Wall clock time and date at job start Tue Mar 31 2020 16:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53111 * 109.52383 * 2 1 4 4 C 1.53035 * 109.28158 * 182.37287 * 3 2 1 5 5 N 1.46854 * 109.51814 * 59.18232 * 4 3 2 6 6 C 1.46905 * 110.99961 * 174.16474 * 5 4 3 7 7 C 1.50702 * 109.46632 * 293.46664 * 6 5 4 8 8 O 1.21279 * 120.00050 * 354.70109 * 7 6 5 9 9 N 1.34773 * 119.99665 * 174.98258 * 7 6 5 10 10 C 1.46497 * 120.00111 * 184.82476 * 9 7 6 11 11 H 1.09004 * 109.47298 * 320.97697 * 10 9 7 12 12 C 1.53001 * 109.47271 * 80.97608 * 10 9 7 13 13 C 1.50703 * 109.47249 * 182.82052 * 12 10 9 14 14 H 1.07992 * 119.99996 * 5.11188 * 13 12 10 15 15 C 1.37878 * 119.99615 * 185.10896 * 13 12 10 16 16 N 1.31514 * 120.00488 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99576 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46903 * 60.00254 * 17 15 13 19 19 H 1.48501 * 109.47132 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47365 * 300.00017 * 17 15 13 21 21 C 1.50706 * 109.47438 * 200.98025 * 10 9 7 22 22 C 1.38238 * 119.99609 * 319.72503 * 21 10 9 23 23 C 1.38233 * 119.99984 * 179.81057 * 22 21 10 24 24 C 1.38248 * 119.99649 * 0.39800 * 23 22 21 25 25 C 1.38230 * 119.99706 * 359.85645 * 24 23 22 26 26 C 1.38228 * 120.00056 * 140.00113 * 21 10 9 27 27 C 1.46856 * 111.19578 * 298.25472 * 5 4 3 28 28 C 1.53044 * 109.52055 * 61.74649 * 27 5 4 29 29 H 1.09002 * 109.46813 * 59.99855 * 1 2 3 30 30 H 1.08997 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47230 * 300.00196 * 1 2 3 32 32 H 1.09004 * 109.51981 * 120.12986 * 2 1 3 33 33 H 1.09007 * 109.50259 * 62.43379 * 3 2 1 34 34 H 1.08998 * 109.53704 * 302.33604 * 3 2 1 35 35 H 1.08997 * 109.46284 * 299.17082 * 4 3 2 36 36 H 1.09000 * 109.45690 * 179.18558 * 4 3 2 37 37 H 1.09005 * 109.46936 * 173.46517 * 6 5 4 38 38 H 1.08998 * 109.46943 * 53.46517 * 6 5 4 39 39 H 0.97005 * 120.00480 * 4.82320 * 9 7 6 40 40 H 1.08997 * 109.47241 * 302.82463 * 12 10 9 41 41 H 1.09006 * 109.47016 * 62.82209 * 12 10 9 42 42 H 0.96992 * 120.00033 * 179.97438 * 16 15 13 43 43 H 1.07999 * 119.99979 * 359.97438 * 22 21 10 44 44 H 1.07999 * 120.00422 * 180.22820 * 23 22 21 45 45 H 1.07998 * 119.99708 * 179.83588 * 24 23 22 46 46 H 1.08005 * 119.99904 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.00292 * 359.97386 * 26 21 10 48 48 H 1.08998 * 109.46308 * 181.75751 * 27 5 4 49 49 H 1.08992 * 109.46412 * 301.73170 * 27 5 4 50 50 H 1.08999 * 109.50122 * 180.87760 * 28 27 5 51 51 H 1.08999 * 109.49902 * 60.75953 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4370 -0.0598 5 7 4.0116 0.7425 -1.2764 6 6 5.4686 0.8372 -1.4381 7 6 5.8530 2.2712 -1.6972 8 8 4.9921 3.1138 -1.8382 9 7 7.1533 2.6162 -1.7778 10 6 7.5298 4.0245 -1.9237 11 1 6.8283 4.5205 -2.5946 12 6 7.4950 4.7063 -0.5545 13 6 7.8147 6.1704 -0.7141 14 1 7.9407 6.5911 -1.7007 15 6 7.9464 6.9725 0.3995 16 7 7.7935 6.4600 1.6010 17 14 8.3435 8.7871 0.2017 18 1 7.2726 9.4447 -0.5895 19 1 8.4319 9.4233 1.5407 20 1 9.6421 8.9358 -0.5031 21 6 8.9213 4.1159 -2.4952 22 6 9.9029 3.2416 -2.0674 23 6 11.1783 3.3228 -2.5944 24 6 11.4741 4.2837 -3.5433 25 6 10.4938 5.1613 -3.9671 26 6 9.2175 5.0775 -3.4429 27 6 3.5722 -0.6588 -1.2765 28 6 2.0430 -0.7152 -1.2529 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8943 -0.5157 0.8886 33 1 1.7152 1.9450 0.9109 34 1 1.6457 1.9702 -0.8679 35 1 3.9666 0.9223 0.8157 36 1 3.9378 2.4633 -0.0745 37 1 5.7817 0.2193 -2.2798 38 1 5.9585 0.4882 -0.5292 39 1 7.8400 1.9322 -1.7391 40 1 6.5018 4.5967 -0.1192 41 1 8.2322 4.2428 0.1011 42 1 7.8865 7.0243 2.3844 43 1 9.6727 2.4934 -1.3234 44 1 11.9443 2.6374 -2.2629 45 1 12.4712 4.3489 -3.9531 46 1 10.7251 5.9123 -4.7081 47 1 8.4516 5.7632 -3.7742 48 1 3.9400 -1.1547 -2.1747 49 1 3.9678 -1.1635 -0.3952 50 1 1.7174 -1.7553 -1.2373 51 1 1.6470 -0.2226 -2.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153507803.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:06 Heat of formation + Delta-G solvation = -23.597701 kcal Electronic energy + Delta-G solvation = -28574.428265 eV Core-core repulsion = 24858.666315 eV Total energy + Delta-G solvation = -3715.761950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.89954 -39.04521 -38.09040 -35.16378 -34.35990 -32.80545 -31.19278 -30.80546 -30.42873 -29.21960 -28.46998 -26.04041 -24.38770 -23.16477 -22.34818 -22.15247 -21.81687 -20.26683 -19.65916 -19.44542 -17.24583 -16.58670 -16.03468 -15.82884 -15.37325 -14.96632 -14.70935 -14.59395 -14.52310 -14.25634 -14.18590 -13.90623 -13.70468 -13.08846 -12.97874 -12.86200 -12.68521 -12.44498 -12.38694 -12.19530 -12.04093 -11.85248 -11.54123 -11.46962 -11.17137 -11.09635 -10.82613 -10.73066 -10.71425 -10.61619 -10.33976 -10.26472 -9.96682 -9.90847 -9.38709 -9.05312 -8.47292 -8.45314 -8.33019 -8.23156 -7.98935 -5.98454 -3.99529 1.83952 1.87105 3.15367 3.35765 3.39347 3.41213 3.47496 4.10024 4.30576 4.49156 4.69343 4.75003 4.77821 5.06610 5.22132 5.26614 5.28485 5.30252 5.34551 5.38165 5.39053 5.40438 5.46551 5.50963 5.53817 5.60006 5.61589 5.70133 5.80454 5.93365 5.96239 5.99747 6.00863 6.06604 6.18185 6.22318 6.31718 6.40546 6.44899 6.53281 6.75030 6.86179 6.90952 6.92301 7.02549 7.16352 7.19103 7.45194 7.65206 7.70333 7.99569 8.08881 8.37742 8.79937 9.04469 9.63316 11.13217 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.003237 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.289446 B = 8648.551513 C =10513.564297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.108 4.108 4 C 0.051 3.949 5 N -0.518 5.518 6 C 0.036 3.964 7 C 0.511 3.489 8 O -0.516 6.516 9 N -0.727 5.727 10 C 0.183 3.817 11 H 0.084 0.916 12 C 0.026 3.974 13 C -0.512 4.512 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.045 4.045 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.135 4.135 25 C -0.121 4.121 26 C -0.098 4.098 27 C 0.056 3.944 28 C -0.109 4.109 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.390 0.610 40 H 0.023 0.977 41 H 0.021 0.979 42 H 0.260 0.740 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.073 0.927 49 H 0.031 0.969 50 H 0.063 0.937 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 -15.934 -6.531 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.146 4.146 4 C -0.076 4.076 5 N -0.243 5.243 6 C -0.095 4.095 7 C 0.295 3.705 8 O -0.391 6.391 9 N -0.379 5.379 10 C 0.080 3.920 11 H 0.102 0.898 12 C -0.011 4.011 13 C -0.550 4.550 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.046 4.046 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.154 4.154 25 C -0.139 4.139 26 C -0.117 4.117 27 C -0.072 4.072 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.224 0.776 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.139 0.861 48 H 0.091 0.909 49 H 0.049 0.951 50 H 0.082 0.918 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.462 -15.028 -6.824 17.097 hybrid contribution 1.175 0.367 0.899 1.525 sum -3.287 -14.661 -5.925 16.150 Atomic orbital electron populations 1.21803 0.95260 1.01277 1.01894 1.21213 0.95516 0.96748 0.97955 1.21601 0.94782 0.95801 1.02404 1.22239 0.95821 1.00748 0.88793 1.61569 1.10105 1.13347 1.39312 1.21965 0.89769 0.95566 1.02198 1.20286 0.82683 0.90197 0.77323 1.90702 1.48890 1.51635 1.47830 1.46275 1.06956 1.09586 1.75131 1.20281 0.90994 0.79787 1.00953 0.89751 1.19397 0.97814 0.95031 0.88903 1.21027 1.47918 0.93385 0.92718 0.92432 1.24932 0.95403 0.98436 0.95276 1.69947 1.50079 1.35818 0.97548 0.86695 0.78964 0.85471 0.77165 1.20154 1.21349 1.20231 1.19897 0.95663 0.94720 0.94286 1.20827 0.93190 0.99972 0.99770 1.20973 0.96339 0.98997 0.97682 1.20974 0.98767 0.96718 0.98894 1.21038 0.93462 0.99036 1.00382 1.20974 0.96836 0.97621 0.96239 1.22103 0.96138 0.88530 1.00401 1.21623 0.94445 0.99917 0.98716 0.92559 0.93027 0.92768 0.91785 0.91653 0.90822 0.95563 0.88608 0.88310 0.92311 0.77647 0.95840 0.96018 0.93024 0.86738 0.86762 0.86910 0.86651 0.86094 0.90874 0.95121 0.91799 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.21 37.16 0.34 -0.93 16 2 C -0.10 -0.97 2.79 -90.50 -0.25 -1.23 16 3 C -0.11 -1.36 5.38 -26.66 -0.14 -1.51 16 4 C 0.05 0.75 5.12 -3.83 -0.02 0.73 16 5 N -0.52 -7.09 4.35 -236.10 -1.03 -8.12 16 6 C 0.04 0.47 5.45 -4.97 -0.03 0.45 16 7 C 0.51 8.92 7.27 -10.99 -0.08 8.84 16 8 O -0.52 -11.27 14.37 5.56 0.08 -11.19 16 9 N -0.73 -12.25 5.05 -54.93 -0.28 -12.53 16 10 C 0.18 3.75 2.22 -69.08 -0.15 3.60 16 11 H 0.08 1.89 7.50 -51.93 -0.39 1.50 16 12 C 0.03 0.68 4.70 -27.88 -0.13 0.54 16 13 C -0.51 -14.23 8.49 -34.44 -0.29 -14.53 16 14 H 0.06 1.55 6.57 -52.49 -0.34 1.20 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.05 -0.84 4.43 -104.62 -0.46 -1.30 16 22 C -0.12 -1.96 9.01 -39.58 -0.36 -2.32 16 23 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 24 C -0.14 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.12 -1.89 10.05 -39.59 -0.40 -2.29 16 26 C -0.10 -1.76 8.67 -39.59 -0.34 -2.10 16 27 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 28 C -0.11 -1.06 5.38 -26.65 -0.14 -1.20 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 1.76 6.04 -51.93 -0.31 1.44 16 37 H 0.10 1.03 7.97 -51.93 -0.41 0.62 16 38 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.39 5.29 6.90 -40.82 -0.28 5.01 16 40 H 0.02 0.67 8.12 -51.93 -0.42 0.25 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.11 1.69 6.99 -52.49 -0.37 1.32 16 44 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 45 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 47 H 0.12 2.13 7.83 -52.49 -0.41 1.72 16 48 H 0.07 0.67 8.01 -51.93 -0.42 0.26 16 49 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 51 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 403.15 15.07 6.08 6.08 Total: -1.00 -32.90 403.15 -11.64 -44.54 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.83 Total: 6.06 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -3.37 Total: -15.58 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.57 Total: -46.81 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.90 -11.64 -44.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153507803.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.944 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds