Wall clock time and date at job start Tue Mar 31 2020 15:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 110.05954 * 2 1 4 4 C 1.54273 * 110.03135 * 238.58896 * 2 1 3 5 5 C 1.54899 * 104.19167 * 264.32550 * 4 2 1 6 6 C 1.54885 * 102.74817 * 322.05873 * 5 4 2 7 7 C 1.53875 * 110.03270 * 121.42160 * 2 1 3 8 8 H 1.08997 * 110.03273 * 238.61454 * 7 2 1 9 9 N 1.46495 * 110.03184 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00192 * 204.99965 * 9 7 2 11 11 O 1.21579 * 119.99849 * 0.02562 * 10 9 7 12 12 N 1.34782 * 119.99743 * 179.97438 * 10 9 7 13 13 C 1.46503 * 119.99434 * 174.98428 * 12 10 9 14 14 H 1.09001 * 109.47292 * 326.45311 * 13 12 10 15 15 C 1.52994 * 109.47101 * 206.44886 * 13 12 10 16 16 C 1.50699 * 109.47323 * 65.32882 * 15 13 12 17 17 H 1.08007 * 119.99752 * 355.14081 * 16 15 13 18 18 C 1.37869 * 120.00434 * 175.13266 * 16 15 13 19 19 N 1.31518 * 119.99940 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46850 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47202 * 300.00222 * 20 18 16 23 23 H 1.48499 * 109.46928 * 60.00767 * 20 18 16 24 24 C 1.50703 * 109.47070 * 86.44983 * 13 12 10 25 25 C 1.38236 * 119.99724 * 39.72431 * 24 13 12 26 26 C 1.38238 * 119.99673 * 179.80816 * 25 24 13 27 27 C 1.38234 * 120.00051 * 0.42546 * 26 25 24 28 28 C 1.38238 * 120.00196 * 359.80623 * 27 26 25 29 29 C 1.38235 * 119.99952 * 219.99648 * 24 13 12 30 30 H 1.09001 * 109.47017 * 298.58520 * 1 2 3 31 31 H 1.09007 * 109.47242 * 58.57902 * 1 2 3 32 32 H 1.08992 * 109.47469 * 178.57685 * 1 2 3 33 33 H 1.09004 * 109.47324 * 181.41264 * 3 2 1 34 34 H 1.08993 * 109.47583 * 301.41856 * 3 2 1 35 35 H 1.09009 * 109.46531 * 61.42083 * 3 2 1 36 36 H 1.08997 * 110.48936 * 23.00155 * 4 2 1 37 37 H 1.09004 * 110.48381 * 145.65125 * 4 2 1 38 38 H 1.09001 * 110.75365 * 80.37509 * 5 4 2 39 39 H 1.08999 * 110.75264 * 203.74067 * 5 4 2 40 40 H 1.09002 * 110.48521 * 279.26115 * 6 5 4 41 41 H 1.08995 * 110.48424 * 156.62622 * 6 5 4 42 42 H 0.97009 * 120.00010 * 24.99818 * 9 7 2 43 43 H 0.96991 * 120.00059 * 354.98879 * 12 10 9 44 44 H 1.09004 * 109.47256 * 305.33378 * 15 13 12 45 45 H 1.09001 * 109.47393 * 185.33321 * 15 13 12 46 46 H 0.97005 * 120.00169 * 179.97438 * 19 18 16 47 47 H 1.07996 * 120.00240 * 359.97438 * 25 24 13 48 48 H 1.07998 * 119.99699 * 180.20834 * 26 25 24 49 49 H 1.08000 * 119.99944 * 179.79027 * 27 26 25 50 50 H 1.07997 * 120.00141 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.00325 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 2.3280 -2.1902 -0.7193 6 6 2.8873 -1.9407 0.7033 7 6 2.0570 -0.7537 1.2337 8 1 2.6860 -0.0953 1.8328 9 7 0.9359 -1.2447 2.0386 10 6 1.1012 -1.4718 3.3568 11 8 2.1807 -1.2687 3.8779 12 7 0.0695 -1.9231 4.0974 13 6 0.2765 -2.2745 5.5045 14 1 1.2792 -2.6821 5.6335 15 6 -0.7574 -3.3203 5.9264 16 6 -0.5190 -4.5984 5.1644 17 1 0.2379 -4.6351 4.3948 18 6 -1.2670 -5.7209 5.4497 19 7 -2.1889 -5.6762 6.3865 20 14 -0.9709 -7.3054 4.5055 21 1 -1.8981 -8.3557 4.9980 22 1 -1.2116 -7.0719 3.0589 23 1 0.4320 -7.7479 4.7089 24 6 0.1216 -1.0422 6.3580 25 6 -0.8685 -0.1216 6.0696 26 6 -1.0130 1.0068 6.8549 27 6 -0.1620 1.2190 7.9233 28 6 0.8312 0.3009 8.2089 29 6 0.9732 -0.8296 7.4260 30 1 -0.3633 0.4917 0.9024 31 1 -0.3634 0.5358 -0.8770 32 1 -0.3634 -1.0272 -0.0255 33 1 3.1444 1.4262 -0.0253 34 1 1.6762 1.9623 -0.8769 35 1 1.7175 1.9471 0.9026 36 1 1.3061 -0.7695 -2.0256 37 1 2.9811 -0.3000 -1.5967 38 1 1.4029 -2.7651 -0.6754 39 1 3.0674 -2.6931 -1.3425 40 1 3.9439 -1.6768 0.6570 41 1 2.7400 -2.8198 1.3307 42 1 0.0744 -1.4064 1.6229 43 1 -0.8099 -2.0153 3.6988 44 1 -1.7591 -2.9493 5.7091 45 1 -0.6650 -3.5120 6.9955 46 1 -2.7154 -6.4658 6.5870 47 1 -1.5307 -0.2853 5.2323 48 1 -1.7887 1.7243 6.6316 49 1 -0.2728 2.1023 8.5348 50 1 1.4964 0.4669 9.0433 51 1 1.7493 -1.5468 7.6489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133680172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:59 Heat of formation + Delta-G solvation = -41.464632 kcal Electronic energy + Delta-G solvation = -29187.521810 eV Core-core repulsion = 25470.985092 eV Total energy + Delta-G solvation = -3716.536718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.54861 -40.38162 -39.33529 -36.76267 -34.78947 -34.53468 -33.14717 -32.25673 -31.66509 -30.52521 -28.86416 -27.97096 -26.59321 -25.28430 -23.78536 -23.39649 -22.55177 -21.38640 -21.12435 -19.97935 -19.07387 -18.57517 -17.76906 -17.33952 -16.75755 -16.51055 -16.19016 -16.15066 -15.61313 -15.48038 -14.96347 -14.81820 -14.51109 -14.41301 -14.18220 -14.13266 -14.04559 -13.90320 -13.64030 -13.44548 -13.00611 -12.91924 -12.71235 -12.64157 -12.45775 -12.40532 -12.13013 -12.01952 -11.85878 -11.83566 -11.59730 -11.50648 -11.42950 -11.36168 -11.33254 -11.17052 -10.58202 -10.18556 -9.75271 -9.64267 -9.48577 -8.19795 -6.29661 0.53149 0.57442 1.38728 1.40764 1.48622 1.87604 2.30338 2.39680 2.97271 3.13536 3.44289 3.50982 3.66836 3.91456 4.02261 4.04789 4.21846 4.29547 4.32833 4.37639 4.40168 4.43840 4.45504 4.63133 4.66745 4.73225 4.77674 4.80052 4.82826 4.90769 4.96143 5.02656 5.06597 5.11185 5.14265 5.20963 5.21592 5.30418 5.31093 5.36182 5.42899 5.44878 5.51709 5.62372 5.64124 5.65940 5.74885 5.78655 5.92496 6.15989 6.18118 6.22639 6.82395 7.22248 7.39121 7.73552 8.90790 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007640 B = 0.004713 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.875685 B = 5939.519028 C = 8764.980850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.136 4.136 4 C -0.106 4.106 5 C -0.119 4.119 6 C -0.138 4.138 7 C 0.165 3.835 8 H 0.064 0.936 9 N -0.729 5.729 10 C 0.700 3.300 11 O -0.638 6.638 12 N -0.714 5.714 13 C 0.221 3.779 14 H 0.053 0.947 15 C 0.039 3.961 16 C -0.527 4.527 17 H 0.051 0.949 18 C 0.012 3.988 19 N -0.926 5.926 20 Si 0.955 3.045 21 H -0.282 1.282 22 H -0.266 1.266 23 H -0.277 1.277 24 C -0.095 4.095 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.124 4.124 29 C -0.134 4.134 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.406 0.594 43 H 0.402 0.598 44 H 0.011 0.989 45 H 0.006 0.994 46 H 0.264 0.736 47 H 0.119 0.881 48 H 0.146 0.854 49 H 0.151 0.849 50 H 0.143 0.857 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.872 15.355 -13.052 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.070 4.070 3 C -0.193 4.193 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.177 4.177 7 C 0.060 3.940 8 H 0.082 0.918 9 N -0.387 5.387 10 C 0.400 3.600 11 O -0.520 6.520 12 N -0.367 5.367 13 C 0.115 3.885 14 H 0.071 0.929 15 C 0.001 3.999 16 C -0.565 4.565 17 H 0.070 0.930 18 C -0.187 4.187 19 N -0.566 5.566 20 Si 0.781 3.219 21 H -0.208 1.208 22 H -0.191 1.191 23 H -0.203 1.203 24 C -0.097 4.097 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.142 4.142 29 C -0.153 4.153 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.245 0.755 43 H 0.237 0.763 44 H 0.029 0.971 45 H 0.025 0.975 46 H 0.073 0.927 47 H 0.137 0.863 48 H 0.164 0.836 49 H 0.169 0.831 50 H 0.161 0.839 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.703 15.408 -12.504 20.393 hybrid contribution -0.555 -1.573 -0.131 1.673 sum 4.148 13.836 -12.635 19.191 Atomic orbital electron populations 1.21876 0.93542 1.01982 1.02710 1.21421 0.96624 0.95747 0.93244 1.21881 1.01090 0.94214 1.02134 1.22483 1.01870 0.93897 0.96099 1.22478 1.00893 0.97715 0.94612 1.22784 0.99809 0.97604 0.97483 1.21543 0.86717 0.94583 0.91181 0.91811 1.45405 1.15911 1.71534 1.05879 1.16184 0.83843 0.77840 0.82154 1.90826 1.27309 1.60885 1.72967 1.44921 1.11362 1.69341 1.11062 1.19552 0.99363 0.91107 0.78520 0.92913 1.19133 0.92960 0.92053 0.95734 1.21340 1.19178 0.96323 1.19691 0.93024 1.25760 0.94868 1.02049 0.96017 1.70066 1.23365 1.30694 1.32453 0.85655 0.77824 0.79139 0.79315 1.20761 1.19081 1.20260 1.20495 0.96118 0.96533 0.96544 1.21035 0.97691 0.94753 1.00334 1.21429 1.00022 0.97317 0.95505 1.21455 0.95320 1.00038 0.97994 1.21377 0.99216 0.93870 0.99731 1.21167 0.99244 0.98724 0.96152 0.92829 0.90314 0.92196 0.92287 0.90506 0.93721 0.89682 0.90256 0.91897 0.90475 0.90771 0.94157 0.75457 0.76269 0.97111 0.97549 0.92730 0.86251 0.83610 0.83109 0.83928 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.03 71.98 0.51 -1.71 16 2 C -0.07 -1.21 0.94 -51.46 -0.05 -1.26 16 3 C -0.14 -2.13 8.16 71.98 0.59 -1.54 16 4 C -0.11 -1.52 5.90 31.67 0.19 -1.33 16 5 C -0.12 -2.19 6.91 31.89 0.22 -1.97 16 6 C -0.14 -3.46 6.54 31.67 0.21 -3.25 16 7 C 0.17 4.21 2.88 45.72 0.13 4.34 16 8 H 0.06 1.95 7.09 -2.39 -0.02 1.94 16 9 N -0.73 -20.95 4.47 -454.37 -2.03 -22.98 16 10 C 0.70 26.84 8.53 179.05 1.53 28.37 16 11 O -0.64 -29.67 15.69 -3.97 -0.06 -29.73 16 12 N -0.71 -27.49 4.02 -461.41 -1.85 -29.35 16 13 C 0.22 9.79 2.10 44.24 0.09 9.88 16 14 H 0.05 2.65 7.47 -2.39 -0.02 2.63 16 15 C 0.04 1.98 4.50 29.85 0.13 2.12 16 16 C -0.53 -29.06 8.84 25.60 0.23 -28.83 16 17 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 18 C 0.01 0.65 5.46 84.65 0.46 1.12 16 19 N -0.93 -54.52 13.29 21.44 0.28 -54.23 16 20 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 C -0.10 -3.81 4.93 -19.86 -0.10 -3.91 16 25 C -0.12 -4.15 9.33 22.27 0.21 -3.94 16 26 C -0.12 -3.56 10.05 22.27 0.22 -3.34 16 27 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 28 C -0.12 -3.75 10.05 22.27 0.22 -3.52 16 29 C -0.13 -5.04 9.67 22.27 0.22 -4.83 16 30 H 0.05 0.93 7.72 -2.39 -0.02 0.91 16 31 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 0.92 6.93 -2.39 -0.02 0.90 16 33 H 0.06 0.91 8.12 -2.38 -0.02 0.89 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.08 0.97 7.84 -2.39 -0.02 0.95 16 37 H 0.08 1.00 7.84 -2.38 -0.02 0.98 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.04 1.27 8.04 -2.39 -0.02 1.25 16 42 H 0.41 9.70 5.84 -92.70 -0.54 9.16 16 43 H 0.40 13.93 8.64 -92.71 -0.80 13.13 16 44 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 47 H 0.12 3.87 7.71 -2.91 -0.02 3.85 16 48 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 49 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 50 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 51 H 0.11 4.16 8.04 -2.91 -0.02 4.14 16 Total: -1.00 -70.75 406.81 3.16 -67.59 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -0.43 Total: 39.68 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 5.23 Total: -16.87 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -3.60 Total: -106.56 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.06 Total: -29.73 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.75 3.16 -67.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133680172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.125 kcal (2) G-P(sol) polarization free energy of solvation -70.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds