Wall clock time and date at job start Tue Mar 31 2020 15:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 110.05954 * 2 1 4 4 C 1.54273 * 110.03135 * 238.58896 * 2 1 3 5 5 C 1.54899 * 104.19167 * 264.32550 * 4 2 1 6 6 C 1.54885 * 102.74817 * 322.05873 * 5 4 2 7 7 C 1.53875 * 110.03270 * 121.42160 * 2 1 3 8 8 H 1.08997 * 110.03273 * 238.61454 * 7 2 1 9 9 N 1.46495 * 110.03184 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00192 * 204.99965 * 9 7 2 11 11 O 1.21579 * 119.99849 * 0.02562 * 10 9 7 12 12 N 1.34782 * 119.99743 * 179.97438 * 10 9 7 13 13 C 1.46503 * 119.99434 * 174.98428 * 12 10 9 14 14 H 1.09001 * 109.47292 * 326.45311 * 13 12 10 15 15 C 1.52994 * 109.47101 * 206.44886 * 13 12 10 16 16 C 1.50699 * 109.47323 * 65.32882 * 15 13 12 17 17 H 1.08007 * 119.99752 * 355.14081 * 16 15 13 18 18 C 1.37869 * 120.00434 * 175.13266 * 16 15 13 19 19 N 1.31518 * 119.99940 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46850 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47202 * 300.00222 * 20 18 16 23 23 H 1.48499 * 109.46928 * 60.00767 * 20 18 16 24 24 C 1.50703 * 109.47070 * 86.44983 * 13 12 10 25 25 C 1.38236 * 119.99724 * 39.72431 * 24 13 12 26 26 C 1.38238 * 119.99673 * 179.80816 * 25 24 13 27 27 C 1.38234 * 120.00051 * 0.42546 * 26 25 24 28 28 C 1.38238 * 120.00196 * 359.80623 * 27 26 25 29 29 C 1.38235 * 119.99952 * 219.99648 * 24 13 12 30 30 H 1.09001 * 109.47017 * 298.58520 * 1 2 3 31 31 H 1.09007 * 109.47242 * 58.57902 * 1 2 3 32 32 H 1.08992 * 109.47469 * 178.57685 * 1 2 3 33 33 H 1.09004 * 109.47324 * 181.41264 * 3 2 1 34 34 H 1.08993 * 109.47583 * 301.41856 * 3 2 1 35 35 H 1.09009 * 109.46531 * 61.42083 * 3 2 1 36 36 H 1.08997 * 110.48936 * 23.00155 * 4 2 1 37 37 H 1.09004 * 110.48381 * 145.65125 * 4 2 1 38 38 H 1.09001 * 110.75365 * 80.37509 * 5 4 2 39 39 H 1.08999 * 110.75264 * 203.74067 * 5 4 2 40 40 H 1.09002 * 110.48521 * 279.26115 * 6 5 4 41 41 H 1.08995 * 110.48424 * 156.62622 * 6 5 4 42 42 H 0.97009 * 120.00010 * 24.99818 * 9 7 2 43 43 H 0.96991 * 120.00059 * 354.98879 * 12 10 9 44 44 H 1.09004 * 109.47256 * 305.33378 * 15 13 12 45 45 H 1.09001 * 109.47393 * 185.33321 * 15 13 12 46 46 H 0.97005 * 120.00169 * 179.97438 * 19 18 16 47 47 H 1.07996 * 120.00240 * 359.97438 * 25 24 13 48 48 H 1.07998 * 119.99699 * 180.20834 * 26 25 24 49 49 H 1.08000 * 119.99944 * 179.79027 * 27 26 25 50 50 H 1.07997 * 120.00141 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.00325 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 2.3280 -2.1902 -0.7193 6 6 2.8873 -1.9407 0.7033 7 6 2.0570 -0.7537 1.2337 8 1 2.6860 -0.0953 1.8328 9 7 0.9359 -1.2447 2.0386 10 6 1.1012 -1.4718 3.3568 11 8 2.1807 -1.2687 3.8779 12 7 0.0695 -1.9231 4.0974 13 6 0.2765 -2.2745 5.5045 14 1 1.2792 -2.6821 5.6335 15 6 -0.7574 -3.3203 5.9264 16 6 -0.5190 -4.5984 5.1644 17 1 0.2379 -4.6351 4.3948 18 6 -1.2670 -5.7209 5.4497 19 7 -2.1889 -5.6762 6.3865 20 14 -0.9709 -7.3054 4.5055 21 1 -1.8981 -8.3557 4.9980 22 1 -1.2116 -7.0719 3.0589 23 1 0.4320 -7.7479 4.7089 24 6 0.1216 -1.0422 6.3580 25 6 -0.8685 -0.1216 6.0696 26 6 -1.0130 1.0068 6.8549 27 6 -0.1620 1.2190 7.9233 28 6 0.8312 0.3009 8.2089 29 6 0.9732 -0.8296 7.4260 30 1 -0.3633 0.4917 0.9024 31 1 -0.3634 0.5358 -0.8770 32 1 -0.3634 -1.0272 -0.0255 33 1 3.1444 1.4262 -0.0253 34 1 1.6762 1.9623 -0.8769 35 1 1.7175 1.9471 0.9026 36 1 1.3061 -0.7695 -2.0256 37 1 2.9811 -0.3000 -1.5967 38 1 1.4029 -2.7651 -0.6754 39 1 3.0674 -2.6931 -1.3425 40 1 3.9439 -1.6768 0.6570 41 1 2.7400 -2.8198 1.3307 42 1 0.0744 -1.4064 1.6229 43 1 -0.8099 -2.0153 3.6988 44 1 -1.7591 -2.9493 5.7091 45 1 -0.6650 -3.5120 6.9955 46 1 -2.7154 -6.4658 6.5870 47 1 -1.5307 -0.2853 5.2323 48 1 -1.7887 1.7243 6.6316 49 1 -0.2728 2.1023 8.5348 50 1 1.4964 0.4669 9.0433 51 1 1.7493 -1.5468 7.6489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133680172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:00 Heat of formation + Delta-G solvation = -25.201567 kcal Electronic energy + Delta-G solvation = -29186.816591 eV Core-core repulsion = 25470.985092 eV Total energy + Delta-G solvation = -3715.831499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -40.30523 -39.14043 -38.07006 -35.12677 -33.34538 -32.65226 -32.31560 -30.85905 -30.37675 -28.78580 -27.97801 -27.03077 -24.91531 -24.31623 -22.24289 -21.91812 -21.33320 -20.16245 -19.71240 -18.92430 -17.77382 -16.85656 -16.25378 -16.08909 -15.46672 -15.09841 -14.82480 -14.54397 -14.29782 -14.20910 -13.88356 -13.64178 -13.42427 -13.15855 -13.07976 -12.93262 -12.70628 -12.48101 -12.29585 -12.06816 -11.90880 -11.55189 -11.45108 -11.18824 -11.08791 -10.91229 -10.86755 -10.69258 -10.68442 -10.65339 -10.59839 -10.57719 -10.38121 -9.75031 -9.57379 -9.27073 -8.75254 -8.48140 -8.42718 -8.21425 -8.10816 -6.06722 -4.09712 1.84786 1.86740 3.24028 3.29344 3.34492 3.37437 3.78840 4.27212 4.33381 4.41434 4.50418 4.64185 4.87532 5.10673 5.19555 5.22145 5.26913 5.29957 5.31766 5.33295 5.43270 5.48234 5.52983 5.60573 5.62209 5.65717 5.72021 5.80245 5.87088 5.90809 5.97244 6.00321 6.03706 6.08693 6.15176 6.23755 6.25958 6.33538 6.42551 6.49283 6.64304 6.90325 6.91568 6.93510 7.03850 7.18035 7.41655 7.47176 7.56238 7.73511 7.90385 8.29203 8.61554 8.96080 9.20603 9.54941 11.03848 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007640 B = 0.004713 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.875685 B = 5939.519028 C = 8764.980850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.136 4.136 7 C 0.171 3.829 8 H 0.088 0.912 9 N -0.747 5.747 10 C 0.702 3.298 11 O -0.598 6.598 12 N -0.719 5.719 13 C 0.203 3.797 14 H 0.086 0.914 15 C 0.024 3.976 16 C -0.518 4.518 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.288 1.288 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.068 4.068 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.136 4.136 28 C -0.123 4.123 29 C -0.108 4.108 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.394 0.606 43 H 0.394 0.606 44 H 0.020 0.980 45 H 0.038 0.962 46 H 0.262 0.738 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.115 0.885 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 13.683 -11.119 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.195 4.195 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.175 4.175 7 C 0.065 3.935 8 H 0.107 0.893 9 N -0.405 5.405 10 C 0.402 3.598 11 O -0.477 6.477 12 N -0.371 5.371 13 C 0.098 3.902 14 H 0.104 0.896 15 C -0.014 4.014 16 C -0.556 4.556 17 H 0.075 0.925 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.213 1.213 22 H -0.204 1.204 23 H -0.202 1.202 24 C -0.069 4.069 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.155 4.155 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.231 0.769 43 H 0.228 0.772 44 H 0.038 0.962 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.133 0.867 48 H 0.131 0.869 49 H 0.130 0.870 50 H 0.133 0.867 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.330 13.727 -10.522 18.098 hybrid contribution -0.778 -1.115 -0.791 1.573 sum 4.552 12.612 -11.313 17.543 Atomic orbital electron populations 1.21867 0.94333 1.01718 1.02147 1.21437 0.96014 0.95581 0.94638 1.21890 1.00935 0.94868 1.01819 1.22500 1.00780 0.95466 0.96461 1.22505 1.00940 0.96429 0.96378 1.22806 0.99281 0.99195 0.96176 1.21354 0.87274 0.94471 0.90430 0.89350 1.45494 1.14805 1.72768 1.07430 1.16051 0.84663 0.78048 0.81033 1.90861 1.25828 1.59170 1.71866 1.45135 1.10856 1.69325 1.11770 1.20103 1.02607 0.90715 0.76765 0.89640 1.19397 0.92487 0.91562 0.97922 1.21094 1.19572 0.95163 1.19760 0.92466 1.24980 0.95162 0.98803 0.95173 1.69950 1.22433 1.29720 1.31062 0.86666 0.78113 0.83131 0.80125 1.21339 1.20356 1.20239 1.20608 0.94117 0.96441 0.95783 1.20872 0.97987 0.94169 0.99465 1.21022 0.99444 0.97821 0.96137 1.20971 0.96731 0.99442 0.98317 1.21032 0.98553 0.94906 0.99639 1.21016 0.98944 0.97316 0.95348 0.91918 0.92383 0.92263 0.92405 0.92551 0.92456 0.91554 0.91414 0.91509 0.91730 0.91203 0.90832 0.76884 0.77211 0.96151 0.94414 0.92858 0.86747 0.86894 0.86955 0.86696 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 7.03 37.15 0.26 -1.00 16 2 C -0.08 -0.72 0.94 -153.39 -0.14 -0.87 16 3 C -0.14 -1.21 8.16 37.16 0.30 -0.90 16 4 C -0.11 -0.98 5.90 -25.06 -0.15 -1.13 16 5 C -0.12 -1.25 6.91 -24.74 -0.17 -1.42 16 6 C -0.14 -1.68 6.54 -25.08 -0.16 -1.84 16 7 C 0.17 2.16 2.88 -66.82 -0.19 1.96 16 8 H 0.09 1.30 7.09 -51.93 -0.37 0.93 16 9 N -0.75 -10.50 4.47 -57.59 -0.26 -10.75 16 10 C 0.70 12.85 8.53 -86.91 -0.74 12.11 16 11 O -0.60 -13.13 15.69 5.30 0.08 -13.05 16 12 N -0.72 -13.17 4.02 -59.81 -0.24 -13.41 16 13 C 0.20 4.22 2.10 -69.08 -0.14 4.08 16 14 H 0.09 1.97 7.47 -51.93 -0.39 1.58 16 15 C 0.02 0.57 4.50 -27.89 -0.13 0.45 16 16 C -0.52 -13.75 8.84 -34.44 -0.30 -14.05 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 20 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.07 -1.30 4.93 -104.62 -0.52 -1.82 16 25 C -0.11 -1.84 9.33 -39.58 -0.37 -2.21 16 26 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 27 C -0.14 -2.01 10.05 -39.58 -0.40 -2.41 16 28 C -0.12 -1.93 10.05 -39.58 -0.40 -2.32 16 29 C -0.11 -1.94 9.67 -39.58 -0.38 -2.33 16 30 H 0.06 0.59 7.72 -51.93 -0.40 0.19 16 31 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 32 H 0.06 0.52 6.93 -51.93 -0.36 0.16 16 33 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.07 0.51 7.84 -51.93 -0.41 0.11 16 37 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.10 8.04 -51.93 -0.42 0.69 16 42 H 0.39 4.74 5.84 -40.82 -0.24 4.51 16 43 H 0.39 6.58 8.64 -40.82 -0.35 6.23 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.11 1.85 7.71 -52.49 -0.40 1.44 16 48 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 49 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 51 H 0.12 2.08 8.04 -52.49 -0.42 1.66 16 LS Contribution 406.81 15.07 6.13 6.13 Total: -1.00 -31.25 406.81 -11.48 -42.73 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -8.78 Total: 11.66 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -4.13 Total: -14.47 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.24 Total: -49.13 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.25 -11.48 -42.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133680172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.525 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds