Wall clock time and date at job start Tue Mar 31 2020 15:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.05348 * 2 1 4 4 C 1.54087 * 110.16145 * 238.53589 * 2 1 3 5 5 C 1.54273 * 106.62065 * 240.87702 * 4 2 1 6 6 C 1.54893 * 104.19459 * 336.27913 * 5 4 2 7 7 C 1.54266 * 110.03564 * 121.41543 * 2 1 3 8 8 H 1.08999 * 110.48089 * 24.08553 * 7 2 1 9 9 N 1.46496 * 110.48624 * 261.57537 * 7 2 1 10 10 C 1.34782 * 119.99934 * 156.84001 * 9 7 2 11 11 O 1.21583 * 119.99788 * 359.97438 * 10 9 7 12 12 N 1.34769 * 120.00001 * 180.02562 * 10 9 7 13 13 C 1.46506 * 120.00066 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46754 * 35.00287 * 13 12 10 15 15 C 1.53000 * 109.47190 * 154.99828 * 13 12 10 16 16 C 1.50696 * 109.47311 * 295.00288 * 15 13 12 17 17 H 1.08006 * 120.00218 * 359.97438 * 16 15 13 18 18 C 1.37870 * 120.00323 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00244 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46982 * 60.00274 * 20 18 16 22 22 H 1.48499 * 109.46912 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47007 * 300.00140 * 20 18 16 24 24 C 1.50693 * 109.47442 * 275.00062 * 13 12 10 25 25 C 1.38233 * 120.00207 * 139.99344 * 24 13 12 26 26 C 1.38234 * 120.00037 * 179.72405 * 25 24 13 27 27 C 1.38234 * 120.00240 * 0.26327 * 26 25 24 28 28 C 1.38238 * 119.99693 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00082 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47339 * 298.58059 * 1 2 3 31 31 H 1.09000 * 109.47655 * 58.58350 * 1 2 3 32 32 H 1.09006 * 109.46979 * 178.57988 * 1 2 3 33 33 H 1.09004 * 109.47336 * 181.41950 * 3 2 1 34 34 H 1.09001 * 109.47582 * 301.41875 * 3 2 1 35 35 H 1.08995 * 109.47437 * 61.41697 * 3 2 1 36 36 H 1.09000 * 110.11476 * 121.53759 * 4 2 1 37 37 H 1.09002 * 109.96968 * 0.13413 * 4 2 1 38 38 H 1.08996 * 110.48875 * 217.60093 * 5 4 2 39 39 H 1.09004 * 110.59730 * 95.01063 * 5 4 2 40 40 H 1.09001 * 110.75291 * 279.62949 * 6 5 4 41 41 H 1.09000 * 110.75652 * 156.25737 * 6 5 4 42 42 H 0.96996 * 120.00537 * 336.83852 * 9 7 2 43 43 H 0.97003 * 120.00387 * 0.02562 * 12 10 9 44 44 H 1.08997 * 109.46769 * 55.00230 * 15 13 12 45 45 H 1.08999 * 109.47207 * 174.99956 * 15 13 12 46 46 H 0.97002 * 119.99857 * 179.97438 * 19 18 16 47 47 H 1.08002 * 120.00157 * 0.02562 * 25 24 13 48 48 H 1.07999 * 120.00009 * 180.28389 * 26 25 24 49 49 H 1.07997 * 120.00460 * 180.02562 * 27 26 25 50 50 H 1.08001 * 119.99643 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00025 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0611 -0.7550 -1.2338 5 6 2.8885 -1.9433 -0.7015 6 6 3.3132 -1.5032 0.7215 7 6 2.0585 -0.7554 1.2368 8 1 1.3134 -1.4643 1.5980 9 7 2.4230 0.1879 2.2967 10 6 2.4568 -0.2210 3.5806 11 8 2.1843 -1.3728 3.8590 12 7 2.7917 0.6469 4.5556 13 6 2.8278 0.2025 5.9512 14 1 3.1743 -0.8300 5.9948 15 6 3.7833 1.0949 6.7460 16 6 5.1878 0.9101 6.2322 17 1 5.3800 0.2244 5.4202 18 6 6.2276 1.6164 6.7986 19 7 5.9938 2.4511 7.7877 20 14 7.9688 1.3867 6.1621 21 1 8.0237 1.7581 4.7254 22 1 8.8961 2.2530 6.9335 23 1 8.3710 -0.0338 6.3220 24 6 1.4452 0.2940 6.5436 25 6 0.9881 -0.7001 7.3884 26 6 -0.2781 -0.6133 7.9362 27 6 -1.0892 0.4648 7.6351 28 6 -0.6338 1.4564 6.7864 29 6 0.6323 1.3697 6.2385 30 1 -0.3634 0.4916 0.9024 31 1 -0.3634 0.5357 -0.8770 32 1 -0.3633 -1.0274 -0.0255 33 1 3.1443 1.4263 -0.0255 34 1 1.6760 1.9623 -0.8770 35 1 1.7174 1.9471 0.9024 36 1 2.6928 -0.0983 -1.8319 37 1 1.2277 -1.1197 -1.8343 38 1 3.7655 -2.1083 -1.3274 39 1 2.2784 -2.8454 -0.6557 40 1 4.1718 -0.8331 0.6785 41 1 3.5296 -2.3704 1.3456 42 1 2.6401 1.1068 2.0746 43 1 3.0080 1.5661 4.3336 44 1 3.4880 2.1377 6.6294 45 1 3.7432 0.8217 7.8004 46 1 6.7254 2.9477 8.1864 47 1 1.6219 -1.5421 7.6242 48 1 -0.6335 -1.3877 8.5999 49 1 -2.0782 0.5329 8.0634 50 1 -1.2677 2.2986 6.5508 51 1 0.9879 2.1442 5.5751 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133679979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:55 Heat of formation + Delta-G solvation = -27.968609 kcal Electronic energy + Delta-G solvation = -29119.306776 eV Core-core repulsion = 25403.355289 eV Total energy + Delta-G solvation = -3715.951487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.23198 -39.14110 -38.09536 -35.13576 -33.45714 -32.65032 -32.32471 -30.88066 -30.38624 -28.79015 -27.63854 -27.30441 -24.92674 -24.30274 -22.24545 -21.92031 -21.26284 -20.29240 -19.73340 -18.94311 -17.80807 -16.79912 -16.19833 -16.06296 -15.32509 -15.06028 -14.92053 -14.56559 -14.48798 -14.15520 -14.00477 -13.49351 -13.42552 -13.24173 -12.98899 -12.97456 -12.71825 -12.47454 -12.32326 -12.07207 -11.94129 -11.65881 -11.49255 -11.15237 -11.10166 -10.97266 -10.87845 -10.69595 -10.68756 -10.61042 -10.59678 -10.52873 -10.40527 -9.73424 -9.57621 -9.27215 -8.75135 -8.48770 -8.42864 -8.22431 -8.11261 -6.06680 -4.09622 1.83698 1.85811 3.23465 3.29586 3.34678 3.37822 3.78300 4.26103 4.33890 4.41609 4.51182 4.62142 4.86782 5.12190 5.16179 5.20233 5.24522 5.29975 5.31071 5.32547 5.42555 5.44373 5.51197 5.56258 5.61318 5.64585 5.74763 5.79360 5.84080 5.92576 5.96481 5.99643 6.02580 6.08622 6.17061 6.22135 6.28419 6.31880 6.41625 6.48596 6.64328 6.89286 6.90187 6.91025 7.03389 7.17485 7.41531 7.46281 7.55781 7.73313 7.90585 8.29307 8.61419 8.96184 9.20505 9.55040 11.03874 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007774 B = 0.004537 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.048252 B = 6169.968792 C = 8834.718455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.146 4.146 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.137 4.137 7 C 0.172 3.828 8 H 0.091 0.909 9 N -0.747 5.747 10 C 0.703 3.297 11 O -0.599 6.599 12 N -0.718 5.718 13 C 0.202 3.798 14 H 0.086 0.914 15 C 0.024 3.976 16 C -0.518 4.518 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.069 4.069 25 C -0.108 4.108 26 C -0.123 4.123 27 C -0.136 4.136 28 C -0.126 4.126 29 C -0.106 4.106 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.394 0.606 43 H 0.395 0.605 44 H 0.024 0.976 45 H 0.034 0.966 46 H 0.262 0.738 47 H 0.120 0.880 48 H 0.115 0.885 49 H 0.113 0.887 50 H 0.113 0.887 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.789 -2.262 -14.093 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.077 4.077 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.176 4.176 7 C 0.066 3.934 8 H 0.109 0.891 9 N -0.405 5.405 10 C 0.403 3.597 11 O -0.478 6.478 12 N -0.370 5.370 13 C 0.097 3.903 14 H 0.104 0.896 15 C -0.013 4.013 16 C -0.556 4.556 17 H 0.076 0.924 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.070 4.070 25 C -0.126 4.126 26 C -0.141 4.141 27 C -0.154 4.154 28 C -0.144 4.144 29 C -0.125 4.125 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.231 0.769 43 H 0.229 0.771 44 H 0.042 0.958 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.138 0.862 48 H 0.133 0.867 49 H 0.131 0.869 50 H 0.131 0.869 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.937 -3.182 -13.677 18.431 hybrid contribution 1.252 0.867 -0.419 1.580 sum -10.685 -2.315 -14.097 17.840 Atomic orbital electron populations 1.21898 0.93990 1.01885 1.01753 1.21430 0.95812 0.95694 0.94755 1.21920 1.01300 0.95239 1.01915 1.22283 0.99419 0.96954 0.96444 1.22285 0.99561 0.97876 0.96404 1.22926 0.98219 1.00745 0.95702 1.21596 0.96248 0.90263 0.85285 0.89072 1.45395 1.75724 1.14286 1.05106 1.16042 0.78026 0.85104 0.80567 1.90858 1.56816 1.17679 1.82405 1.45131 1.72528 1.13123 1.06194 1.20091 0.90239 1.01202 0.78719 0.89636 1.19388 0.92514 0.94129 0.95305 1.21100 0.91730 1.24569 1.18183 0.92446 1.24978 0.99007 0.95189 0.94948 1.69952 1.32223 1.26779 1.24232 0.86664 0.84414 0.78153 0.78797 1.20353 1.21348 1.20233 1.20613 0.96819 0.93633 0.95982 1.21018 0.95699 0.98534 0.97393 1.21031 0.94590 0.98224 1.00291 1.20975 0.99495 0.95254 0.99713 1.21026 0.96257 0.98769 0.98362 1.20881 0.93854 0.97847 0.99897 0.92457 0.92654 0.92467 0.92049 0.92228 0.92125 0.91538 0.91630 0.91652 0.91573 0.91222 0.90975 0.76892 0.77130 0.95814 0.94755 0.92867 0.86220 0.86685 0.86941 0.86879 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.16 37.16 0.30 -0.95 16 2 C -0.08 -0.73 0.92 -153.28 -0.14 -0.87 16 3 C -0.15 -1.27 7.07 37.16 0.26 -1.01 16 4 C -0.11 -0.96 6.12 -25.50 -0.16 -1.12 16 5 C -0.12 -1.17 6.83 -25.07 -0.17 -1.34 16 6 C -0.14 -1.69 6.58 -24.74 -0.16 -1.85 16 7 C 0.17 2.18 2.57 -66.27 -0.17 2.01 16 8 H 0.09 1.35 7.32 -51.93 -0.38 0.97 16 9 N -0.75 -10.55 4.94 -57.06 -0.28 -10.83 16 10 C 0.70 12.93 8.52 -86.92 -0.74 12.18 16 11 O -0.60 -13.18 15.68 5.29 0.08 -13.10 16 12 N -0.72 -13.24 4.03 -59.81 -0.24 -13.48 16 13 C 0.20 4.21 2.12 -69.08 -0.15 4.07 16 14 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 15 C 0.02 0.58 4.50 -27.88 -0.13 0.46 16 16 C -0.52 -13.78 8.84 -34.44 -0.30 -14.08 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.07 -1.32 4.91 -104.63 -0.51 -1.83 16 25 C -0.11 -1.94 9.67 -39.58 -0.38 -2.32 16 26 C -0.12 -1.92 10.05 -39.58 -0.40 -2.31 16 27 C -0.14 -2.00 10.05 -39.58 -0.40 -2.39 16 28 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 29 C -0.11 -1.84 9.33 -39.58 -0.37 -2.21 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.53 6.65 -51.93 -0.35 0.19 16 36 H 0.07 0.52 7.68 -51.93 -0.40 0.13 16 37 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.39 4.73 5.82 -40.82 -0.24 4.49 16 43 H 0.40 6.68 8.62 -40.82 -0.35 6.32 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 48 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 49 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 50 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 51 H 0.11 1.85 7.71 -52.49 -0.40 1.45 16 LS Contribution 407.22 15.07 6.14 6.14 Total: -1.00 -31.29 407.22 -11.48 -42.77 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -8.78 Total: 11.62 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -4.11 Total: -14.32 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.21 Total: -49.25 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.29 -11.48 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133679979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.797 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds