Wall clock time and date at job start Tue Mar 31 2020 15:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.05348 * 2 1 4 4 C 1.54087 * 110.16145 * 238.53589 * 2 1 3 5 5 C 1.54273 * 106.62065 * 240.87702 * 4 2 1 6 6 C 1.54893 * 104.19459 * 336.27913 * 5 4 2 7 7 C 1.54266 * 110.03564 * 121.41543 * 2 1 3 8 8 H 1.08999 * 110.48089 * 24.08553 * 7 2 1 9 9 N 1.46496 * 110.48624 * 261.57537 * 7 2 1 10 10 C 1.34782 * 119.99934 * 156.84001 * 9 7 2 11 11 O 1.21583 * 119.99788 * 359.97438 * 10 9 7 12 12 N 1.34769 * 120.00001 * 180.02562 * 10 9 7 13 13 C 1.46506 * 120.00066 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46754 * 35.00287 * 13 12 10 15 15 C 1.53000 * 109.47190 * 154.99828 * 13 12 10 16 16 C 1.50696 * 109.47311 * 295.00288 * 15 13 12 17 17 H 1.08006 * 120.00218 * 359.97438 * 16 15 13 18 18 C 1.37870 * 120.00323 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00244 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46982 * 60.00274 * 20 18 16 22 22 H 1.48499 * 109.46912 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47007 * 300.00140 * 20 18 16 24 24 C 1.50693 * 109.47442 * 275.00062 * 13 12 10 25 25 C 1.38233 * 120.00207 * 139.99344 * 24 13 12 26 26 C 1.38234 * 120.00037 * 179.72405 * 25 24 13 27 27 C 1.38234 * 120.00240 * 0.26327 * 26 25 24 28 28 C 1.38238 * 119.99693 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00082 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47339 * 298.58059 * 1 2 3 31 31 H 1.09000 * 109.47655 * 58.58350 * 1 2 3 32 32 H 1.09006 * 109.46979 * 178.57988 * 1 2 3 33 33 H 1.09004 * 109.47336 * 181.41950 * 3 2 1 34 34 H 1.09001 * 109.47582 * 301.41875 * 3 2 1 35 35 H 1.08995 * 109.47437 * 61.41697 * 3 2 1 36 36 H 1.09000 * 110.11476 * 121.53759 * 4 2 1 37 37 H 1.09002 * 109.96968 * 0.13413 * 4 2 1 38 38 H 1.08996 * 110.48875 * 217.60093 * 5 4 2 39 39 H 1.09004 * 110.59730 * 95.01063 * 5 4 2 40 40 H 1.09001 * 110.75291 * 279.62949 * 6 5 4 41 41 H 1.09000 * 110.75652 * 156.25737 * 6 5 4 42 42 H 0.96996 * 120.00537 * 336.83852 * 9 7 2 43 43 H 0.97003 * 120.00387 * 0.02562 * 12 10 9 44 44 H 1.08997 * 109.46769 * 55.00230 * 15 13 12 45 45 H 1.08999 * 109.47207 * 174.99956 * 15 13 12 46 46 H 0.97002 * 119.99857 * 179.97438 * 19 18 16 47 47 H 1.08002 * 120.00157 * 0.02562 * 25 24 13 48 48 H 1.07999 * 120.00009 * 180.28389 * 26 25 24 49 49 H 1.07997 * 120.00460 * 180.02562 * 27 26 25 50 50 H 1.08001 * 119.99643 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00025 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0611 -0.7550 -1.2338 5 6 2.8885 -1.9433 -0.7015 6 6 3.3132 -1.5032 0.7215 7 6 2.0585 -0.7554 1.2368 8 1 1.3134 -1.4643 1.5980 9 7 2.4230 0.1879 2.2967 10 6 2.4568 -0.2210 3.5806 11 8 2.1843 -1.3728 3.8590 12 7 2.7917 0.6469 4.5556 13 6 2.8278 0.2025 5.9512 14 1 3.1743 -0.8300 5.9948 15 6 3.7833 1.0949 6.7460 16 6 5.1878 0.9101 6.2322 17 1 5.3800 0.2244 5.4202 18 6 6.2276 1.6164 6.7986 19 7 5.9938 2.4511 7.7877 20 14 7.9688 1.3867 6.1621 21 1 8.0237 1.7581 4.7254 22 1 8.8961 2.2530 6.9335 23 1 8.3710 -0.0338 6.3220 24 6 1.4452 0.2940 6.5436 25 6 0.9881 -0.7001 7.3884 26 6 -0.2781 -0.6133 7.9362 27 6 -1.0892 0.4648 7.6351 28 6 -0.6338 1.4564 6.7864 29 6 0.6323 1.3697 6.2385 30 1 -0.3634 0.4916 0.9024 31 1 -0.3634 0.5357 -0.8770 32 1 -0.3633 -1.0274 -0.0255 33 1 3.1443 1.4263 -0.0255 34 1 1.6760 1.9623 -0.8770 35 1 1.7174 1.9471 0.9024 36 1 2.6928 -0.0983 -1.8319 37 1 1.2277 -1.1197 -1.8343 38 1 3.7655 -2.1083 -1.3274 39 1 2.2784 -2.8454 -0.6557 40 1 4.1718 -0.8331 0.6785 41 1 3.5296 -2.3704 1.3456 42 1 2.6401 1.1068 2.0746 43 1 3.0080 1.5661 4.3336 44 1 3.4880 2.1377 6.6294 45 1 3.7432 0.8217 7.8004 46 1 6.7254 2.9477 8.1864 47 1 1.6219 -1.5421 7.6242 48 1 -0.6335 -1.3877 8.5999 49 1 -2.0782 0.5329 8.0634 50 1 -1.2677 2.2986 6.5508 51 1 0.9879 2.1442 5.5751 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133679979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:52 Heat of formation + Delta-G solvation = -44.453708 kcal Electronic energy + Delta-G solvation = -29120.021624 eV Core-core repulsion = 25403.355289 eV Total energy + Delta-G solvation = -3716.666334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.49584 -40.36089 -39.35255 -36.77030 -34.84203 -34.59404 -33.14880 -32.28538 -31.66989 -30.53272 -28.50178 -28.24466 -26.61184 -25.27945 -23.78574 -23.39266 -22.49572 -21.42936 -21.20641 -19.99646 -19.12139 -18.56401 -17.72580 -17.30933 -16.61388 -16.42503 -16.23302 -16.16641 -15.75445 -15.46012 -15.08574 -14.84378 -14.45220 -14.26452 -14.25550 -14.18029 -14.05702 -13.80728 -13.66300 -13.44869 -13.10956 -12.93074 -12.79382 -12.64510 -12.49124 -12.44265 -12.14078 -11.98584 -11.87870 -11.83855 -11.57574 -11.50081 -11.42205 -11.33357 -11.31290 -11.18883 -10.58295 -10.18289 -9.75631 -9.64980 -9.48869 -8.19897 -6.29795 0.52551 0.57085 1.38808 1.40921 1.48790 1.87580 2.29035 2.39758 2.96757 3.13396 3.42642 3.52389 3.68733 3.88381 4.02094 4.04770 4.21681 4.31992 4.32752 4.33778 4.40363 4.42784 4.46573 4.53421 4.66527 4.72745 4.77088 4.79104 4.80264 4.91050 4.98011 5.01690 5.09721 5.13829 5.14061 5.20365 5.20944 5.30310 5.33229 5.36943 5.37662 5.44132 5.52937 5.62104 5.63804 5.65547 5.72384 5.78558 5.91797 6.15568 6.17806 6.22473 6.82114 7.21576 7.39036 7.72926 8.90630 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007774 B = 0.004537 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.048252 B = 6169.968792 C = 8834.718455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.147 4.147 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.139 4.139 7 C 0.166 3.834 8 H 0.066 0.934 9 N -0.730 5.730 10 C 0.700 3.300 11 O -0.638 6.638 12 N -0.713 5.713 13 C 0.220 3.780 14 H 0.053 0.947 15 C 0.039 3.961 16 C -0.528 4.528 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.925 5.925 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.277 1.277 24 C -0.096 4.096 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.120 4.120 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.407 0.593 43 H 0.403 0.597 44 H 0.013 0.987 45 H 0.004 0.996 46 H 0.264 0.736 47 H 0.111 0.889 48 H 0.143 0.857 49 H 0.151 0.849 50 H 0.146 0.854 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 -1.259 -16.126 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 C -0.204 4.204 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.178 4.178 7 C 0.060 3.940 8 H 0.084 0.916 9 N -0.388 5.388 10 C 0.400 3.600 11 O -0.520 6.520 12 N -0.366 5.366 13 C 0.114 3.886 14 H 0.071 0.929 15 C 0.002 3.998 16 C -0.566 4.566 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.565 5.565 20 Si 0.781 3.219 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.203 1.203 24 C -0.098 4.098 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.148 4.148 28 C -0.143 4.143 29 C -0.138 4.138 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.246 0.754 43 H 0.238 0.762 44 H 0.031 0.969 45 H 0.022 0.978 46 H 0.073 0.927 47 H 0.129 0.871 48 H 0.161 0.839 49 H 0.169 0.831 50 H 0.164 0.836 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.257 -2.151 -15.755 20.702 hybrid contribution 1.593 0.523 0.256 1.696 sum -11.664 -1.628 -15.499 19.465 Atomic orbital electron populations 1.21891 0.93440 1.01961 1.02059 1.21409 0.96185 0.96059 0.93316 1.21935 1.01295 0.94518 1.02682 1.22281 0.99927 0.96385 0.95904 1.22265 1.00348 0.98501 0.94391 1.22893 0.97980 0.99562 0.97368 1.21764 0.96034 0.90229 0.85939 0.91604 1.45313 1.74463 1.15209 1.03808 1.16177 0.77780 0.84393 0.81623 1.90825 1.58595 1.19398 1.83226 1.44927 1.72683 1.13468 1.05519 1.19549 0.91094 0.98302 0.79684 0.92872 1.19123 0.92680 0.93998 0.94034 1.21333 0.93064 1.24216 1.17968 0.93134 1.25749 1.02953 0.94835 0.95076 1.70063 1.33463 1.27638 1.25345 0.85657 0.79599 0.77936 0.78755 1.19138 1.20718 1.20259 1.20492 0.96208 0.95476 0.97596 1.21170 0.97268 0.98498 0.98331 1.21378 0.93422 0.99382 0.99990 1.21459 1.00760 0.94032 0.98515 1.21430 0.95499 0.99845 0.97486 1.21039 0.94841 0.97407 1.00528 0.93810 0.90528 0.92682 0.92125 0.90217 0.92547 0.90117 0.90048 0.90313 0.91442 0.91434 0.93873 0.75409 0.76247 0.96904 0.97763 0.92711 0.87123 0.83893 0.83091 0.83619 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.16 71.98 0.59 -1.64 16 2 C -0.07 -1.20 0.92 -51.39 -0.05 -1.25 16 3 C -0.15 -2.21 7.07 71.98 0.51 -1.70 16 4 C -0.11 -1.53 6.12 31.39 0.19 -1.34 16 5 C -0.12 -2.06 6.83 31.67 0.22 -1.84 16 6 C -0.14 -3.48 6.58 31.89 0.21 -3.27 16 7 C 0.17 4.25 2.57 46.07 0.12 4.37 16 8 H 0.07 2.04 7.32 -2.39 -0.02 2.02 16 9 N -0.73 -21.03 4.94 -452.69 -2.24 -23.27 16 10 C 0.70 26.97 8.52 179.06 1.53 28.49 16 11 O -0.64 -29.82 15.68 -3.98 -0.06 -29.88 16 12 N -0.71 -27.61 4.03 -461.42 -1.86 -29.47 16 13 C 0.22 9.75 2.12 44.24 0.09 9.85 16 14 H 0.05 2.67 7.44 -2.39 -0.02 2.65 16 15 C 0.04 2.01 4.50 29.85 0.13 2.14 16 16 C -0.53 -29.14 8.84 25.60 0.23 -28.92 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 18 C 0.01 0.70 5.46 84.65 0.46 1.16 16 19 N -0.93 -54.33 13.29 21.44 0.28 -54.05 16 20 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 C -0.10 -3.83 4.91 -19.87 -0.10 -3.93 16 25 C -0.13 -5.00 9.67 22.27 0.22 -4.79 16 26 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 27 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16 28 C -0.12 -3.54 10.05 22.27 0.22 -3.32 16 29 C -0.12 -4.14 9.33 22.27 0.21 -3.93 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.90 6.65 -2.39 -0.02 0.88 16 36 H 0.08 0.97 7.68 -2.39 -0.02 0.96 16 37 H 0.08 0.96 7.68 -2.39 -0.02 0.94 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.41 9.65 5.82 -92.71 -0.54 9.11 16 43 H 0.40 14.10 8.62 -92.71 -0.80 13.31 16 44 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 47 H 0.11 4.15 8.04 -2.91 -0.02 4.13 16 48 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 49 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 50 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 51 H 0.12 3.87 7.71 -2.91 -0.02 3.85 16 Total: -1.00 -70.73 407.22 2.95 -67.78 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -0.43 Total: 39.63 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 5.22 Total: -16.63 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -3.81 Total: -106.79 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.06 Total: -29.88 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.73 2.95 -67.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133679979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.328 kcal (2) G-P(sol) polarization free energy of solvation -70.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds