Wall clock time and date at job start Tue Mar 31 2020 16:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46915 * 2 1 4 4 C 1.52996 * 112.84842 * 65.23198 * 3 2 1 5 5 N 1.46505 * 109.47211 * 64.99006 * 4 3 2 6 6 C 1.34773 * 120.00020 * 175.08801 * 5 4 3 7 7 O 1.21590 * 120.00488 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99851 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99874 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47259 * 35.00786 * 9 8 6 11 11 C 1.53004 * 109.47021 * 155.00571 * 9 8 6 12 12 C 1.50699 * 109.47086 * 295.00198 * 11 9 8 13 13 H 1.08005 * 120.00114 * 0.02562 * 12 11 9 14 14 C 1.37874 * 120.00148 * 179.97438 * 12 11 9 15 15 N 1.31517 * 119.99733 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00362 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46825 * 60.00143 * 16 14 12 18 18 H 1.48499 * 109.47562 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47316 * 300.00554 * 16 14 12 20 20 C 1.50701 * 109.47445 * 275.00584 * 9 8 6 21 21 C 1.38235 * 119.99662 * 319.72633 * 20 9 8 22 22 C 1.38240 * 119.99898 * 179.78720 * 21 20 9 23 23 C 1.38237 * 119.99518 * 0.44150 * 22 21 20 24 24 C 1.38232 * 120.00313 * 359.81291 * 23 22 21 25 25 C 1.38231 * 120.00072 * 359.97438 * 24 23 22 26 26 C 1.53780 * 113.61361 * 294.03818 * 3 2 1 27 27 C 1.53954 * 87.01632 * 220.04881 * 26 3 2 28 28 C 1.53779 * 87.11540 * 25.36172 * 27 26 3 29 29 H 1.09003 * 109.47244 * 174.86162 * 1 2 3 30 30 H 1.09000 * 109.47130 * 294.86621 * 1 2 3 31 31 H 1.09002 * 109.47568 * 54.86428 * 1 2 3 32 32 H 1.08998 * 109.47117 * 120.00065 * 2 1 3 33 33 H 1.08997 * 109.47267 * 240.00333 * 2 1 3 34 34 H 1.09003 * 109.47354 * 184.98935 * 4 3 2 35 35 H 1.09006 * 109.47257 * 304.99344 * 4 3 2 36 36 H 0.96999 * 119.99849 * 355.09428 * 5 4 3 37 37 H 0.96999 * 120.00018 * 0.02562 * 8 6 5 38 38 H 1.09002 * 109.47034 * 55.00304 * 11 9 8 39 39 H 1.08994 * 109.47149 * 175.00300 * 11 9 8 40 40 H 0.97006 * 119.99986 * 179.97438 * 15 14 12 41 41 H 1.07997 * 120.00438 * 0.02562 * 21 20 9 42 42 H 1.07997 * 120.00653 * 180.27752 * 22 21 20 43 43 H 1.08003 * 119.99837 * 179.83393 * 23 22 21 44 44 H 1.08007 * 120.00331 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00399 * 180.02562 * 25 24 23 46 46 H 1.09000 * 113.61326 * 334.56553 * 26 3 2 47 47 H 1.08996 * 113.61808 * 105.47116 * 26 3 2 48 48 H 1.09008 * 113.53808 * 270.80845 * 27 26 3 49 49 H 1.09004 * 113.74690 * 139.94750 * 27 26 3 50 50 H 1.08997 * 113.61817 * 220.09569 * 28 27 26 51 51 H 1.08997 * 113.68860 * 89.19265 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6811 2.1995 1.2802 5 7 2.3692 1.5866 2.4192 6 6 2.2811 2.1480 3.6413 7 8 1.6302 3.1628 3.7987 8 7 2.9138 1.5838 4.6891 9 6 2.8185 2.1943 6.0174 10 1 1.8282 2.6309 6.1465 11 6 3.0479 1.1252 7.0877 12 6 1.9331 0.1127 7.0334 13 1 1.1404 0.2206 6.3077 14 6 1.9255 -0.9521 7.9093 15 7 2.8910 -1.0837 8.7925 16 14 0.5434 -2.2068 7.8424 17 1 0.5186 -2.8449 6.5018 18 1 0.7660 -3.2444 8.8811 19 1 -0.7538 -1.5281 8.0915 20 6 3.8638 3.2716 6.1514 21 6 5.1318 3.0718 5.6385 22 6 6.0894 4.0617 5.7575 23 6 5.7815 5.2478 6.3974 24 6 4.5150 5.4454 6.9149 25 6 3.5562 4.4573 6.7920 26 6 1.7041 2.2146 -1.2868 27 6 3.1139 2.8260 -1.1922 28 6 3.5195 1.5729 -0.3985 29 1 -0.3634 -1.0236 -0.0920 30 1 -0.3633 0.4321 0.9324 31 1 -0.3634 0.5914 -0.8404 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.9908 3.2404 1.1859 35 1 0.6037 2.1540 1.4394 36 1 2.8882 0.7769 2.2936 37 1 3.4327 0.7740 4.5636 38 1 4.0003 0.6273 6.9056 39 1 3.0653 1.5940 8.0716 40 1 2.8856 -1.8327 9.4091 41 1 5.3733 2.1439 5.1415 42 1 7.0787 3.9075 5.3528 43 1 6.5304 6.0201 6.4927 44 1 4.2746 6.3719 7.4152 45 1 2.5666 4.6118 7.1960 46 1 1.5639 1.5732 -2.1569 47 1 0.9024 2.9425 -1.1627 48 1 3.1516 3.7448 -0.6069 49 1 3.6188 2.9160 -2.1541 50 1 4.1810 1.7834 0.4418 51 1 3.8768 0.7549 -1.0240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133737890.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:04 Heat of formation + Delta-G solvation = -24.018076 kcal Electronic energy + Delta-G solvation = -28787.116674 eV Core-core repulsion = 25071.336495 eV Total energy + Delta-G solvation = -3715.780179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47045 -40.59250 -39.66523 -36.84891 -35.24940 -34.69528 -33.43515 -32.33318 -31.67236 -30.53331 -28.25674 -26.73263 -26.55683 -25.29917 -23.78208 -23.36993 -22.48979 -21.99353 -21.26712 -19.81270 -18.87573 -18.49674 -17.69709 -17.19571 -16.85806 -16.51744 -16.22166 -16.19504 -15.77112 -15.65804 -15.11754 -14.93735 -14.89227 -14.50172 -14.18983 -14.17047 -14.00740 -13.64824 -13.54440 -13.42050 -13.35834 -13.10415 -12.90434 -12.65168 -12.62365 -12.44754 -12.14641 -12.10204 -11.86538 -11.80162 -11.57605 -11.34383 -11.33682 -11.23784 -10.98952 -10.87930 -10.57949 -10.23813 -9.75520 -9.65986 -9.49053 -8.19598 -6.29460 0.52777 0.57459 1.39228 1.41278 1.49129 1.84316 2.27845 2.40112 2.96826 3.13663 3.40298 3.62992 3.65805 3.74382 4.00374 4.02112 4.05159 4.09032 4.22087 4.33125 4.40280 4.44916 4.54751 4.60739 4.64661 4.67096 4.75472 4.80269 4.80679 4.87802 4.92762 5.05122 5.11814 5.12459 5.14239 5.18507 5.21347 5.22522 5.30644 5.43183 5.44852 5.49502 5.58289 5.60000 5.62443 5.64235 5.66019 5.78821 5.90909 6.14600 6.17866 6.22634 6.82547 7.20283 7.39338 7.70385 8.90923 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007602 B = 0.004376 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3682.264375 B = 6397.498565 C = 9354.057961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.092 4.092 4 C 0.168 3.832 5 N -0.730 5.730 6 C 0.701 3.299 7 O -0.640 6.640 8 N -0.712 5.712 9 C 0.219 3.781 10 H 0.054 0.946 11 C 0.039 3.961 12 C -0.528 4.528 13 H 0.051 0.949 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.277 1.277 20 C -0.097 4.097 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.117 4.117 27 C -0.142 4.142 28 C -0.128 4.128 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.406 0.594 37 H 0.403 0.597 38 H 0.013 0.987 39 H 0.004 0.996 40 H 0.264 0.736 41 H 0.119 0.881 42 H 0.146 0.854 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.111 0.889 46 H 0.102 0.898 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 5.742 -19.633 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 C -0.092 4.092 4 C 0.043 3.957 5 N -0.386 5.386 6 C 0.401 3.599 7 O -0.522 6.522 8 N -0.365 5.365 9 C 0.113 3.887 10 H 0.072 0.928 11 C 0.002 3.998 12 C -0.566 4.566 13 H 0.069 0.931 14 C -0.186 4.186 15 N -0.565 5.565 16 Si 0.780 3.220 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.202 1.202 20 C -0.098 4.098 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.153 4.153 26 C -0.155 4.155 27 C -0.180 4.180 28 C -0.166 4.166 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.242 0.758 37 H 0.239 0.761 38 H 0.031 0.969 39 H 0.023 0.977 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.164 0.836 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.129 0.871 46 H 0.121 0.879 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.099 0.901 50 H 0.077 0.923 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.962 6.534 -19.351 20.805 hybrid contribution -0.559 -1.440 0.640 1.672 sum 3.403 5.094 -18.711 19.688 Atomic orbital electron populations 1.21756 0.96050 1.01770 1.01366 1.21464 0.95857 0.94456 1.02464 1.22021 0.97899 0.95823 0.93476 1.20872 0.95697 0.95888 0.83201 1.44875 1.56438 1.31171 1.06139 1.16111 0.79751 0.82788 0.81232 1.90837 1.48365 1.28010 1.84999 1.44912 1.54492 1.30206 1.06885 1.19557 0.95490 0.91622 0.81985 0.92806 1.19126 0.96482 0.92037 0.92197 1.21342 1.08931 1.08852 1.17475 0.93082 1.25748 0.98114 0.99861 0.94898 1.70064 1.34007 1.31671 1.20782 0.85658 0.79526 0.78642 0.78133 1.19135 1.20745 1.20246 1.20491 0.95868 0.95394 0.98041 1.21041 0.92718 0.99801 1.00225 1.21431 0.99712 0.93663 0.99477 1.21459 0.96891 0.98103 0.98319 1.21378 0.93611 0.99118 1.00081 1.21173 1.00097 0.93931 1.00057 1.22940 0.97195 0.99046 0.96332 1.22843 0.97081 0.97209 1.00840 1.22999 0.94524 0.98994 1.00060 0.92416 0.94619 0.91648 0.92630 0.89856 0.92958 0.93230 0.75796 0.76144 0.96887 0.97744 0.92717 0.86259 0.83633 0.83111 0.83892 0.87084 0.87935 0.91673 0.91458 0.90112 0.92337 0.88232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.53 71.98 0.69 -1.99 16 2 C -0.10 -1.69 5.27 30.60 0.16 -1.53 16 3 C -0.09 -1.57 0.48 -51.66 -0.03 -1.59 16 4 C 0.17 4.22 4.76 86.38 0.41 4.63 16 5 N -0.73 -20.62 5.16 -478.52 -2.47 -23.09 16 6 C 0.70 26.75 8.52 179.05 1.53 28.28 16 7 O -0.64 -29.78 16.00 -4.00 -0.06 -29.84 16 8 N -0.71 -27.31 4.05 -461.40 -1.87 -29.18 16 9 C 0.22 9.68 2.11 44.25 0.09 9.77 16 10 H 0.05 2.68 7.44 -2.39 -0.02 2.67 16 11 C 0.04 1.99 4.49 29.85 0.13 2.13 16 12 C -0.53 -29.05 8.84 25.60 0.23 -28.83 16 13 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 14 C 0.01 0.70 5.46 84.65 0.46 1.16 16 15 N -0.93 -54.26 13.29 21.45 0.28 -53.97 16 16 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 C -0.10 -3.82 4.91 -19.87 -0.10 -3.92 16 21 C -0.12 -4.11 9.32 22.27 0.21 -3.90 16 22 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 23 C -0.13 -3.44 10.05 22.27 0.22 -3.21 16 24 C -0.12 -3.70 10.05 22.27 0.22 -3.47 16 25 C -0.13 -4.97 9.67 22.27 0.22 -4.76 16 26 C -0.12 -1.65 6.46 31.18 0.20 -1.45 16 27 C -0.14 -2.08 7.74 31.18 0.24 -1.84 16 28 C -0.13 -1.94 7.13 31.12 0.22 -1.71 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.03 0.78 7.00 -2.39 -0.02 0.76 16 31 H 0.06 0.99 7.49 -2.39 -0.02 0.97 16 32 H 0.05 1.00 7.26 -2.39 -0.02 0.98 16 33 H 0.08 1.05 8.07 -2.39 -0.02 1.03 16 34 H 0.05 1.46 7.31 -2.39 -0.02 1.44 16 35 H 0.05 1.40 6.82 -2.38 -0.02 1.39 16 36 H 0.41 9.41 7.66 -92.71 -0.71 8.70 16 37 H 0.40 13.97 8.62 -92.71 -0.80 13.17 16 38 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 41 H 0.12 3.85 7.73 -2.91 -0.02 3.83 16 42 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 43 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 44 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 45 H 0.11 4.14 8.04 -2.91 -0.02 4.11 16 46 H 0.10 1.11 8.10 -2.39 -0.02 1.09 16 47 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 48 H 0.07 1.17 7.61 -2.38 -0.02 1.15 16 49 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.06 1.04 7.95 -2.39 -0.02 1.02 16 51 H 0.10 1.18 8.05 -2.39 -0.02 1.16 16 Total: -1.00 -70.11 410.22 2.66 -67.46 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.59 Total: 38.36 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 5.34 Total: -15.54 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -4.05 Total: -106.24 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.06 Total: -29.84 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -70.11 2.66 -67.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133737890.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.441 kcal (2) G-P(sol) polarization free energy of solvation -70.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds