Wall clock time and date at job start Tue Mar 31 2020 15:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.05598 * 2 1 4 4 C 1.54079 * 110.16260 * 238.53272 * 2 1 3 5 5 C 1.54268 * 106.62343 * 240.88146 * 4 2 1 6 6 C 1.54891 * 104.19329 * 336.27938 * 5 4 2 7 7 C 1.54262 * 110.02924 * 121.41579 * 2 1 3 8 8 H 1.09000 * 110.48792 * 24.08686 * 7 2 1 9 9 N 1.46500 * 110.49066 * 261.57437 * 7 2 1 10 10 C 1.34776 * 120.00508 * 156.84397 * 9 7 2 11 11 O 1.21590 * 119.99488 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00371 * 180.02562 * 10 9 7 13 13 C 1.46497 * 120.00444 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.46581 * 324.99878 * 13 12 10 15 15 C 1.52997 * 109.47195 * 204.99889 * 13 12 10 16 16 C 1.50701 * 109.47212 * 64.99546 * 15 13 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 C 1.50699 * 109.47310 * 84.99467 * 13 12 10 25 25 C 1.38232 * 119.99901 * 39.72716 * 24 13 12 26 26 C 1.38239 * 119.99978 * 179.76232 * 25 24 13 27 27 C 1.38234 * 120.00025 * 0.49100 * 26 25 24 28 28 C 1.38238 * 119.99665 * 359.79090 * 27 26 25 29 29 C 1.38233 * 120.00314 * 359.95285 * 28 27 26 30 30 H 1.09004 * 109.47511 * 298.58116 * 1 2 3 31 31 H 1.09004 * 109.47128 * 58.58401 * 1 2 3 32 32 H 1.09001 * 109.47165 * 178.57999 * 1 2 3 33 33 H 1.08995 * 109.47261 * 181.41195 * 3 2 1 34 34 H 1.08994 * 109.47299 * 301.41900 * 3 2 1 35 35 H 1.09005 * 109.46733 * 61.41512 * 3 2 1 36 36 H 1.08992 * 110.11599 * 121.53856 * 4 2 1 37 37 H 1.09005 * 109.96981 * 0.14069 * 4 2 1 38 38 H 1.08993 * 110.48780 * 217.59960 * 5 4 2 39 39 H 1.09007 * 110.59926 * 95.01361 * 5 4 2 40 40 H 1.08998 * 110.75685 * 279.62633 * 6 5 4 41 41 H 1.09000 * 110.75408 * 156.25653 * 6 5 4 42 42 H 0.97001 * 119.99656 * 336.84295 * 9 7 2 43 43 H 0.97001 * 119.99794 * 359.97438 * 12 10 9 44 44 H 1.09002 * 109.47153 * 304.99547 * 15 13 12 45 45 H 1.09001 * 109.46832 * 184.99738 * 15 13 12 46 46 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 47 47 H 1.08003 * 120.00329 * 0.02562 * 25 24 13 48 48 H 1.07999 * 119.99665 * 180.25260 * 26 25 24 49 49 H 1.07990 * 120.00066 * 179.76241 * 27 26 25 50 50 H 1.07998 * 120.00025 * 179.97438 * 28 27 26 51 51 H 1.07998 * 120.00190 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0611 -0.7550 -1.2337 5 6 2.8884 -1.9433 -0.7014 6 6 3.3131 -1.5033 0.7216 7 6 2.0583 -0.7555 1.2369 8 1 1.3132 -1.4643 1.5980 9 7 2.4229 0.1878 2.2969 10 6 2.4566 -0.2211 3.5806 11 8 2.1840 -1.3729 3.8591 12 7 2.7915 0.6468 4.5558 13 6 2.8288 0.2022 5.9512 14 1 2.0418 -0.5331 6.1193 15 6 2.6113 1.4023 6.8749 16 6 1.2228 1.9504 6.6679 17 1 0.5615 1.4887 5.9497 18 6 0.7965 3.0408 7.3962 19 7 1.6016 3.6027 8.2711 20 14 -0.9248 3.7197 7.1402 21 1 -1.9240 2.6665 7.4530 22 1 -1.1358 4.8847 8.0366 23 1 -1.0830 4.1481 5.7271 24 6 4.1692 -0.4210 6.2443 25 6 5.3204 0.1386 5.7224 26 6 6.5505 -0.4302 5.9954 27 6 6.6284 -1.5643 6.7818 28 6 5.4766 -2.1272 7.2988 29 6 4.2470 -1.5555 7.0303 30 1 -0.3634 0.4916 0.9024 31 1 -0.3633 0.5357 -0.8770 32 1 -0.3633 -1.0274 -0.0255 33 1 3.1443 1.4262 -0.0253 34 1 1.6761 1.9622 -0.8769 35 1 1.7174 1.9471 0.9025 36 1 2.6928 -0.0984 -1.8317 37 1 1.2277 -1.1196 -1.8343 38 1 3.7654 -2.1083 -1.3273 39 1 2.2783 -2.8455 -0.6557 40 1 4.1717 -0.8332 0.6787 41 1 3.5294 -2.3705 1.3456 42 1 2.6400 1.1067 2.0747 43 1 3.0086 1.5657 4.3337 44 1 3.3449 2.1751 6.6453 45 1 2.7270 1.0881 7.9122 46 1 1.3018 4.3700 8.7832 47 1 5.2594 1.0226 5.1050 48 1 7.4503 0.0094 5.5909 49 1 7.5890 -2.0109 6.9918 50 1 5.5373 -3.0136 7.9129 51 1 3.3472 -1.9950 7.4346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133680369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:04 Heat of formation + Delta-G solvation = -44.457873 kcal Electronic energy + Delta-G solvation = -29128.807951 eV Core-core repulsion = 25412.141436 eV Total energy + Delta-G solvation = -3716.666515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.49448 -40.36000 -39.35177 -36.76988 -34.84021 -34.59360 -33.14565 -32.28405 -31.66887 -30.53232 -28.50199 -28.25635 -26.61041 -25.28161 -23.78477 -23.38972 -22.49887 -21.40785 -21.21127 -19.99826 -19.11478 -18.56957 -17.71733 -17.34185 -16.58897 -16.42873 -16.26213 -16.09911 -15.78247 -15.46976 -15.05262 -14.85352 -14.50086 -14.28374 -14.18103 -14.17367 -14.08612 -13.81487 -13.66504 -13.44743 -13.11300 -12.92642 -12.81438 -12.63295 -12.49642 -12.43646 -12.15647 -11.97154 -11.87474 -11.83301 -11.58128 -11.49351 -11.42479 -11.33626 -11.31176 -11.18918 -10.58328 -10.18630 -9.75459 -9.64150 -9.48900 -8.19955 -6.29837 0.52659 0.57193 1.38828 1.40791 1.48746 1.87721 2.29147 2.39724 2.96867 3.13346 3.42706 3.53025 3.68546 3.88285 4.02044 4.04829 4.21741 4.31611 4.32802 4.34591 4.40700 4.43048 4.46418 4.53823 4.66621 4.73976 4.76829 4.77867 4.80415 4.89861 4.97704 5.00958 5.10409 5.13384 5.13988 5.20998 5.21470 5.30340 5.32666 5.37106 5.38282 5.44090 5.52483 5.62185 5.63891 5.65620 5.72399 5.78528 5.91894 6.15639 6.17876 6.22492 6.82062 7.21704 7.38955 7.73053 8.90588 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007771 B = 0.004631 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3602.326722 B = 6044.731567 C = 8954.699035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.132 4.132 7 C 0.164 3.836 8 H 0.061 0.939 9 N -0.730 5.730 10 C 0.700 3.300 11 O -0.639 6.639 12 N -0.713 5.713 13 C 0.220 3.780 14 H 0.053 0.947 15 C 0.039 3.961 16 C -0.528 4.528 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.925 5.925 20 Si 0.955 3.045 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.267 1.267 24 C -0.096 4.096 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.124 4.124 29 C -0.134 4.134 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.407 0.593 43 H 0.403 0.597 44 H 0.013 0.987 45 H 0.004 0.996 46 H 0.264 0.736 47 H 0.119 0.881 48 H 0.146 0.854 49 H 0.151 0.849 50 H 0.143 0.857 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.119 -6.551 -18.380 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.204 4.204 4 C -0.144 4.144 5 C -0.155 4.155 6 C -0.171 4.171 7 C 0.058 3.942 8 H 0.079 0.921 9 N -0.388 5.388 10 C 0.400 3.600 11 O -0.521 6.521 12 N -0.366 5.366 13 C 0.114 3.886 14 H 0.071 0.929 15 C 0.002 3.998 16 C -0.566 4.566 17 H 0.069 0.931 18 C -0.186 4.186 19 N -0.565 5.565 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.191 1.191 24 C -0.098 4.098 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.142 4.142 29 C -0.153 4.153 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.246 0.754 43 H 0.238 0.762 44 H 0.031 0.969 45 H 0.022 0.978 46 H 0.073 0.927 47 H 0.137 0.863 48 H 0.164 0.836 49 H 0.169 0.831 50 H 0.161 0.839 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.859 -7.415 -17.998 20.638 hybrid contribution -1.044 1.210 0.551 1.690 sum 5.815 -6.205 -17.447 19.409 Atomic orbital electron populations 1.21917 0.94042 1.01880 1.01811 1.21419 0.95800 0.96224 0.93662 1.21934 1.01606 0.94417 1.02450 1.22266 0.99936 0.96494 0.95706 1.22270 1.00385 0.98274 0.94598 1.22841 0.97687 0.99502 0.97089 1.21776 0.96362 0.90195 0.85835 0.92059 1.45311 1.74476 1.15180 1.03820 1.16177 0.77738 0.84417 0.81644 1.90827 1.58541 1.19515 1.83183 1.44925 1.73036 1.13158 1.05481 1.19548 0.92372 0.96318 0.80389 0.92878 1.19125 0.96155 0.91341 0.93222 1.21334 0.99624 1.13540 1.22094 0.93138 1.25750 1.01043 0.97076 0.94750 1.70061 1.37704 1.23192 1.25544 0.85657 0.80142 0.77726 0.78423 1.20249 1.20714 1.19139 1.20492 0.95944 0.95708 0.97624 1.21037 0.92361 1.00108 1.00287 1.21429 0.97443 0.96575 0.98808 1.21456 0.99096 0.96345 0.97870 1.21376 0.91959 1.00582 1.00258 1.21168 0.98830 0.95962 0.99304 0.94377 0.90599 0.92647 0.91388 0.90396 0.93053 0.89831 0.90354 0.89913 0.91688 0.90826 0.93732 0.75398 0.76249 0.96903 0.97761 0.92707 0.86289 0.83620 0.83100 0.83903 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.16 71.98 0.59 -2.04 16 2 C -0.07 -1.28 0.92 -51.39 -0.05 -1.33 16 3 C -0.15 -2.30 7.07 71.98 0.51 -1.79 16 4 C -0.11 -1.48 6.12 31.39 0.19 -1.29 16 5 C -0.12 -1.91 6.83 31.67 0.22 -1.69 16 6 C -0.13 -3.02 6.58 31.89 0.21 -2.81 16 7 C 0.16 4.20 2.57 46.07 0.12 4.32 16 8 H 0.06 1.96 7.32 -2.39 -0.02 1.94 16 9 N -0.73 -21.03 4.94 -452.68 -2.24 -23.26 16 10 C 0.70 26.98 8.52 179.06 1.53 28.51 16 11 O -0.64 -29.86 15.68 -4.00 -0.06 -29.92 16 12 N -0.71 -27.63 4.02 -461.42 -1.86 -29.48 16 13 C 0.22 9.76 2.12 44.24 0.09 9.85 16 14 H 0.05 2.67 7.44 -2.39 -0.02 2.65 16 15 C 0.04 2.00 4.50 29.85 0.13 2.14 16 16 C -0.53 -29.14 8.84 25.60 0.23 -28.92 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 18 C 0.01 0.70 5.46 84.66 0.46 1.16 16 19 N -0.93 -54.32 13.29 21.45 0.28 -54.04 16 20 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 C -0.10 -3.84 4.91 -19.87 -0.10 -3.93 16 25 C -0.12 -4.14 9.33 22.27 0.21 -3.93 16 26 C -0.12 -3.54 10.05 22.27 0.22 -3.32 16 27 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 28 C -0.12 -3.72 10.05 22.27 0.22 -3.49 16 29 C -0.13 -5.01 9.67 22.27 0.22 -4.79 16 30 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.96 8.11 -2.39 -0.02 0.94 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.92 6.65 -2.38 -0.02 0.91 16 36 H 0.08 0.93 7.68 -2.39 -0.02 0.92 16 37 H 0.08 0.95 7.68 -2.38 -0.02 0.93 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.41 9.65 5.82 -92.71 -0.54 9.11 16 43 H 0.40 14.11 8.62 -92.71 -0.80 13.31 16 44 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 47 H 0.12 3.87 7.71 -2.91 -0.02 3.85 16 48 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 49 H 0.15 2.87 8.06 -2.92 -0.02 2.84 16 50 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 51 H 0.11 4.15 8.04 -2.91 -0.02 4.13 16 Total: -1.00 -70.77 407.22 2.95 -67.82 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.43 Total: 39.62 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 5.22 Total: -16.59 kcal Atomic # 7 Polarization: -102.98 SS G_CDS: -3.81 Total: -106.79 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.06 Total: -29.92 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -70.77 2.95 -67.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133680369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.358 kcal (2) G-P(sol) polarization free energy of solvation -70.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds