Wall clock time and date at job start Tue Mar 31 2020 16:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46915 * 2 1 4 4 C 1.52996 * 112.84842 * 65.23198 * 3 2 1 5 5 N 1.46505 * 109.47211 * 64.99006 * 4 3 2 6 6 C 1.34773 * 120.00020 * 175.08801 * 5 4 3 7 7 O 1.21590 * 120.00488 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99851 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47259 * 35.00786 * 9 8 6 11 11 C 1.53004 * 109.47021 * 155.00571 * 9 8 6 12 12 C 1.50699 * 109.47086 * 295.00198 * 11 9 8 13 13 H 1.08005 * 120.00114 * 0.02562 * 12 11 9 14 14 C 1.37874 * 120.00148 * 179.97438 * 12 11 9 15 15 N 1.31517 * 119.99733 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00362 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46825 * 60.00143 * 16 14 12 18 18 H 1.48499 * 109.47562 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47316 * 300.00554 * 16 14 12 20 20 C 1.50701 * 109.47445 * 275.00584 * 9 8 6 21 21 C 1.38235 * 119.99662 * 319.72633 * 20 9 8 22 22 C 1.38240 * 119.99898 * 179.78720 * 21 20 9 23 23 C 1.38237 * 119.99518 * 0.44150 * 22 21 20 24 24 C 1.38232 * 120.00313 * 359.81291 * 23 22 21 25 25 C 1.38231 * 120.00072 * 359.97438 * 24 23 22 26 26 C 1.53780 * 113.61361 * 294.03818 * 3 2 1 27 27 C 1.53954 * 87.01632 * 220.04881 * 26 3 2 28 28 C 1.53779 * 87.11540 * 25.36172 * 27 26 3 29 29 H 1.09003 * 109.47244 * 174.86162 * 1 2 3 30 30 H 1.09000 * 109.47130 * 294.86621 * 1 2 3 31 31 H 1.09002 * 109.47568 * 54.86428 * 1 2 3 32 32 H 1.08998 * 109.47117 * 120.00065 * 2 1 3 33 33 H 1.08997 * 109.47267 * 240.00333 * 2 1 3 34 34 H 1.09003 * 109.47354 * 184.98935 * 4 3 2 35 35 H 1.09006 * 109.47257 * 304.99344 * 4 3 2 36 36 H 0.96999 * 119.99849 * 355.09428 * 5 4 3 37 37 H 0.96999 * 120.00018 * 0.02562 * 8 6 5 38 38 H 1.09002 * 109.47034 * 55.00304 * 11 9 8 39 39 H 1.08994 * 109.47149 * 175.00300 * 11 9 8 40 40 H 0.97006 * 119.99986 * 179.97438 * 15 14 12 41 41 H 1.07997 * 120.00438 * 0.02562 * 21 20 9 42 42 H 1.07997 * 120.00653 * 180.27752 * 22 21 20 43 43 H 1.08003 * 119.99837 * 179.83393 * 23 22 21 44 44 H 1.08007 * 120.00331 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00399 * 180.02562 * 25 24 23 46 46 H 1.09000 * 113.61326 * 334.56553 * 26 3 2 47 47 H 1.08996 * 113.61808 * 105.47116 * 26 3 2 48 48 H 1.09008 * 113.53808 * 270.80845 * 27 26 3 49 49 H 1.09004 * 113.74690 * 139.94750 * 27 26 3 50 50 H 1.08997 * 113.61817 * 220.09569 * 28 27 26 51 51 H 1.08997 * 113.68860 * 89.19265 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6811 2.1995 1.2802 5 7 2.3692 1.5866 2.4192 6 6 2.2811 2.1480 3.6413 7 8 1.6302 3.1628 3.7987 8 7 2.9138 1.5838 4.6891 9 6 2.8185 2.1943 6.0174 10 1 1.8282 2.6309 6.1465 11 6 3.0479 1.1252 7.0877 12 6 1.9331 0.1127 7.0334 13 1 1.1404 0.2206 6.3077 14 6 1.9255 -0.9521 7.9093 15 7 2.8910 -1.0837 8.7925 16 14 0.5434 -2.2068 7.8424 17 1 0.5186 -2.8449 6.5018 18 1 0.7660 -3.2444 8.8811 19 1 -0.7538 -1.5281 8.0915 20 6 3.8638 3.2716 6.1514 21 6 5.1318 3.0718 5.6385 22 6 6.0894 4.0617 5.7575 23 6 5.7815 5.2478 6.3974 24 6 4.5150 5.4454 6.9149 25 6 3.5562 4.4573 6.7920 26 6 1.7041 2.2146 -1.2868 27 6 3.1139 2.8260 -1.1922 28 6 3.5195 1.5729 -0.3985 29 1 -0.3634 -1.0236 -0.0920 30 1 -0.3633 0.4321 0.9324 31 1 -0.3634 0.5914 -0.8404 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.9908 3.2404 1.1859 35 1 0.6037 2.1540 1.4394 36 1 2.8882 0.7769 2.2936 37 1 3.4327 0.7740 4.5636 38 1 4.0003 0.6273 6.9056 39 1 3.0653 1.5940 8.0716 40 1 2.8856 -1.8327 9.4091 41 1 5.3733 2.1439 5.1415 42 1 7.0787 3.9075 5.3528 43 1 6.5304 6.0201 6.4927 44 1 4.2746 6.3719 7.4152 45 1 2.5666 4.6118 7.1960 46 1 1.5639 1.5732 -2.1569 47 1 0.9024 2.9425 -1.1627 48 1 3.1516 3.7448 -0.6069 49 1 3.6188 2.9160 -2.1541 50 1 4.1810 1.7834 0.4418 51 1 3.8768 0.7549 -1.0240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133737890.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:05 Heat of formation + Delta-G solvation = -7.478485 kcal Electronic energy + Delta-G solvation = -28786.399464 eV Core-core repulsion = 25071.336495 eV Total energy + Delta-G solvation = -3715.062968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.35675 -39.40112 -38.36497 -35.24871 -33.94454 -32.73230 -32.56657 -30.92386 -30.39421 -28.79315 -27.12471 -26.04025 -24.94531 -24.30959 -22.24583 -21.91470 -21.67606 -20.64413 -19.75637 -18.70161 -17.63819 -16.78506 -16.13571 -15.96724 -15.79821 -15.21391 -14.90488 -14.56150 -14.54384 -14.50877 -14.20150 -13.65025 -13.46690 -13.21833 -13.00233 -12.86619 -12.64096 -12.52704 -12.47122 -12.19122 -12.07094 -11.89401 -11.49830 -11.39460 -11.10333 -11.08894 -10.88554 -10.69176 -10.60797 -10.55010 -10.41027 -10.28989 -10.15306 -9.73780 -9.61938 -9.27478 -8.80195 -8.48922 -8.42959 -8.22316 -8.11717 -6.06781 -4.09739 1.83459 1.85682 3.18807 3.29587 3.34714 3.37857 3.78462 4.24623 4.35173 4.40622 4.42018 4.43423 4.66550 4.87209 4.88348 5.12021 5.29615 5.30590 5.31579 5.32586 5.38002 5.42524 5.50502 5.51910 5.58862 5.60206 5.73554 5.76731 5.80552 5.85498 5.93032 5.96343 5.97378 5.99579 6.17008 6.21819 6.24213 6.31181 6.41344 6.48112 6.63781 6.81003 6.89496 6.90561 7.02590 7.16872 7.39637 7.46120 7.55318 7.72693 7.90446 8.29114 8.59713 8.96057 9.18091 9.54921 11.03767 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007602 B = 0.004376 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3682.264375 B = 6397.498565 C = 9354.057961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.095 4.095 4 C 0.167 3.833 5 N -0.749 5.749 6 C 0.703 3.297 7 O -0.599 6.599 8 N -0.717 5.717 9 C 0.202 3.798 10 H 0.086 0.914 11 C 0.024 3.976 12 C -0.518 4.518 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.069 4.069 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.143 4.143 28 C -0.133 4.133 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.393 0.607 37 H 0.396 0.604 38 H 0.024 0.976 39 H 0.034 0.966 40 H 0.262 0.738 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.269 5.924 -17.498 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.095 4.095 4 C 0.042 3.958 5 N -0.405 5.405 6 C 0.403 3.597 7 O -0.478 6.478 8 N -0.369 5.369 9 C 0.097 3.903 10 H 0.104 0.896 11 C -0.013 4.013 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.071 4.071 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.126 4.126 26 C -0.162 4.162 27 C -0.180 4.180 28 C -0.170 4.170 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.227 0.773 37 H 0.229 0.771 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.138 0.862 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.710 6.746 -17.176 18.652 hybrid contribution -0.201 -1.571 -0.026 1.584 sum 2.508 5.175 -17.202 18.138 Atomic orbital electron populations 1.21763 0.95618 1.01464 1.02141 1.21458 0.96273 0.94839 1.01916 1.22108 0.96842 0.95824 0.94726 1.20804 0.96738 0.95945 0.82305 1.45010 1.57051 1.31214 1.07267 1.15984 0.80227 0.83148 0.80309 1.90871 1.46647 1.26101 1.84223 1.45120 1.54293 1.29959 1.07541 1.20096 0.96170 0.92127 0.81866 0.89633 1.19390 0.97717 0.91797 0.92427 1.21102 1.08612 1.08232 1.17669 0.92440 1.24979 0.95870 0.97963 0.95316 1.69953 1.32281 1.30896 1.20052 0.86661 0.82716 0.81029 0.77608 1.20339 1.21347 1.20235 1.20613 0.95427 0.95307 0.95735 1.20884 0.92942 0.98691 0.99942 1.21028 0.98914 0.94227 1.00251 1.20976 0.96690 0.97580 1.00184 1.21032 0.93711 0.98912 1.00489 1.21019 0.99393 0.93084 0.99151 1.22920 0.97395 0.99184 0.96713 1.22860 0.96828 0.97924 1.00377 1.22981 0.95649 0.98222 1.00183 0.92924 0.92303 0.92747 0.91710 0.91932 0.91699 0.91792 0.77332 0.77059 0.95802 0.94743 0.92861 0.86693 0.86869 0.86937 0.86678 0.86214 0.89856 0.91259 0.90081 0.91631 0.91135 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.53 37.16 0.35 -1.08 16 2 C -0.11 -0.96 5.27 -26.73 -0.14 -1.10 16 3 C -0.09 -0.87 0.48 -153.70 -0.07 -0.94 16 4 C 0.17 2.07 4.76 -4.04 -0.02 2.05 16 5 N -0.75 -10.40 5.16 -65.22 -0.34 -10.74 16 6 C 0.70 12.91 8.52 -86.92 -0.74 12.17 16 7 O -0.60 -13.28 16.00 5.29 0.08 -13.20 16 8 N -0.72 -13.17 4.05 -59.81 -0.24 -13.41 16 9 C 0.20 4.21 2.11 -69.08 -0.15 4.06 16 10 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 11 C 0.02 0.58 4.49 -27.88 -0.13 0.46 16 12 C -0.52 -13.78 8.84 -34.44 -0.30 -14.08 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 16 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 C -0.07 -1.32 4.91 -104.62 -0.51 -1.83 16 21 C -0.11 -1.83 9.32 -39.58 -0.37 -2.20 16 22 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 23 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 24 C -0.12 -1.92 10.05 -39.59 -0.40 -2.31 16 25 C -0.11 -1.94 9.67 -39.59 -0.38 -2.32 16 26 C -0.12 -1.00 6.46 -25.83 -0.17 -1.17 16 27 C -0.14 -1.17 7.74 -25.83 -0.20 -1.37 16 28 C -0.13 -1.14 7.13 -25.92 -0.18 -1.32 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.64 7.00 -51.93 -0.36 0.28 16 31 H 0.05 0.46 7.49 -51.93 -0.39 0.07 16 32 H 0.06 0.63 7.26 -51.93 -0.38 0.25 16 33 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.06 0.88 7.31 -51.93 -0.38 0.50 16 35 H 0.06 0.87 6.82 -51.93 -0.35 0.52 16 36 H 0.39 4.61 7.66 -40.82 -0.31 4.30 16 37 H 0.40 6.64 8.62 -40.82 -0.35 6.29 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 41 H 0.12 1.85 7.73 -52.49 -0.41 1.45 16 42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 44 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.12 2.07 8.04 -52.49 -0.42 1.65 16 46 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 47 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 48 H 0.08 0.73 7.61 -51.92 -0.40 0.34 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 51 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 LS Contribution 410.22 15.07 6.18 6.18 Total: -1.00 -31.33 410.22 -11.63 -42.96 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -8.73 Total: 11.16 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -4.30 Total: -14.15 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.16 Total: -49.08 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.33 -11.63 -42.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133737890.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.477 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds