Wall clock time and date at job start Tue Mar 31 2020 16:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.46916 * 2 1 4 4 C 1.38259 * 120.00028 * 270.01964 * 3 2 1 5 5 C 1.38216 * 120.00057 * 179.97438 * 4 3 2 6 6 C 1.38256 * 119.99843 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99898 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99840 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47119 * 269.95812 * 8 7 6 10 10 O 1.21281 * 120.00053 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99781 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00010 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47510 * 179.97438 * 12 11 9 14 14 C 1.53041 * 109.46203 * 295.03283 * 13 12 11 15 15 C 1.53192 * 109.31244 * 178.60093 * 14 13 12 16 16 N 1.46920 * 108.76952 * 54.65259 * 15 14 13 17 17 C 1.36932 * 120.63243 * 126.40258 * 16 15 14 18 18 H 1.08001 * 120.00445 * 332.60994 * 17 16 15 19 19 C 1.38812 * 120.00110 * 152.61274 * 17 16 15 20 20 N 1.31617 * 120.00460 * 159.34704 * 19 17 16 21 21 Si 1.86804 * 119.99841 * 339.34243 * 19 17 16 22 22 H 1.48500 * 109.46970 * 92.94657 * 21 19 17 23 23 H 1.48504 * 109.47241 * 212.94663 * 21 19 17 24 24 H 1.48501 * 109.46990 * 332.94607 * 21 19 17 25 25 C 1.46930 * 118.73782 * 306.38822 * 16 15 14 26 26 C 1.53039 * 109.46486 * 174.97246 * 13 12 11 27 27 C 1.38211 * 120.00192 * 90.00327 * 3 2 1 28 28 H 1.08999 * 109.47478 * 60.00187 * 1 2 3 29 29 H 1.09004 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47441 * 299.99892 * 1 2 3 31 31 H 1.09006 * 109.47045 * 240.00052 * 2 1 3 32 32 H 1.08999 * 109.47478 * 119.99813 * 2 1 3 33 33 H 1.07999 * 119.99934 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.99940 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00082 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.47307 * 29.95200 * 8 7 6 37 37 H 1.08993 * 109.47103 * 149.95441 * 8 7 6 38 38 H 0.97000 * 120.00520 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.47148 * 300.00496 * 12 11 9 40 40 H 1.09005 * 109.47163 * 59.99916 * 12 11 9 41 41 H 1.09007 * 109.45916 * 55.00334 * 13 12 11 42 42 H 1.09005 * 109.49300 * 298.56181 * 14 13 12 43 43 H 1.08998 * 109.50081 * 58.65854 * 14 13 12 44 44 H 1.09000 * 109.59644 * 294.85842 * 15 14 13 45 45 H 1.09003 * 109.70169 * 174.50228 * 15 14 13 46 46 H 0.97000 * 120.00099 * 179.97438 * 20 19 17 47 47 H 1.09007 * 109.58205 * 293.81609 * 25 16 15 48 48 H 1.09001 * 109.70427 * 173.46669 * 25 16 15 49 49 H 1.09001 * 109.49623 * 301.34149 * 26 13 12 50 50 H 1.09007 * 109.49333 * 61.43175 * 26 13 12 51 51 H 1.08003 * 119.99251 * 359.72315 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2623 2.0728 -1.1974 5 6 2.7224 3.3761 -1.1974 6 6 2.9532 4.0277 0.0000 7 6 2.7243 3.3756 1.1969 8 6 2.9764 4.0856 2.5020 9 6 4.3999 3.8484 2.9362 10 8 5.1370 3.1692 2.2533 11 7 4.8538 4.3911 4.0833 12 6 6.2375 4.1600 4.5057 13 6 6.4939 4.8820 5.8299 14 6 6.3818 6.3934 5.6167 15 6 6.6045 7.1112 6.9516 16 7 7.8898 6.6751 7.5142 17 6 8.8384 7.5924 7.8801 18 1 8.8769 8.5542 7.3904 19 6 9.7507 7.2859 8.8804 20 7 10.8832 7.9513 8.9646 21 14 9.3711 5.9293 10.1071 22 1 9.9445 4.6483 9.6217 23 1 9.9673 6.2712 11.4235 24 1 7.8997 5.7899 10.2513 25 6 8.1378 5.2361 7.6770 26 6 7.8975 4.5393 6.3342 27 6 2.2626 2.0724 1.1969 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0816 1.5639 -2.1327 34 1 2.9017 3.8854 -2.1327 35 1 3.3124 5.0462 0.0000 36 1 2.8096 5.1549 2.3721 37 1 2.2959 3.7016 3.2619 38 1 4.2645 4.9346 4.6293 39 1 6.4038 3.0907 4.6362 40 1 6.9182 4.5434 3.7455 41 1 5.7558 4.5635 6.5661 42 1 7.1363 6.7165 4.8993 43 1 5.3896 6.6344 5.2353 44 1 5.7992 6.8587 7.6413 45 1 6.6231 8.1891 6.7905 46 1 11.5206 7.7374 9.6639 47 1 7.4574 4.8306 8.4260 48 1 9.1682 5.0743 7.9936 49 1 7.9843 3.4604 6.4635 50 1 8.6376 4.8800 5.6100 51 1 2.0784 1.5647 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155654689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:18 Heat of formation + Delta-G solvation = -12.684975 kcal Electronic energy + Delta-G solvation = -27479.990079 eV Core-core repulsion = 23764.701341 eV Total energy + Delta-G solvation = -3715.288739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.29160 -39.24618 -38.06577 -35.17312 -34.66776 -33.00647 -32.55480 -31.10996 -30.37491 -29.80141 -28.32932 -26.52978 -24.23774 -23.84917 -22.88815 -22.27185 -21.33797 -20.99582 -20.13636 -19.36964 -17.25486 -16.81452 -16.67559 -16.13010 -16.04515 -15.27659 -15.26266 -15.01518 -14.34017 -14.16512 -14.03156 -13.87634 -13.85545 -13.53292 -13.39959 -13.28481 -13.11068 -12.84102 -12.55812 -12.32660 -12.17652 -12.02386 -11.97270 -11.77954 -11.57916 -11.39205 -11.12659 -11.03376 -10.84931 -10.65010 -10.52003 -10.15466 -10.03227 -9.87877 -9.67086 -9.43757 -9.06600 -8.98365 -8.81061 -8.62740 -6.98615 -5.95608 -3.31307 1.12123 1.20584 2.57667 3.10722 3.31046 3.47241 3.49826 3.62619 4.34294 4.43011 4.52071 4.59257 4.76527 4.82699 4.87880 4.92836 4.96678 4.98909 5.03081 5.10472 5.16396 5.18518 5.21330 5.28912 5.37127 5.41978 5.55933 5.56458 5.68578 5.76321 5.78257 5.85215 5.86986 5.90156 5.93870 6.04476 6.15782 6.25497 6.26172 6.34988 6.37618 6.40241 6.42413 6.48587 6.61382 6.63995 6.69026 6.80350 6.95284 7.44211 7.95759 8.16943 8.32198 8.93650 9.71563 10.09467 11.20418 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030689 B = 0.001907 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.168452 B =14680.944430 C =15057.880928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.060 4.060 8 C -0.104 4.104 9 C 0.511 3.489 10 O -0.534 6.534 11 N -0.727 5.727 12 C 0.124 3.876 13 C -0.091 4.091 14 C -0.129 4.129 15 C 0.148 3.852 16 N -0.606 5.606 17 C -0.260 4.260 18 H 0.085 0.915 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.883 3.117 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.127 3.873 26 C -0.126 4.126 27 C -0.103 4.103 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.400 0.600 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.021 0.979 45 H 0.062 0.938 46 H 0.262 0.738 47 H 0.024 0.976 48 H 0.073 0.927 49 H 0.055 0.945 50 H 0.068 0.932 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.337 -12.246 -17.244 30.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.061 4.061 8 C -0.144 4.144 9 C 0.296 3.704 10 O -0.410 6.410 11 N -0.379 5.379 12 C 0.001 3.999 13 C -0.110 4.110 14 C -0.168 4.168 15 C 0.022 3.978 16 N -0.330 5.330 17 C -0.388 4.388 18 H 0.102 0.898 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.197 1.197 25 C 0.001 3.999 26 C -0.166 4.166 27 C -0.121 4.121 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.235 0.765 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.038 0.962 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.091 0.909 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.627 -12.680 -17.634 30.651 hybrid contribution -0.247 -0.426 1.069 1.177 sum -21.874 -13.106 -16.565 30.408 Atomic orbital electron populations 1.21744 0.94737 1.01657 1.02173 1.20544 0.96106 0.92733 1.02914 1.19827 0.99203 0.96113 0.93097 1.20992 1.00410 0.95005 0.97387 1.21072 0.99506 0.94963 0.97872 1.20969 0.99719 1.00064 0.92005 1.19243 0.98877 0.94354 0.93621 1.20695 0.94786 1.02624 0.96301 1.20495 0.89368 0.79658 0.80833 1.90734 1.58267 1.38468 1.53551 1.46094 1.14324 1.53487 1.24043 1.21524 0.81678 1.00109 0.96605 1.21301 0.98734 0.96047 0.94900 1.22075 1.00262 0.94343 1.00108 1.20912 0.87632 0.97636 0.91593 1.44345 1.14043 1.00739 1.73835 1.18920 1.06929 0.98211 1.14755 0.89766 1.25284 0.96450 0.97833 0.98078 1.69838 1.07436 1.43429 1.34424 0.86942 0.78547 0.81594 0.81513 1.21627 1.23181 1.19659 1.21318 0.99979 0.84788 0.93822 1.21996 0.95369 0.99226 1.00024 1.20819 0.99757 0.93920 0.97583 0.92603 0.92443 0.92550 0.91066 0.91032 0.86349 0.86105 0.86264 0.87877 0.88017 0.76528 0.91819 0.91470 0.91204 0.91690 0.92997 0.96152 0.91908 0.92781 0.95826 0.90879 0.92594 0.91357 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.15 0.37 -0.49 16 2 C -0.09 -0.61 6.06 -27.88 -0.17 -0.78 16 3 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 4 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 5 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 6 C -0.11 -1.09 9.70 -39.58 -0.38 -1.47 16 7 C -0.06 -0.61 4.37 -104.63 -0.46 -1.07 16 8 C -0.10 -0.86 5.83 -29.03 -0.17 -1.03 16 9 C 0.51 6.07 7.82 -10.98 -0.09 5.99 16 10 O -0.53 -8.74 16.03 5.56 0.09 -8.65 16 11 N -0.73 -7.81 5.27 -60.29 -0.32 -8.13 16 12 C 0.12 1.61 5.06 -4.04 -0.02 1.59 16 13 C -0.09 -1.28 2.19 -90.58 -0.20 -1.48 16 14 C -0.13 -1.91 5.25 -26.61 -0.14 -2.05 16 15 C 0.15 2.76 6.52 -3.71 -0.02 2.73 16 16 N -0.61 -14.05 2.77 -172.32 -0.48 -14.52 16 17 C -0.26 -7.20 10.03 -15.06 -0.15 -7.35 16 18 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 19 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 20 N -0.91 -27.81 13.97 55.49 0.78 -27.03 16 21 Si 0.88 22.28 24.35 -169.99 -4.14 18.14 16 22 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 23 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 24 H -0.27 -6.70 6.63 56.52 0.37 -6.33 16 25 C 0.13 2.69 4.20 -3.71 -0.02 2.67 16 26 C -0.13 -2.14 5.36 -26.62 -0.14 -2.29 16 27 C -0.10 -1.02 9.36 -39.59 -0.37 -1.39 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.10 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.10 0.62 8.08 -51.93 -0.42 0.20 16 38 H 0.40 3.28 7.65 -40.82 -0.31 2.97 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.61 7.15 -51.93 -0.37 0.24 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.02 0.50 7.08 -51.92 -0.37 0.13 16 48 H 0.07 1.73 4.50 -51.93 -0.23 1.49 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 51 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -33.77 401.18 -10.30 -44.07 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.91 Total: 0.16 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -3.37 Total: -10.08 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.02 Total: -49.68 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.77 -10.30 -44.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155654689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.388 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds