Wall clock time and date at job start Tue Mar 31 2020 16:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47092 * 2 1 4 4 C 1.53000 * 112.85062 * 65.22855 * 3 2 1 5 5 N 1.46500 * 109.47161 * 64.99497 * 4 3 2 6 6 C 1.34784 * 120.00119 * 175.09384 * 5 4 3 7 7 O 1.21585 * 119.99761 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99649 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99817 * 179.97438 * 8 6 5 10 10 H 1.09009 * 109.46710 * 324.99932 * 9 8 6 11 11 C 1.52990 * 109.47387 * 205.00088 * 9 8 6 12 12 C 1.50705 * 109.47335 * 64.99567 * 11 9 8 13 13 H 1.07991 * 119.99678 * 0.02562 * 12 11 9 14 14 C 1.37875 * 120.00135 * 180.02562 * 12 11 9 15 15 N 1.31519 * 119.99833 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00274 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46769 * 89.99894 * 16 14 12 18 18 H 1.48499 * 109.47547 * 210.00094 * 16 14 12 19 19 H 1.48503 * 109.46851 * 330.00691 * 16 14 12 20 20 C 1.50700 * 109.47174 * 84.99610 * 9 8 6 21 21 C 1.38227 * 119.99845 * 39.73002 * 20 9 8 22 22 C 1.38236 * 119.99803 * 179.78458 * 21 20 9 23 23 C 1.38240 * 120.00229 * 0.44345 * 22 21 20 24 24 C 1.38238 * 119.99520 * 359.81193 * 23 22 21 25 25 C 1.38226 * 120.00121 * 359.97438 * 24 23 22 26 26 C 1.53780 * 113.61368 * 294.03307 * 3 2 1 27 27 C 1.53963 * 87.02036 * 220.04890 * 26 3 2 28 28 C 1.53779 * 113.61405 * 196.42372 * 3 2 1 29 29 H 1.09004 * 109.47172 * 54.86899 * 1 2 3 30 30 H 1.09002 * 109.47525 * 174.86776 * 1 2 3 31 31 H 1.09004 * 109.47874 * 294.86813 * 1 2 3 32 32 H 1.09000 * 109.46827 * 119.99207 * 2 1 3 33 33 H 1.08990 * 109.47320 * 239.99490 * 2 1 3 34 34 H 1.09001 * 109.47441 * 184.98999 * 4 3 2 35 35 H 1.08999 * 109.47241 * 304.99507 * 4 3 2 36 36 H 0.96999 * 120.00075 * 355.08430 * 5 4 3 37 37 H 0.96996 * 120.00768 * 359.97438 * 8 6 5 38 38 H 1.09005 * 109.47357 * 184.99632 * 11 9 8 39 39 H 1.08994 * 109.47259 * 304.99612 * 11 9 8 40 40 H 0.97004 * 119.99666 * 180.02562 * 15 14 12 41 41 H 1.08003 * 120.00467 * 359.97438 * 21 20 9 42 42 H 1.08007 * 120.00408 * 180.27551 * 22 21 20 43 43 H 1.07996 * 120.00318 * 179.83229 * 23 22 21 44 44 H 1.08001 * 119.99217 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.00009 * 180.02562 * 25 24 23 46 46 H 1.08994 * 113.61370 * 334.56459 * 26 3 2 47 47 H 1.09003 * 113.61388 * 105.47125 * 26 3 2 48 48 H 1.09002 * 113.53431 * 270.81396 * 27 26 3 49 49 H 1.08988 * 113.74399 * 139.94317 * 27 26 3 50 50 H 1.09002 * 113.61721 * 254.52551 * 28 3 2 51 51 H 1.08997 * 113.61348 * 25.35249 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6810 2.1996 1.2802 5 7 2.3691 1.5868 2.4191 6 6 2.2809 2.1482 3.6413 7 8 1.6307 3.1634 3.7985 8 7 2.9136 1.5841 4.6891 9 6 2.8182 2.1946 6.0175 10 1 2.7855 3.2795 5.9172 11 6 4.0379 1.7960 6.8507 12 6 5.2817 2.3801 6.2318 13 1 5.2094 2.9762 5.3343 14 6 6.5119 2.1533 6.8115 15 7 6.6000 1.4268 7.9043 16 14 8.0537 2.8765 6.0441 17 1 8.3083 4.2220 6.6188 18 1 9.2107 1.9900 6.3279 19 1 7.8677 2.9929 4.5753 20 6 1.5640 1.7153 6.7018 21 6 1.1690 0.3966 6.5762 22 6 0.0209 -0.0441 7.2075 23 6 -0.7372 0.8361 7.9569 24 6 -0.3450 2.1562 8.0781 25 6 0.8055 2.5958 7.4504 26 6 1.7042 2.2145 -1.2869 27 6 3.1141 2.8259 -1.1922 28 6 3.5195 1.5727 -0.3984 29 1 -0.3634 0.5914 -0.8405 30 1 -0.3634 -1.0235 -0.0919 31 1 -0.3635 0.4322 0.9324 32 1 1.8932 -0.5137 0.8901 33 1 1.8933 -0.5139 -0.8898 34 1 1.9907 3.2404 1.1858 35 1 0.6036 2.1541 1.4393 36 1 2.8881 0.7769 2.2937 37 1 3.4320 0.7739 4.5639 38 1 3.9243 2.1762 7.8660 39 1 4.1208 0.7096 6.8768 40 1 7.4655 1.2676 8.3124 41 1 1.7590 -0.2902 5.9874 42 1 -0.2854 -1.0755 7.1132 43 1 -1.6356 0.4925 8.4479 44 1 -0.9370 2.8437 8.6639 45 1 1.1121 3.6270 7.5454 46 1 1.5641 1.5731 -2.1569 47 1 0.9024 2.9424 -1.1628 48 1 3.1517 3.7447 -0.6069 49 1 3.6189 2.9158 -2.1540 50 1 4.1811 1.7833 0.4419 51 1 3.8769 0.7548 -1.0239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133738087.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:08 Heat of formation + Delta-G solvation = -7.493401 kcal Electronic energy + Delta-G solvation = -28785.543471 eV Core-core repulsion = 25070.479856 eV Total energy + Delta-G solvation = -3715.063615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.34649 -39.39767 -38.36155 -35.24838 -33.94191 -32.74333 -32.58759 -30.92365 -30.39235 -28.79642 -27.12601 -26.01357 -24.94885 -24.31637 -22.24287 -21.91878 -21.67238 -20.64272 -19.75564 -18.69409 -17.63015 -16.78420 -16.14361 -16.02827 -15.68785 -15.24871 -14.90382 -14.57224 -14.54533 -14.50353 -14.21224 -13.65014 -13.48224 -13.18774 -13.00426 -12.85080 -12.69547 -12.50500 -12.47349 -12.19562 -12.07497 -11.90896 -11.50328 -11.38334 -11.10563 -11.09368 -10.89807 -10.70215 -10.58616 -10.54189 -10.41529 -10.27504 -10.14294 -9.74005 -9.62016 -9.26368 -8.80178 -8.48980 -8.43277 -8.22462 -8.11456 -6.07111 -4.09988 1.83582 1.85821 3.18882 3.28352 3.35258 3.38412 3.78656 4.24849 4.36052 4.41140 4.42875 4.44538 4.70352 4.86696 4.87516 5.09237 5.29117 5.30018 5.31391 5.32541 5.35134 5.42579 5.52913 5.53944 5.58293 5.60781 5.75256 5.77469 5.80260 5.83968 5.92687 5.96469 5.96989 5.99643 6.14425 6.21945 6.24240 6.31950 6.41377 6.48156 6.63712 6.81174 6.89626 6.90656 7.02493 7.16946 7.39710 7.46223 7.55341 7.72618 7.90301 8.28906 8.59784 8.96099 9.18140 9.54761 11.03476 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007519 B = 0.004377 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3722.945230 B = 6394.978553 C = 9302.543198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.095 4.095 4 C 0.167 3.833 5 N -0.749 5.749 6 C 0.703 3.297 7 O -0.599 6.599 8 N -0.717 5.717 9 C 0.202 3.798 10 H 0.086 0.914 11 C 0.024 3.976 12 C -0.517 4.517 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.069 4.069 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.143 4.143 28 C -0.134 4.134 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.393 0.607 37 H 0.396 0.604 38 H 0.034 0.966 39 H 0.024 0.976 40 H 0.261 0.739 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.083 0.917 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 -4.151 -13.945 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.095 4.095 4 C 0.042 3.958 5 N -0.405 5.405 6 C 0.403 3.597 7 O -0.478 6.478 8 N -0.369 5.369 9 C 0.098 3.902 10 H 0.104 0.896 11 C -0.014 4.014 12 C -0.555 4.555 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.071 4.071 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.162 4.162 27 C -0.180 4.180 28 C -0.172 4.172 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.227 0.773 37 H 0.229 0.771 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.138 0.862 46 H 0.101 0.899 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.103 -3.265 -13.655 18.537 hybrid contribution 1.445 -0.457 -0.400 1.567 sum -10.658 -3.722 -14.056 18.028 Atomic orbital electron populations 1.21760 0.95689 1.01346 1.02123 1.21447 0.96138 0.94954 1.01858 1.22107 0.96985 0.95707 0.94742 1.20800 0.96512 0.96143 0.82319 1.45013 1.56988 1.31292 1.07255 1.15982 0.80218 0.83167 0.80291 1.90869 1.46818 1.25835 1.84321 1.45118 1.53597 1.30654 1.07544 1.20094 0.92427 0.97651 0.80077 0.89639 1.19395 0.89575 0.97447 0.94965 1.21137 0.91094 1.32303 1.10995 0.92393 1.24982 0.99075 0.95174 0.94926 1.69965 1.24806 1.38789 1.19613 0.86604 0.82763 0.79065 0.79624 1.20645 1.21305 1.19955 1.20610 0.96487 0.93611 0.96359 1.20881 0.96478 0.95521 0.99586 1.21030 0.95816 0.99076 0.98491 1.20978 0.99973 0.93986 1.00499 1.21031 0.97108 0.95833 1.00170 1.21018 0.94588 0.99602 0.97445 1.22921 0.97458 0.99165 0.96641 1.22861 0.96704 0.98012 1.00432 1.22996 0.95600 0.98230 1.00345 0.92691 0.93006 0.92416 0.91849 0.91900 0.91621 0.91894 0.77334 0.77056 0.94741 0.95783 0.92924 0.86695 0.86870 0.86936 0.86679 0.86215 0.89888 0.91291 0.90007 0.91608 0.90899 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.53 37.15 0.35 -0.92 16 2 C -0.11 -0.90 5.27 -26.74 -0.14 -1.04 16 3 C -0.09 -0.88 0.48 -153.70 -0.07 -0.95 16 4 C 0.17 2.07 4.76 -4.04 -0.02 2.05 16 5 N -0.75 -10.41 5.16 -65.23 -0.34 -10.75 16 6 C 0.70 12.92 8.52 -86.92 -0.74 12.18 16 7 O -0.60 -13.29 16.00 5.29 0.08 -13.20 16 8 N -0.72 -13.17 4.02 -59.81 -0.24 -13.41 16 9 C 0.20 4.21 2.12 -69.09 -0.15 4.06 16 10 H 0.09 1.96 7.44 -51.92 -0.39 1.58 16 11 C 0.02 0.57 4.50 -27.89 -0.13 0.44 16 12 C -0.52 -13.74 8.84 -34.44 -0.30 -14.05 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 16 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.07 -1.32 4.91 -104.62 -0.51 -1.83 16 21 C -0.11 -1.83 9.33 -39.59 -0.37 -2.20 16 22 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 23 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 24 C -0.12 -1.92 10.05 -39.59 -0.40 -2.31 16 25 C -0.11 -1.94 9.67 -39.58 -0.38 -2.32 16 26 C -0.12 -1.02 6.46 -25.82 -0.17 -1.19 16 27 C -0.14 -1.27 7.74 -25.82 -0.20 -1.47 16 28 C -0.13 -1.25 7.13 -25.92 -0.18 -1.44 16 29 H 0.05 0.43 7.49 -51.93 -0.39 0.04 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.56 7.00 -51.93 -0.36 0.20 16 32 H 0.06 0.56 7.25 -51.93 -0.38 0.18 16 33 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 34 H 0.07 0.92 7.31 -51.93 -0.38 0.54 16 35 H 0.06 0.83 6.82 -51.93 -0.35 0.47 16 36 H 0.39 4.61 7.66 -40.82 -0.31 4.30 16 37 H 0.40 6.64 8.62 -40.82 -0.35 6.29 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.12 1.85 7.71 -52.48 -0.40 1.45 16 42 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.12 2.07 8.04 -52.48 -0.42 1.64 16 46 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 47 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 48 H 0.08 0.81 7.61 -51.93 -0.40 0.42 16 49 H 0.07 0.53 8.14 -51.94 -0.42 0.10 16 50 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 51 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 LS Contribution 410.19 15.07 6.18 6.18 Total: -1.00 -31.35 410.19 -11.63 -42.98 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -8.73 Total: 11.17 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -4.30 Total: -14.16 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.16 Total: -49.08 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.35 -11.63 -42.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133738087.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.488 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds