Wall clock time and date at job start Tue Mar 31 2020 16:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47092 * 2 1 4 4 C 1.53000 * 112.85062 * 65.22855 * 3 2 1 5 5 N 1.46500 * 109.47161 * 64.99497 * 4 3 2 6 6 C 1.34784 * 120.00119 * 175.09384 * 5 4 3 7 7 O 1.21585 * 119.99761 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99649 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99817 * 179.97438 * 8 6 5 10 10 H 1.09009 * 109.46710 * 324.99932 * 9 8 6 11 11 C 1.52990 * 109.47387 * 205.00088 * 9 8 6 12 12 C 1.50705 * 109.47335 * 64.99567 * 11 9 8 13 13 H 1.07991 * 119.99678 * 0.02562 * 12 11 9 14 14 C 1.37875 * 120.00135 * 180.02562 * 12 11 9 15 15 N 1.31519 * 119.99833 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00274 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46769 * 89.99894 * 16 14 12 18 18 H 1.48499 * 109.47547 * 210.00094 * 16 14 12 19 19 H 1.48503 * 109.46851 * 330.00691 * 16 14 12 20 20 C 1.50700 * 109.47174 * 84.99610 * 9 8 6 21 21 C 1.38227 * 119.99845 * 39.73002 * 20 9 8 22 22 C 1.38236 * 119.99803 * 179.78458 * 21 20 9 23 23 C 1.38240 * 120.00229 * 0.44345 * 22 21 20 24 24 C 1.38238 * 119.99520 * 359.81193 * 23 22 21 25 25 C 1.38226 * 120.00121 * 359.97438 * 24 23 22 26 26 C 1.53780 * 113.61368 * 294.03307 * 3 2 1 27 27 C 1.53963 * 87.02036 * 220.04890 * 26 3 2 28 28 C 1.53779 * 113.61405 * 196.42372 * 3 2 1 29 29 H 1.09004 * 109.47172 * 54.86899 * 1 2 3 30 30 H 1.09002 * 109.47525 * 174.86776 * 1 2 3 31 31 H 1.09004 * 109.47874 * 294.86813 * 1 2 3 32 32 H 1.09000 * 109.46827 * 119.99207 * 2 1 3 33 33 H 1.08990 * 109.47320 * 239.99490 * 2 1 3 34 34 H 1.09001 * 109.47441 * 184.98999 * 4 3 2 35 35 H 1.08999 * 109.47241 * 304.99507 * 4 3 2 36 36 H 0.96999 * 120.00075 * 355.08430 * 5 4 3 37 37 H 0.96996 * 120.00768 * 359.97438 * 8 6 5 38 38 H 1.09005 * 109.47357 * 184.99632 * 11 9 8 39 39 H 1.08994 * 109.47259 * 304.99612 * 11 9 8 40 40 H 0.97004 * 119.99666 * 180.02562 * 15 14 12 41 41 H 1.08003 * 120.00467 * 359.97438 * 21 20 9 42 42 H 1.08007 * 120.00408 * 180.27551 * 22 21 20 43 43 H 1.07996 * 120.00318 * 179.83229 * 23 22 21 44 44 H 1.08001 * 119.99217 * 180.02562 * 24 23 22 45 45 H 1.08003 * 120.00009 * 180.02562 * 25 24 23 46 46 H 1.08994 * 113.61370 * 334.56459 * 26 3 2 47 47 H 1.09003 * 113.61388 * 105.47125 * 26 3 2 48 48 H 1.09002 * 113.53431 * 270.81396 * 27 26 3 49 49 H 1.08988 * 113.74399 * 139.94317 * 27 26 3 50 50 H 1.09002 * 113.61721 * 254.52551 * 28 3 2 51 51 H 1.08997 * 113.61348 * 25.35249 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6810 2.1996 1.2802 5 7 2.3691 1.5868 2.4191 6 6 2.2809 2.1482 3.6413 7 8 1.6307 3.1634 3.7985 8 7 2.9136 1.5841 4.6891 9 6 2.8182 2.1946 6.0175 10 1 2.7855 3.2795 5.9172 11 6 4.0379 1.7960 6.8507 12 6 5.2817 2.3801 6.2318 13 1 5.2094 2.9762 5.3343 14 6 6.5119 2.1533 6.8115 15 7 6.6000 1.4268 7.9043 16 14 8.0537 2.8765 6.0441 17 1 8.3083 4.2220 6.6188 18 1 9.2107 1.9900 6.3279 19 1 7.8677 2.9929 4.5753 20 6 1.5640 1.7153 6.7018 21 6 1.1690 0.3966 6.5762 22 6 0.0209 -0.0441 7.2075 23 6 -0.7372 0.8361 7.9569 24 6 -0.3450 2.1562 8.0781 25 6 0.8055 2.5958 7.4504 26 6 1.7042 2.2145 -1.2869 27 6 3.1141 2.8259 -1.1922 28 6 3.5195 1.5727 -0.3984 29 1 -0.3634 0.5914 -0.8405 30 1 -0.3634 -1.0235 -0.0919 31 1 -0.3635 0.4322 0.9324 32 1 1.8932 -0.5137 0.8901 33 1 1.8933 -0.5139 -0.8898 34 1 1.9907 3.2404 1.1858 35 1 0.6036 2.1541 1.4393 36 1 2.8881 0.7769 2.2937 37 1 3.4320 0.7739 4.5639 38 1 3.9243 2.1762 7.8660 39 1 4.1208 0.7096 6.8768 40 1 7.4655 1.2676 8.3124 41 1 1.7590 -0.2902 5.9874 42 1 -0.2854 -1.0755 7.1132 43 1 -1.6356 0.4925 8.4479 44 1 -0.9370 2.8437 8.6639 45 1 1.1121 3.6270 7.5454 46 1 1.5641 1.5731 -2.1569 47 1 0.9024 2.9424 -1.1628 48 1 3.1517 3.7447 -0.6069 49 1 3.6189 2.9158 -2.1540 50 1 4.1811 1.7833 0.4419 51 1 3.8769 0.7548 -1.0239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133738087.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:07 Heat of formation + Delta-G solvation = -24.053325 kcal Electronic energy + Delta-G solvation = -28786.261564 eV Core-core repulsion = 25070.479856 eV Total energy + Delta-G solvation = -3715.781707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47334 -40.59650 -39.66561 -36.85055 -35.25298 -34.69732 -33.42619 -32.33141 -31.67070 -30.53662 -28.25765 -26.74153 -26.56005 -25.29372 -23.78061 -23.37174 -22.48889 -21.99640 -21.26709 -19.81612 -18.87636 -18.50523 -17.69943 -17.22681 -16.78427 -16.51664 -16.38781 -16.05728 -15.78529 -15.67046 -15.13016 -14.93165 -14.88355 -14.47891 -14.22057 -14.17144 -13.99593 -13.65332 -13.54592 -13.42202 -13.34782 -13.10966 -12.90277 -12.65808 -12.61502 -12.45555 -12.13590 -12.10721 -11.86413 -11.79516 -11.57866 -11.34809 -11.32275 -11.24098 -10.99863 -10.88156 -10.58652 -10.24006 -9.75481 -9.66100 -9.48870 -8.19916 -6.29671 0.52862 0.57559 1.38593 1.40373 1.50315 1.84121 2.27869 2.39897 2.96906 3.13448 3.39929 3.62061 3.65161 3.74104 3.99163 4.02217 4.05155 4.08912 4.22124 4.33198 4.41337 4.45069 4.53408 4.61699 4.66307 4.67038 4.75911 4.79513 4.80969 4.87216 4.91244 5.05414 5.10678 5.12840 5.14283 5.19697 5.21417 5.22866 5.30504 5.43715 5.46215 5.49233 5.57658 5.59842 5.62523 5.64233 5.65976 5.78804 5.90899 6.14495 6.17850 6.22573 6.82576 7.20171 7.39197 7.70279 8.90823 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.007519 B = 0.004377 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3722.945230 B = 6394.978553 C = 9302.543198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.090 4.090 4 C 0.168 3.832 5 N -0.730 5.730 6 C 0.701 3.299 7 O -0.640 6.640 8 N -0.712 5.712 9 C 0.219 3.781 10 H 0.054 0.946 11 C 0.039 3.961 12 C -0.527 4.527 13 H 0.051 0.949 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.956 3.044 17 H -0.279 1.279 18 H -0.279 1.279 19 H -0.268 1.268 20 C -0.096 4.096 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.114 4.114 27 C -0.146 4.146 28 C -0.133 4.133 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.406 0.594 37 H 0.403 0.597 38 H 0.004 0.996 39 H 0.013 0.987 40 H 0.264 0.736 41 H 0.119 0.881 42 H 0.146 0.854 43 H 0.151 0.849 44 H 0.143 0.857 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.052 0.948 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.562 -5.762 -15.552 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C -0.090 4.090 4 C 0.043 3.957 5 N -0.386 5.386 6 C 0.401 3.599 7 O -0.522 6.522 8 N -0.365 5.365 9 C 0.113 3.887 10 H 0.072 0.928 11 C 0.001 3.999 12 C -0.565 4.565 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.565 5.565 16 Si 0.781 3.219 17 H -0.205 1.205 18 H -0.205 1.205 19 H -0.193 1.193 20 C -0.098 4.098 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.153 4.153 26 C -0.152 4.152 27 C -0.183 4.183 28 C -0.170 4.170 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.242 0.758 37 H 0.239 0.761 38 H 0.023 0.977 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.164 0.836 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.071 0.929 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.015 -4.907 -15.299 20.677 hybrid contribution 1.661 0.047 0.127 1.667 sum -11.354 -4.860 -15.171 19.563 Atomic orbital electron populations 1.21743 0.95658 1.01905 1.01450 1.21449 0.96105 0.93993 1.02545 1.22012 0.97362 0.96215 0.93460 1.20874 0.95878 0.95711 0.83197 1.44877 1.56400 1.31257 1.06107 1.16108 0.79814 0.82756 0.81197 1.90835 1.48566 1.27716 1.85084 1.44911 1.53859 1.30736 1.06991 1.19558 0.92327 0.95902 0.80867 0.92799 1.19130 0.90644 0.96221 0.93890 1.21366 0.92240 1.32098 1.10775 0.93097 1.25751 1.02112 0.95478 0.95312 1.70072 1.25663 1.39962 1.20842 0.85593 0.79091 0.78231 0.78967 1.20489 1.20485 1.19266 1.20488 0.96366 0.95032 0.97888 1.21039 0.97684 0.94732 1.00342 1.21432 0.94665 1.00831 0.97356 1.21461 1.00722 0.93229 0.99368 1.21378 0.96133 0.97127 0.99549 1.21174 0.96106 0.99408 0.98575 1.22927 0.96844 0.99029 0.96426 1.22858 0.97526 0.97187 1.00754 1.23028 0.94945 0.99071 0.99998 0.91881 0.92098 0.94315 0.92334 0.90018 0.93531 0.92570 0.75800 0.76143 0.97728 0.96878 0.92724 0.86256 0.83639 0.83110 0.83890 0.87073 0.87759 0.91503 0.91744 0.90235 0.92935 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.53 71.98 0.69 -1.57 16 2 C -0.10 -1.52 5.27 30.59 0.16 -1.35 16 3 C -0.09 -1.56 0.48 -51.66 -0.03 -1.58 16 4 C 0.17 4.23 4.76 86.38 0.41 4.64 16 5 N -0.73 -20.66 5.16 -478.53 -2.47 -23.13 16 6 C 0.70 26.78 8.52 179.05 1.53 28.31 16 7 O -0.64 -29.79 16.00 -3.98 -0.06 -29.85 16 8 N -0.71 -27.34 4.02 -461.42 -1.86 -29.19 16 9 C 0.22 9.68 2.12 44.24 0.09 9.77 16 10 H 0.05 2.69 7.44 -2.38 -0.02 2.67 16 11 C 0.04 1.97 4.50 29.85 0.13 2.11 16 12 C -0.53 -28.98 8.84 25.60 0.23 -28.75 16 13 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 14 C 0.01 0.67 5.46 84.65 0.46 1.14 16 15 N -0.93 -54.24 13.29 21.45 0.28 -53.95 16 16 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.10 -3.81 4.91 -19.87 -0.10 -3.91 16 21 C -0.12 -4.12 9.33 22.27 0.21 -3.91 16 22 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 23 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 24 C -0.12 -3.70 10.05 22.27 0.22 -3.47 16 25 C -0.13 -4.97 9.67 22.27 0.22 -4.76 16 26 C -0.11 -1.66 6.46 31.18 0.20 -1.46 16 27 C -0.15 -2.43 7.74 31.18 0.24 -2.19 16 28 C -0.13 -2.29 7.13 31.12 0.22 -2.07 16 29 H 0.06 0.84 7.49 -2.39 -0.02 0.82 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.72 7.00 -2.38 -0.02 0.71 16 32 H 0.06 0.92 7.25 -2.39 -0.02 0.90 16 33 H 0.08 0.95 8.07 -2.39 -0.02 0.93 16 34 H 0.05 1.36 7.31 -2.39 -0.02 1.34 16 35 H 0.06 1.51 6.82 -2.39 -0.02 1.49 16 36 H 0.41 9.43 7.66 -92.71 -0.71 8.72 16 37 H 0.40 13.99 8.62 -92.71 -0.80 13.19 16 38 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 39 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.12 3.86 7.71 -2.91 -0.02 3.83 16 42 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 43 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 44 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 45 H 0.11 4.14 8.04 -2.91 -0.02 4.12 16 46 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 47 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 48 H 0.06 1.29 7.61 -2.39 -0.02 1.27 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.05 1.12 7.95 -2.39 -0.02 1.10 16 51 H 0.10 1.37 8.05 -2.39 -0.02 1.35 16 Total: -1.00 -70.18 410.19 2.67 -67.52 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -0.59 Total: 38.36 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 5.34 Total: -15.58 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -4.04 Total: -106.28 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.06 Total: -29.85 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.18 2.67 -67.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133738087.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.465 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds