Wall clock time and date at job start Tue Mar 31 2020 16:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53111 * 109.52383 * 2 1 4 4 C 1.53035 * 109.28158 * 182.37287 * 3 2 1 5 5 N 1.46854 * 109.51814 * 59.18232 * 4 3 2 6 6 C 1.46905 * 110.99961 * 174.16474 * 5 4 3 7 7 C 1.50702 * 109.46632 * 293.46664 * 6 5 4 8 8 O 1.21279 * 120.00050 * 354.70109 * 7 6 5 9 9 N 1.34773 * 119.99665 * 174.98258 * 7 6 5 10 10 C 1.46497 * 120.00111 * 184.82476 * 9 7 6 11 11 H 1.09004 * 109.47298 * 320.97697 * 10 9 7 12 12 C 1.53001 * 109.47271 * 80.97608 * 10 9 7 13 13 C 1.50703 * 109.47249 * 182.82052 * 12 10 9 14 14 H 1.07992 * 119.99996 * 5.11188 * 13 12 10 15 15 C 1.37878 * 119.99615 * 185.10896 * 13 12 10 16 16 N 1.31514 * 120.00488 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99576 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46903 * 60.00254 * 17 15 13 19 19 H 1.48501 * 109.47132 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47365 * 300.00017 * 17 15 13 21 21 C 1.50706 * 109.47438 * 200.98025 * 10 9 7 22 22 C 1.38238 * 119.99609 * 319.72503 * 21 10 9 23 23 C 1.38233 * 119.99984 * 179.81057 * 22 21 10 24 24 C 1.38248 * 119.99649 * 0.39800 * 23 22 21 25 25 C 1.38230 * 119.99706 * 359.85645 * 24 23 22 26 26 C 1.38228 * 120.00056 * 140.00113 * 21 10 9 27 27 C 1.46856 * 111.19578 * 298.25472 * 5 4 3 28 28 C 1.53044 * 109.52055 * 61.74649 * 27 5 4 29 29 H 1.09002 * 109.46813 * 59.99855 * 1 2 3 30 30 H 1.08997 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47230 * 300.00196 * 1 2 3 32 32 H 1.09004 * 109.51981 * 120.12986 * 2 1 3 33 33 H 1.09007 * 109.50259 * 62.43379 * 3 2 1 34 34 H 1.08998 * 109.53704 * 302.33604 * 3 2 1 35 35 H 1.08997 * 109.46284 * 299.17082 * 4 3 2 36 36 H 1.09000 * 109.45690 * 179.18558 * 4 3 2 37 37 H 1.09005 * 109.46936 * 173.46517 * 6 5 4 38 38 H 1.08998 * 109.46943 * 53.46517 * 6 5 4 39 39 H 0.97005 * 120.00480 * 4.82320 * 9 7 6 40 40 H 1.08997 * 109.47241 * 302.82463 * 12 10 9 41 41 H 1.09006 * 109.47016 * 62.82209 * 12 10 9 42 42 H 0.96992 * 120.00033 * 179.97438 * 16 15 13 43 43 H 1.07999 * 119.99979 * 359.97438 * 22 21 10 44 44 H 1.07999 * 120.00422 * 180.22820 * 23 22 21 45 45 H 1.07998 * 119.99708 * 179.83588 * 24 23 22 46 46 H 1.08005 * 119.99904 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.00292 * 359.97386 * 26 21 10 48 48 H 1.08998 * 109.46308 * 181.75751 * 27 5 4 49 49 H 1.08992 * 109.46412 * 301.73170 * 27 5 4 50 50 H 1.08999 * 109.50122 * 180.87760 * 28 27 5 51 51 H 1.08999 * 109.49902 * 60.75953 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4370 -0.0598 5 7 4.0116 0.7425 -1.2764 6 6 5.4686 0.8372 -1.4381 7 6 5.8530 2.2712 -1.6972 8 8 4.9921 3.1138 -1.8382 9 7 7.1533 2.6162 -1.7778 10 6 7.5298 4.0245 -1.9237 11 1 6.8283 4.5205 -2.5946 12 6 7.4950 4.7063 -0.5545 13 6 7.8147 6.1704 -0.7141 14 1 7.9407 6.5911 -1.7007 15 6 7.9464 6.9725 0.3995 16 7 7.7935 6.4600 1.6010 17 14 8.3435 8.7871 0.2017 18 1 7.2726 9.4447 -0.5895 19 1 8.4319 9.4233 1.5407 20 1 9.6421 8.9358 -0.5031 21 6 8.9213 4.1159 -2.4952 22 6 9.9029 3.2416 -2.0674 23 6 11.1783 3.3228 -2.5944 24 6 11.4741 4.2837 -3.5433 25 6 10.4938 5.1613 -3.9671 26 6 9.2175 5.0775 -3.4429 27 6 3.5722 -0.6588 -1.2765 28 6 2.0430 -0.7152 -1.2529 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8943 -0.5157 0.8886 33 1 1.7152 1.9450 0.9109 34 1 1.6457 1.9702 -0.8679 35 1 3.9666 0.9223 0.8157 36 1 3.9378 2.4633 -0.0745 37 1 5.7817 0.2193 -2.2798 38 1 5.9585 0.4882 -0.5292 39 1 7.8400 1.9322 -1.7391 40 1 6.5018 4.5967 -0.1192 41 1 8.2322 4.2428 0.1011 42 1 7.8865 7.0243 2.3844 43 1 9.6727 2.4934 -1.3234 44 1 11.9443 2.6374 -2.2629 45 1 12.4712 4.3489 -3.9531 46 1 10.7251 5.9123 -4.7081 47 1 8.4516 5.7632 -3.7742 48 1 3.9400 -1.1547 -2.1747 49 1 3.9678 -1.1635 -0.3952 50 1 1.7174 -1.7553 -1.2373 51 1 1.6470 -0.2226 -2.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153507803.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:05 Heat of formation + Delta-G solvation = -43.888626 kcal Electronic energy + Delta-G solvation = -28575.308146 eV Core-core repulsion = 24858.666315 eV Total energy + Delta-G solvation = -3716.641831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24519 -40.22425 -39.31134 -36.68492 -35.42590 -34.85703 -32.72039 -31.75889 -31.66877 -30.45898 -30.00044 -27.34843 -25.97089 -24.15101 -23.94293 -23.52856 -22.79964 -21.61751 -21.00891 -20.57097 -18.77358 -18.32108 -17.45793 -17.00108 -16.72651 -16.45290 -16.28199 -15.94977 -15.49788 -15.45518 -15.32965 -15.05752 -14.90703 -14.54507 -14.33797 -14.16880 -14.05861 -13.99167 -13.69326 -13.28848 -13.14770 -13.07698 -12.91056 -12.73426 -12.64985 -12.54173 -12.41200 -12.13014 -11.94944 -11.86721 -11.64901 -11.59590 -11.39091 -11.25691 -11.15375 -10.64637 -10.56640 -9.96796 -9.69545 -9.44241 -9.25685 -8.20525 -6.29034 0.56446 0.61717 1.36064 1.39587 1.46420 1.75021 2.18478 2.41157 2.97496 3.04408 3.14335 3.79920 3.85550 3.87529 3.89464 3.96518 4.06204 4.24422 4.25756 4.30567 4.33519 4.35753 4.48577 4.51582 4.53515 4.62515 4.73924 4.75474 4.80131 4.82827 4.83966 4.86667 4.96770 5.02557 5.15163 5.15976 5.23657 5.24893 5.26709 5.32920 5.35973 5.48008 5.54848 5.55149 5.66303 5.69957 5.74704 5.91168 5.97705 6.18237 6.21330 6.23846 6.71575 6.82797 7.37862 7.42810 8.91697 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011509 B = 0.003237 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.289446 B = 8648.551513 C =10513.564297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.106 4.106 4 C 0.056 3.944 5 N -0.538 5.538 6 C 0.046 3.954 7 C 0.502 3.498 8 O -0.569 6.569 9 N -0.717 5.717 10 C 0.201 3.799 11 H 0.054 0.946 12 C 0.042 3.958 13 C -0.524 4.524 14 H 0.062 0.938 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.956 3.044 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.263 1.263 21 C -0.071 4.071 22 C -0.129 4.129 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.123 4.123 27 C 0.055 3.945 28 C -0.107 4.107 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.032 0.968 36 H 0.046 0.954 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.409 0.591 40 H -0.024 1.024 41 H 0.001 0.999 42 H 0.262 0.738 43 H 0.126 0.874 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.140 0.860 47 H 0.108 0.892 48 H 0.093 0.907 49 H 0.043 0.957 50 H 0.091 0.909 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 -17.952 -7.638 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C -0.144 4.144 4 C -0.072 4.072 5 N -0.263 5.263 6 C -0.085 4.085 7 C 0.289 3.711 8 O -0.446 6.446 9 N -0.370 5.370 10 C 0.096 3.904 11 H 0.072 0.928 12 C 0.004 3.996 13 C -0.563 4.563 14 H 0.080 0.920 15 C -0.193 4.193 16 N -0.573 5.573 17 Si 0.781 3.219 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.072 4.072 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.072 4.072 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.153 0.847 38 H 0.096 0.904 39 H 0.246 0.754 40 H -0.006 1.006 41 H 0.019 0.981 42 H 0.070 0.930 43 H 0.144 0.856 44 H 0.167 0.833 45 H 0.168 0.832 46 H 0.158 0.842 47 H 0.127 0.873 48 H 0.111 0.889 49 H 0.061 0.939 50 H 0.110 0.890 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.473 -17.091 -7.947 19.010 hybrid contribution 0.590 0.980 1.222 1.674 sum -1.883 -16.111 -6.725 17.559 Atomic orbital electron populations 1.21774 0.94081 1.02388 1.01668 1.21188 0.96476 0.94554 0.98741 1.21577 0.93478 0.97952 1.01402 1.22059 0.97054 0.98303 0.89802 1.61531 1.10456 1.15631 1.38690 1.21988 0.89907 0.92212 1.04413 1.21277 0.82055 0.91979 0.75789 1.90679 1.50286 1.53657 1.50027 1.46102 1.07664 1.08591 1.74624 1.19652 0.92374 0.81179 0.97202 0.92754 1.19125 0.94099 0.95031 0.91317 1.21414 1.47293 0.94602 0.92982 0.91987 1.25846 0.95279 1.03286 0.94916 1.70088 1.51265 1.37568 0.98355 0.85627 0.79237 0.79645 0.77384 1.19623 1.20807 1.18811 1.19758 0.94704 0.96726 0.95968 1.21045 0.93713 0.99818 1.00106 1.21399 0.96045 0.99309 0.96908 1.21454 0.99993 0.95381 0.97881 1.21359 0.92494 0.99840 1.00506 1.21075 0.98101 0.97790 0.97222 1.22242 0.96666 0.86364 1.01900 1.21641 0.93922 1.01228 0.97676 0.93105 0.91169 0.92776 0.91035 0.91809 0.92817 0.94946 0.93531 0.84664 0.90426 0.75435 1.00595 0.98052 0.92964 0.85616 0.83296 0.83237 0.84174 0.87338 0.88876 0.93906 0.89043 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.21 71.98 0.66 -1.65 16 2 C -0.09 -1.76 2.79 -10.72 -0.03 -1.79 16 3 C -0.11 -2.82 5.38 30.64 0.16 -2.66 16 4 C 0.06 1.73 5.12 86.32 0.44 2.17 16 5 N -0.54 -14.68 4.35 -900.87 -3.92 -18.59 16 6 C 0.05 1.16 5.45 85.56 0.47 1.63 16 7 C 0.50 18.49 7.27 87.66 0.64 19.13 16 8 O -0.57 -27.06 14.37 -3.03 -0.04 -27.11 16 9 N -0.72 -25.26 5.05 -446.09 -2.25 -27.51 16 10 C 0.20 8.79 2.22 44.25 0.10 8.89 16 11 H 0.05 2.67 7.50 -2.38 -0.02 2.65 16 12 C 0.04 2.32 4.70 29.85 0.14 2.46 16 13 C -0.52 -30.55 8.49 25.60 0.22 -30.34 16 14 H 0.06 3.47 6.57 -2.91 -0.02 3.46 16 15 C 0.00 0.26 5.46 84.65 0.46 0.72 16 16 N -0.93 -58.22 13.29 21.45 0.28 -57.94 16 17 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 18 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 21 C -0.07 -2.70 4.43 -19.86 -0.09 -2.79 16 22 C -0.13 -4.09 9.01 22.27 0.20 -3.89 16 23 C -0.12 -3.12 10.05 22.27 0.22 -2.89 16 24 C -0.13 -3.28 10.05 22.27 0.22 -3.05 16 25 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 26 C -0.12 -4.47 8.67 22.27 0.19 -4.28 16 27 C 0.06 1.03 5.46 86.33 0.47 1.50 16 28 C -0.11 -1.86 5.38 30.65 0.16 -1.70 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 1.90 6.04 -2.39 -0.01 1.88 16 37 H 0.14 2.46 7.97 -2.38 -0.02 2.45 16 38 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 39 H 0.41 11.07 6.90 -92.70 -0.64 10.43 16 40 H -0.02 -1.54 8.12 -2.39 -0.02 -1.56 16 41 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 42 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.13 3.58 6.99 -2.91 -0.02 3.56 16 44 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 45 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 46 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 47 H 0.11 4.05 7.83 -2.91 -0.02 4.03 16 48 H 0.09 1.40 8.01 -2.39 -0.02 1.38 16 49 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -77.74 403.15 1.23 -76.51 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.25 Total: 28.73 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 4.87 Total: -21.93 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -5.88 Total: -104.04 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.04 Total: -27.11 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.74 1.23 -76.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153507803.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.622 kcal (2) G-P(sol) polarization free energy of solvation -77.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds