Wall clock time and date at job start Tue Mar 31 2020 15:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.05598 * 2 1 4 4 C 1.54079 * 110.16260 * 238.53272 * 2 1 3 5 5 C 1.54268 * 106.62343 * 240.88146 * 4 2 1 6 6 C 1.54891 * 104.19329 * 336.27938 * 5 4 2 7 7 C 1.54262 * 110.02924 * 121.41579 * 2 1 3 8 8 H 1.09000 * 110.48792 * 24.08686 * 7 2 1 9 9 N 1.46500 * 110.49066 * 261.57437 * 7 2 1 10 10 C 1.34776 * 120.00508 * 156.84397 * 9 7 2 11 11 O 1.21590 * 119.99488 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00371 * 180.02562 * 10 9 7 13 13 C 1.46497 * 120.00444 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.46581 * 324.99878 * 13 12 10 15 15 C 1.52997 * 109.47195 * 204.99889 * 13 12 10 16 16 C 1.50701 * 109.47212 * 64.99546 * 15 13 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 C 1.50699 * 109.47310 * 84.99467 * 13 12 10 25 25 C 1.38232 * 119.99901 * 39.72716 * 24 13 12 26 26 C 1.38239 * 119.99978 * 179.76232 * 25 24 13 27 27 C 1.38234 * 120.00025 * 0.49100 * 26 25 24 28 28 C 1.38238 * 119.99665 * 359.79090 * 27 26 25 29 29 C 1.38233 * 120.00314 * 359.95285 * 28 27 26 30 30 H 1.09004 * 109.47511 * 298.58116 * 1 2 3 31 31 H 1.09004 * 109.47128 * 58.58401 * 1 2 3 32 32 H 1.09001 * 109.47165 * 178.57999 * 1 2 3 33 33 H 1.08995 * 109.47261 * 181.41195 * 3 2 1 34 34 H 1.08994 * 109.47299 * 301.41900 * 3 2 1 35 35 H 1.09005 * 109.46733 * 61.41512 * 3 2 1 36 36 H 1.08992 * 110.11599 * 121.53856 * 4 2 1 37 37 H 1.09005 * 109.96981 * 0.14069 * 4 2 1 38 38 H 1.08993 * 110.48780 * 217.59960 * 5 4 2 39 39 H 1.09007 * 110.59926 * 95.01361 * 5 4 2 40 40 H 1.08998 * 110.75685 * 279.62633 * 6 5 4 41 41 H 1.09000 * 110.75408 * 156.25653 * 6 5 4 42 42 H 0.97001 * 119.99656 * 336.84295 * 9 7 2 43 43 H 0.97001 * 119.99794 * 359.97438 * 12 10 9 44 44 H 1.09002 * 109.47153 * 304.99547 * 15 13 12 45 45 H 1.09001 * 109.46832 * 184.99738 * 15 13 12 46 46 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 47 47 H 1.08003 * 120.00329 * 0.02562 * 25 24 13 48 48 H 1.07999 * 119.99665 * 180.25260 * 26 25 24 49 49 H 1.07990 * 120.00066 * 179.76241 * 27 26 25 50 50 H 1.07998 * 120.00025 * 179.97438 * 28 27 26 51 51 H 1.07998 * 120.00190 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0611 -0.7550 -1.2337 5 6 2.8884 -1.9433 -0.7014 6 6 3.3131 -1.5033 0.7216 7 6 2.0583 -0.7555 1.2369 8 1 1.3132 -1.4643 1.5980 9 7 2.4229 0.1878 2.2969 10 6 2.4566 -0.2211 3.5806 11 8 2.1840 -1.3729 3.8591 12 7 2.7915 0.6468 4.5558 13 6 2.8288 0.2022 5.9512 14 1 2.0418 -0.5331 6.1193 15 6 2.6113 1.4023 6.8749 16 6 1.2228 1.9504 6.6679 17 1 0.5615 1.4887 5.9497 18 6 0.7965 3.0408 7.3962 19 7 1.6016 3.6027 8.2711 20 14 -0.9248 3.7197 7.1402 21 1 -1.9240 2.6665 7.4530 22 1 -1.1358 4.8847 8.0366 23 1 -1.0830 4.1481 5.7271 24 6 4.1692 -0.4210 6.2443 25 6 5.3204 0.1386 5.7224 26 6 6.5505 -0.4302 5.9954 27 6 6.6284 -1.5643 6.7818 28 6 5.4766 -2.1272 7.2988 29 6 4.2470 -1.5555 7.0303 30 1 -0.3634 0.4916 0.9024 31 1 -0.3633 0.5357 -0.8770 32 1 -0.3633 -1.0274 -0.0255 33 1 3.1443 1.4262 -0.0253 34 1 1.6761 1.9622 -0.8769 35 1 1.7174 1.9471 0.9025 36 1 2.6928 -0.0984 -1.8317 37 1 1.2277 -1.1196 -1.8343 38 1 3.7654 -2.1083 -1.3273 39 1 2.2783 -2.8455 -0.6557 40 1 4.1717 -0.8332 0.6787 41 1 3.5294 -2.3705 1.3456 42 1 2.6400 1.1067 2.0747 43 1 3.0086 1.5657 4.3337 44 1 3.3449 2.1751 6.6453 45 1 2.7270 1.0881 7.9122 46 1 1.3018 4.3700 8.7832 47 1 5.2594 1.0226 5.1050 48 1 7.4503 0.0094 5.5909 49 1 7.5890 -2.0109 6.9918 50 1 5.5373 -3.0136 7.9129 51 1 3.3472 -1.9950 7.4346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133680369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:06 Heat of formation + Delta-G solvation = -27.993598 kcal Electronic energy + Delta-G solvation = -29128.094007 eV Core-core repulsion = 25412.141436 eV Total energy + Delta-G solvation = -3715.952571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.23218 -39.13978 -38.09421 -35.13564 -33.45890 -32.65136 -32.32234 -30.88028 -30.38438 -28.79007 -27.61216 -27.31024 -24.92645 -24.29848 -22.24306 -21.91741 -21.28292 -20.29434 -19.73582 -18.93732 -17.80002 -16.79198 -16.21408 -16.07160 -15.31640 -15.12696 -14.84361 -14.54925 -14.51577 -14.15466 -13.98888 -13.47351 -13.41694 -13.25960 -13.01692 -12.94066 -12.71836 -12.47637 -12.29606 -12.07457 -11.94774 -11.64686 -11.46107 -11.17772 -11.10193 -11.00185 -10.85824 -10.68888 -10.68160 -10.62419 -10.59630 -10.52655 -10.39953 -9.73541 -9.58132 -9.27324 -8.75767 -8.48729 -8.42916 -8.21975 -8.11181 -6.06834 -4.09761 1.83903 1.86028 3.23375 3.29371 3.34513 3.37594 3.78145 4.26222 4.34316 4.41500 4.51194 4.62808 4.87198 5.12582 5.15008 5.21115 5.24579 5.29824 5.31265 5.32752 5.42503 5.44871 5.53352 5.55937 5.60411 5.68080 5.74290 5.80211 5.82632 5.95332 5.96691 5.99824 6.02923 6.13219 6.15593 6.20194 6.27159 6.30700 6.41866 6.48725 6.64309 6.89282 6.90203 6.91121 7.03436 7.17588 7.41471 7.46478 7.55733 7.73319 7.90425 8.29179 8.61368 8.96032 9.20453 9.54847 11.03733 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007771 B = 0.004631 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3602.326722 B = 6044.731567 C = 8954.699035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C -0.147 4.147 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.135 4.135 7 C 0.172 3.828 8 H 0.092 0.908 9 N -0.747 5.747 10 C 0.703 3.297 11 O -0.599 6.599 12 N -0.718 5.718 13 C 0.203 3.797 14 H 0.086 0.914 15 C 0.024 3.976 16 C -0.518 4.518 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.069 4.069 25 C -0.106 4.106 26 C -0.126 4.126 27 C -0.136 4.136 28 C -0.123 4.123 29 C -0.108 4.108 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.394 0.606 43 H 0.395 0.605 44 H 0.024 0.976 45 H 0.034 0.966 46 H 0.262 0.738 47 H 0.115 0.885 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.115 0.885 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.836 -6.885 -16.025 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.174 4.174 7 C 0.066 3.934 8 H 0.110 0.890 9 N -0.405 5.405 10 C 0.403 3.597 11 O -0.478 6.478 12 N -0.370 5.370 13 C 0.098 3.902 14 H 0.104 0.896 15 C -0.013 4.013 16 C -0.556 4.556 17 H 0.075 0.925 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.070 4.070 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.154 4.154 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.231 0.769 43 H 0.229 0.771 44 H 0.042 0.958 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.133 0.867 48 H 0.131 0.869 49 H 0.131 0.869 50 H 0.133 0.867 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.570 -7.775 -15.597 18.296 hybrid contribution -0.690 1.375 -0.210 1.553 sum 4.880 -6.399 -15.807 17.738 Atomic orbital electron populations 1.21912 0.93891 1.01918 1.01966 1.21427 0.95953 0.95663 0.94637 1.21923 1.01030 0.95305 1.02158 1.22280 0.99427 0.96891 0.96491 1.22284 0.99550 0.97969 0.96328 1.22903 0.98148 1.00586 0.95749 1.21603 0.96197 0.90308 0.85329 0.89016 1.45394 1.75748 1.14248 1.05106 1.16044 0.78018 0.85097 0.80580 1.90860 1.56774 1.17772 1.82354 1.45129 1.72876 1.12753 1.06216 1.20090 0.91642 0.98702 0.79814 0.89638 1.19390 0.97414 0.90469 0.94071 1.21101 0.98723 1.13448 1.22322 0.92451 1.24979 0.97261 0.96788 0.95102 1.69950 1.35849 1.22676 1.24696 0.86664 0.84959 0.78454 0.77947 1.20230 1.21347 1.20355 1.20612 0.96488 0.94383 0.95563 1.20881 0.91971 0.99651 0.99960 1.21026 0.97304 0.96650 0.99430 1.20973 0.97891 0.97063 0.99508 1.21030 0.92736 0.99954 1.00419 1.21016 0.97625 0.95486 0.98514 0.92233 0.92640 0.92458 0.92233 0.92200 0.91911 0.91576 0.91597 0.91705 0.91541 0.91430 0.91093 0.76889 0.77130 0.95812 0.94752 0.92864 0.86717 0.86882 0.86946 0.86690 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.16 37.16 0.30 -1.08 16 2 C -0.08 -0.75 0.92 -153.28 -0.14 -0.89 16 3 C -0.15 -1.31 7.07 37.16 0.26 -1.05 16 4 C -0.11 -0.95 6.12 -25.50 -0.16 -1.11 16 5 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 6 C -0.13 -1.57 6.58 -24.74 -0.16 -1.73 16 7 C 0.17 2.18 2.57 -66.27 -0.17 2.01 16 8 H 0.09 1.38 7.32 -51.93 -0.38 1.00 16 9 N -0.75 -10.54 4.94 -57.05 -0.28 -10.82 16 10 C 0.70 12.92 8.52 -86.92 -0.74 12.18 16 11 O -0.60 -13.18 15.68 5.29 0.08 -13.10 16 12 N -0.72 -13.23 4.02 -59.82 -0.24 -13.47 16 13 C 0.20 4.21 2.12 -69.09 -0.15 4.07 16 14 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 15 C 0.02 0.58 4.50 -27.88 -0.13 0.45 16 16 C -0.52 -13.77 8.84 -34.44 -0.30 -14.07 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.07 -1.32 4.91 -104.63 -0.51 -1.83 16 25 C -0.11 -1.84 9.33 -39.58 -0.37 -2.20 16 26 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 27 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 28 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 29 C -0.11 -1.94 9.67 -39.58 -0.38 -2.32 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.61 6.65 -51.93 -0.35 0.26 16 36 H 0.07 0.51 7.68 -51.93 -0.40 0.11 16 37 H 0.07 0.51 7.68 -51.93 -0.40 0.11 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.39 4.72 5.82 -40.82 -0.24 4.49 16 43 H 0.40 6.67 8.62 -40.82 -0.35 6.32 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.11 1.86 7.71 -52.48 -0.40 1.45 16 48 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 49 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 51 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 LS Contribution 407.22 15.07 6.14 6.14 Total: -1.00 -31.25 407.22 -11.48 -42.73 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -8.78 Total: 11.69 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -4.11 Total: -14.35 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.21 Total: -49.22 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.25 -11.48 -42.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133680369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.732 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds