1.09006 * 109.47330 * 209.99272 * 16 13 11 44 44 H 1.08998 * 109.47438 * 329.99325 * 16 13 11 45 45 H 0.97001 * 120.00300 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.60684 * 293.58739 * 25 9 8 47 47 H 1.09002 * 109.73326 * 173.18348 * 25 9 8 48 48 H 1.09005 * 109.76893 * 51.37613 * 26 25 9 49 49 H 1.09003 * 109.76858 * 172.09719 * 26 25 9 50 50 H 1.09007 * 109.50360 * 44.55842 * 27 7 6 51 51 H 1.08998 * 109.43870 * 284.62692 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.4461 2.0010 1.1801 5 6 2.9072 3.3045 1.1840 6 6 2.9490 4.0232 0.0056 7 6 2.5314 3.4480 -1.1839 8 6 2.0741 2.1416 -1.1945 9 7 1.6481 1.4967 -2.3548 10 6 2.6486 0.5242 -2.8142 11 6 1.9789 -0.5182 -3.6721 12 8 0.7856 -0.4572 -3.8799 13 7 2.7060 -1.5188 -4.2076 14 6 4.1473 -1.5928 -3.9561 15 6 4.4033 -2.4239 -2.6973 16 6 2.0550 -2.5318 -5.0420 17 6 2.0747 -2.0854 -6.4812 18 1 2.5273 -1.1418 -6.7478 19 6 1.5159 -2.8823 -7.4579 20 7 0.9653 -4.0317 -7.1333 21 14 1.5410 -2.3294 -9.2419 22 1 2.9471 -2.1513 -9.6853 23 1 0.8811 -3.3562 -10.0877 24 1 0.8143 -1.0407 -9.3711 25 6 1.2860 2.4241 -3.4284 26 6 2.4594 3.3830 -3.6656 27 6 2.5863 4.2870 -2.4373 28 1 -0.3633 0.4341 -0.9314 29 1 -0.3633 -1.0237 0.0899 30 1 -0.3633 0.5897 0.8417 31 1 1.8934 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.4093 1.4380 2.1010 34 1 3.2343 3.7597 2.1071 35 1 3.3099 5.0411 0.0110 36 1 3.4135 1.0375 -3.3968 37 1 3.1104 0.0432 -1.9519 38 1 4.6411 -2.0612 -4.8074 39 1 4.5435 -0.5873 -3.8143 40 1 3.9095 -1.9556 -1.8459 41 1 4.0071 -3.4295 -2.8391 42 1 5.4758 -2.4794 -2.5104 43 1 2.5884 -3.4778 -4.9476 44 1 1.0231 -2.6625 -4.7162 45 1 0.5718 -4.5922 -7.8203 46 1 0.4022 2.9924 -3.1384 47 1 1.0788 1.8667 -4.3420 48 1 3.3791 2.8137 -3.8011 49 1 2.2672 3.9889 -4.5511 50 1 3.5358 4.8211 -2.4764 51 1 1.7666 5.0053 -2.4292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114457221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:19 Heat of formation + Delta-G solvation = -25.565583 kcal Electronic energy + Delta-G solvation = -30018.638384 eV Core-core repulsion = 26302.791100 eV Total energy + Delta-G solvation = -3715.847284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00430 -40.36049 -37.93513 -36.84362 -35.95969 -34.89747 -33.21174 -31.66197 -31.27120 -30.43761 -29.41578 -28.09447 -25.59249 -24.92711 -24.35598 -24.11806 -23.79161 -21.40617 -20.70866 -19.65932 -18.62072 -18.20563 -17.60827 -17.30402 -16.99912 -16.54462 -16.16772 -15.98928 -15.38305 -15.33774 -14.96344 -14.84817 -14.66879 -14.59352 -14.26811 -14.20364 -13.87364 -13.74023 -13.62252 -13.52070 -13.26553 -13.16063 -13.02418 -12.88406 -12.66138 -12.61221 -12.48816 -12.21258 -12.15245 -11.97255 -11.90414 -11.77603 -11.72447 -11.61840 -11.42545 -10.71727 -10.63841 -10.03308 -9.42403 -9.40929 -8.73138 -8.21577 -6.36478 0.46765 0.50472 1.35508 1.39847 1.47031 1.86400 2.18731 2.40005 2.80402 2.95174 3.07708 3.65333 3.78952 3.80543 3.88873 3.97426 3.99936 4.05401 4.18431 4.25747 4.36548 4.39482 4.41834 4.47794 4.51951 4.57612 4.61029 4.65614 4.78324 4.82910 4.87081 4.91245 4.96951 4.97362 5.02254 5.05453 5.07861 5.16683 5.19111 5.23351 5.29805 5.36885 5.43624 5.51890 5.58550 5.64916 5.73071 5.85040 5.92270 6.07577 6.09112 6.52691 6.71355 6.82792 7.29599 7.54298 8.85162 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003627 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.595493 B = 7718.731715 C = 8393.149386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 C -0.095 4.095 4 C -0.112 4.112 5 C -0.130 4.130 6 C -0.111 4.111 7 C -0.127 4.127 8 C 0.095 3.905 9 N -0.489 5.489 10 C 0.057 3.943 11 C 0.501 3.499 12 O -0.573 6.573 13 N -0.605 5.605 14 C 0.099 3.901 15 C -0.161 4.161 16 C 0.267 3.733 17 C -0.541 4.541 18 H 0.053 0.947 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.966 3.034 22 H -0.260 1.260 23 H -0.279 1.279 24 H -0.278 1.278 25 C 0.060 3.940 26 C -0.153 4.153 27 C -0.071 4.071 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.096 0.904 43 H 0.020 0.980 44 H -0.006 1.006 45 H 0.267 0.733 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.088 0.912 50 H 0.096 0.904 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.043 16.283 16.844 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 C -0.097 4.097 4 C -0.130 4.130 5 C -0.149 4.149 6 C -0.130 4.130 7 C -0.130 4.130 8 C -0.001 4.001 9 N -0.204 5.204 10 C -0.071 4.071 11 C 0.288 3.712 12 O -0.452 6.452 13 N -0.337 5.337 14 C -0.023 4.023 15 C -0.219 4.219 16 C 0.146 3.854 17 C -0.580 4.580 18 H 0.071 0.929 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.790 3.210 22 H -0.184 1.184 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.067 4.067 26 C -0.192 4.192 27 C -0.107 4.107 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.101 0.899 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.115 0.885 43 H 0.038 0.962 44 H 0.013 0.987 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.107 0.893 50 H 0.115 0.885 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.907 15.845 16.717 24.695 hybrid contribution -0.092 -0.099 -1.536 1.542 sum 8.815 15.746 15.181 23.582 Atomic orbital electron populations 1.21536 0.95336 1.00904 1.01252 1.20468 0.96113 0.92775 1.02003 1.19944 1.00728 0.96796 0.92257 1.21112 0.98927 0.95985 0.97023 1.21338 1.00374 0.94236 0.98904 1.21217 0.99727 1.00613 0.91397 1.20212 1.00682 0.94928 0.97139 1.18514 0.98271 0.93195 0.90133 1.57955 1.40003 1.17419 1.05020 1.22081 0.92836 0.92779 0.99442 1.20971 0.87088 0.82718 0.80387 1.90639 1.17170 1.75594 1.61765 1.48263 1.09488 1.26952 1.49025 1.21719 0.79659 1.01906 0.99031 1.22156 1.03317 0.99689 0.96740 1.18638 0.91796 0.86367 0.88647 1.21672 1.38165 1.05055 0.93093 0.92913 1.25849 0.94462 0.94865 1.03915 1.70049 1.38964 1.12482 1.35339 0.85499 0.78994 0.77786 0.78717 1.18397 1.20406 1.20362 1.22125 0.98331 0.93065 0.93214 1.22172 0.98583 0.98797 0.99625 1.20551 1.03795 0.96570 0.89817 0.94306 0.93310 0.92159 0.92812 0.89941 0.84252 0.83531 0.83938 0.89880 0.86500 0.90718 0.88932 0.92526 0.93998 0.88544 0.96186 0.98744 0.92456 0.90508 0.92468 0.91790 0.89298 0.88519 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.89 71.98 0.71 -3.06 16 2 C -0.08 -1.97 5.48 29.85 0.16 -1.81 16 3 C -0.10 -2.31 4.84 -19.63 -0.09 -2.41 16 4 C -0.11 -2.11 9.64 22.19 0.21 -1.90 16 5 C -0.13 -2.09 10.05 22.24 0.22 -1.86 16 6 C -0.11 -1.89 9.63 22.32 0.21 -1.67 16 7 C -0.13 -2.71 5.75 -19.67 -0.11 -2.83 16 8 C 0.09 2.48 5.08 38.30 0.19 2.68 16 9 N -0.49 -15.16 3.23 -700.16 -2.26 -17.42 16 10 C 0.06 1.77 2.85 85.56 0.24 2.01 16 11 C 0.50 21.38 7.22 87.66 0.63 22.01 16 12 O -0.57 -30.35 14.89 -3.03 -0.05 -30.40 16 13 N -0.60 -26.06 2.46 -826.19 -2.03 -28.09 16 14 C 0.10 3.10 5.93 86.38 0.51 3.61 16 15 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 16 C 0.27 14.66 5.16 85.63 0.44 15.10 16 17 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 18 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 19 C 0.01 0.47 5.46 84.66 0.46 0.93 16 20 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 21 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 C 0.06 1.81 5.49 86.52 0.48 2.29 16 26 C -0.15 -3.37 6.02 30.73 0.18 -3.19 16 27 C -0.07 -1.26 5.82 29.93 0.17 -1.08 16 28 H 0.04 1.34 7.86 -2.39 -0.02 1.33 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.62 5.01 -2.38 -0.01 1.61 16 32 H 0.08 1.72 7.99 -2.39 -0.02 1.70 16 33 H 0.14 2.02 8.03 -2.91 -0.02 2.00 16 34 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.08 2.30 5.42 -2.39 -0.01 2.29 16 37 H 0.12 3.23 4.86 -2.39 -0.01 3.22 16 38 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 39 H 0.09 2.29 6.44 -2.39 -0.02 2.28 16 40 H 0.06 1.37 7.22 -2.39 -0.02 1.35 16 41 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.02 1.12 8.07 -2.38 -0.02 1.10 16 44 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.08 2.28 8.11 -2.39 -0.02 2.26 16 47 H 0.06 2.14 6.78 -2.39 -0.02 2.12 16 48 H 0.06 1.44 6.31 -2.38 -0.02 1.43 16 49 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 51 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -74.96 395.46 4.50 -70.45 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.91 Total: 20.65 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.62 Total: -5.85 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -4.00 Total: -102.19 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.05 Total: -30.40 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -74.96 4.50 -70.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114457221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.886 kcal (2) G-P(sol) polarization free energy of solvation -74.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds