Wall clock time and date at job start Tue Mar 31 2020 16:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.46916 * 2 1 4 4 C 1.38259 * 120.00028 * 270.01964 * 3 2 1 5 5 C 1.38216 * 120.00057 * 179.97438 * 4 3 2 6 6 C 1.38256 * 119.99843 * 0.02562 * 5 4 3 7 7 C 1.38217 * 119.99898 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99840 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47119 * 269.95812 * 8 7 6 10 10 O 1.21281 * 120.00053 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99781 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00010 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47510 * 179.97438 * 12 11 9 14 14 C 1.53041 * 109.46203 * 295.03283 * 13 12 11 15 15 C 1.53192 * 109.31244 * 178.60093 * 14 13 12 16 16 N 1.46920 * 108.76952 * 54.65259 * 15 14 13 17 17 C 1.36932 * 120.63243 * 126.40258 * 16 15 14 18 18 H 1.08001 * 120.00445 * 332.60994 * 17 16 15 19 19 C 1.38812 * 120.00110 * 152.61274 * 17 16 15 20 20 N 1.31617 * 120.00460 * 159.34704 * 19 17 16 21 21 Si 1.86804 * 119.99841 * 339.34243 * 19 17 16 22 22 H 1.48500 * 109.46970 * 92.94657 * 21 19 17 23 23 H 1.48504 * 109.47241 * 212.94663 * 21 19 17 24 24 H 1.48501 * 109.46990 * 332.94607 * 21 19 17 25 25 C 1.46930 * 118.73782 * 306.38822 * 16 15 14 26 26 C 1.53039 * 109.46486 * 174.97246 * 13 12 11 27 27 C 1.38211 * 120.00192 * 90.00327 * 3 2 1 28 28 H 1.08999 * 109.47478 * 60.00187 * 1 2 3 29 29 H 1.09004 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47441 * 299.99892 * 1 2 3 31 31 H 1.09006 * 109.47045 * 240.00052 * 2 1 3 32 32 H 1.08999 * 109.47478 * 119.99813 * 2 1 3 33 33 H 1.07999 * 119.99934 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.99940 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.00082 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.47307 * 29.95200 * 8 7 6 37 37 H 1.08993 * 109.47103 * 149.95441 * 8 7 6 38 38 H 0.97000 * 120.00520 * 359.97438 * 11 9 8 39 39 H 1.09007 * 109.47148 * 300.00496 * 12 11 9 40 40 H 1.09005 * 109.47163 * 59.99916 * 12 11 9 41 41 H 1.09007 * 109.45916 * 55.00334 * 13 12 11 42 42 H 1.09005 * 109.49300 * 298.56181 * 14 13 12 43 43 H 1.08998 * 109.50081 * 58.65854 * 14 13 12 44 44 H 1.09000 * 109.59644 * 294.85842 * 15 14 13 45 45 H 1.09003 * 109.70169 * 174.50228 * 15 14 13 46 46 H 0.97000 * 120.00099 * 179.97438 * 20 19 17 47 47 H 1.09007 * 109.58205 * 293.81609 * 25 16 15 48 48 H 1.09001 * 109.70427 * 173.46669 * 25 16 15 49 49 H 1.09001 * 109.49623 * 301.34149 * 26 13 12 50 50 H 1.09007 * 109.49333 * 61.43175 * 26 13 12 51 51 H 1.08003 * 119.99251 * 359.72315 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2623 2.0728 -1.1974 5 6 2.7224 3.3761 -1.1974 6 6 2.9532 4.0277 0.0000 7 6 2.7243 3.3756 1.1969 8 6 2.9764 4.0856 2.5020 9 6 4.3999 3.8484 2.9362 10 8 5.1370 3.1692 2.2533 11 7 4.8538 4.3911 4.0833 12 6 6.2375 4.1600 4.5057 13 6 6.4939 4.8820 5.8299 14 6 6.3818 6.3934 5.6167 15 6 6.6045 7.1112 6.9516 16 7 7.8898 6.6751 7.5142 17 6 8.8384 7.5924 7.8801 18 1 8.8769 8.5542 7.3904 19 6 9.7507 7.2859 8.8804 20 7 10.8832 7.9513 8.9646 21 14 9.3711 5.9293 10.1071 22 1 9.9445 4.6483 9.6217 23 1 9.9673 6.2712 11.4235 24 1 7.8997 5.7899 10.2513 25 6 8.1378 5.2361 7.6770 26 6 7.8975 4.5393 6.3342 27 6 2.2626 2.0724 1.1969 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0816 1.5639 -2.1327 34 1 2.9017 3.8854 -2.1327 35 1 3.3124 5.0462 0.0000 36 1 2.8096 5.1549 2.3721 37 1 2.2959 3.7016 3.2619 38 1 4.2645 4.9346 4.6293 39 1 6.4038 3.0907 4.6362 40 1 6.9182 4.5434 3.7455 41 1 5.7558 4.5635 6.5661 42 1 7.1363 6.7165 4.8993 43 1 5.3896 6.6344 5.2353 44 1 5.7992 6.8587 7.6413 45 1 6.6231 8.1891 6.7905 46 1 11.5206 7.7374 9.6639 47 1 7.4574 4.8306 8.4260 48 1 9.1682 5.0743 7.9936 49 1 7.9843 3.4604 6.4635 50 1 8.6376 4.8800 5.6100 51 1 2.0784 1.5647 2.1322 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155654689.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:16 Heat of formation + Delta-G solvation = -32.843309 kcal Electronic energy + Delta-G solvation = -27480.864210 eV Core-core repulsion = 23764.701341 eV Total energy + Delta-G solvation = -3716.162870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.12680 -40.11530 -39.39675 -36.47861 -35.30303 -34.51403 -33.41151 -32.76225 -31.86819 -30.41321 -29.30367 -27.78011 -25.48582 -24.78672 -24.29598 -23.12668 -22.70450 -21.82329 -21.05670 -20.64678 -18.79674 -18.02542 -17.48990 -17.24365 -16.85704 -16.76740 -16.15618 -15.88730 -15.78447 -15.35728 -15.14823 -15.08268 -14.69528 -14.63627 -14.50024 -14.39719 -14.03970 -13.89037 -13.77688 -13.67258 -13.39936 -13.04441 -12.90072 -12.74517 -12.58952 -12.54001 -12.24455 -12.13560 -12.11164 -11.74019 -11.68283 -11.62130 -11.58484 -11.30740 -11.19552 -10.93342 -10.65880 -10.04241 -9.66615 -9.48047 -8.91174 -8.16106 -5.47122 0.43990 0.52769 1.30523 1.41186 1.50624 1.69768 2.25917 2.42302 2.92469 3.06542 3.38553 3.69387 3.79715 3.84227 3.88015 3.94551 4.00693 4.11187 4.24880 4.30595 4.38658 4.40458 4.45249 4.51628 4.55514 4.58976 4.63956 4.64812 4.70860 4.75058 4.78130 4.80298 4.89707 5.01740 5.03256 5.09566 5.11737 5.17664 5.21031 5.22365 5.24401 5.28547 5.38917 5.45339 5.59202 5.61756 5.68145 5.74610 5.88112 6.13359 6.16004 6.62400 6.94210 7.32165 7.64929 8.04805 9.03947 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030689 B = 0.001907 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.168452 B =14680.944430 C =15057.880928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.127 4.127 6 C -0.129 4.129 7 C -0.076 4.076 8 C -0.096 4.096 9 C 0.511 3.489 10 O -0.584 6.584 11 N -0.715 5.715 12 C 0.136 3.864 13 C -0.078 4.078 14 C -0.118 4.118 15 C 0.141 3.859 16 N -0.622 5.622 17 C -0.248 4.248 18 H 0.049 0.951 19 C -0.040 4.040 20 N -0.960 5.960 21 Si 0.950 3.050 22 H -0.276 1.276 23 H -0.313 1.313 24 H -0.257 1.257 25 C 0.120 3.880 26 C -0.122 4.122 27 C -0.120 4.120 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.417 0.583 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.093 0.907 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.260 0.740 47 H 0.038 0.962 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.049 0.951 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.540 -14.011 -17.500 33.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.145 4.145 6 C -0.147 4.147 7 C -0.076 4.076 8 C -0.135 4.135 9 C 0.298 3.702 10 O -0.464 6.464 11 N -0.368 5.368 12 C 0.011 3.989 13 C -0.097 4.097 14 C -0.157 4.157 15 C 0.016 3.984 16 N -0.347 5.347 17 C -0.377 4.377 18 H 0.066 0.934 19 C -0.234 4.234 20 N -0.606 5.606 21 Si 0.779 3.221 22 H -0.203 1.203 23 H -0.242 1.242 24 H -0.181 1.181 25 C -0.005 4.005 26 C -0.161 4.161 27 C -0.138 4.138 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.254 0.746 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.068 0.932 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.904 -14.449 -17.895 33.900 hybrid contribution 0.727 0.175 1.039 1.280 sum -24.178 -14.274 -16.856 32.748 Atomic orbital electron populations 1.21712 0.93778 1.02383 1.02036 1.20581 0.96893 0.91603 1.03190 1.20140 0.98888 0.97076 0.93124 1.21275 1.00304 0.95174 0.98150 1.21370 0.99257 0.95311 0.98524 1.21227 1.00239 1.00736 0.92458 1.19516 0.98914 0.94690 0.94480 1.20739 0.92541 1.04158 0.96105 1.21098 0.90370 0.78466 0.80226 1.90720 1.59856 1.40760 1.55053 1.45940 1.13529 1.53338 1.24020 1.21210 0.82727 0.99603 0.95321 1.21170 0.97312 0.95387 0.95855 1.21955 1.01905 0.94442 0.97358 1.21147 0.85956 0.97668 0.93581 1.44503 1.14994 1.01023 1.74148 1.18870 1.07454 0.97769 1.13644 0.93355 1.25948 0.96311 1.01020 1.00123 1.69981 1.08776 1.46358 1.35479 0.85862 0.78894 0.79175 0.78195 1.20309 1.24203 1.18120 1.21380 0.98641 0.83976 0.96456 1.21895 0.96921 1.00165 0.97158 1.21060 1.00240 0.94238 0.98225 0.92614 0.91277 0.92799 0.90467 0.91079 0.84746 0.84557 0.85502 0.85379 0.85270 0.74595 0.92041 0.93315 0.89047 0.93776 0.88906 0.94000 0.92997 0.93068 0.94435 0.93722 0.90146 0.93186 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 71.98 0.71 -0.73 16 2 C -0.09 -1.10 6.06 29.85 0.18 -0.92 16 3 C -0.09 -1.60 5.13 -19.86 -0.10 -1.70 16 4 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 5 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 6 C -0.13 -2.40 9.70 22.27 0.22 -2.19 16 7 C -0.08 -1.40 4.37 -19.87 -0.09 -1.48 16 8 C -0.10 -1.29 5.83 29.10 0.17 -1.12 16 9 C 0.51 10.84 7.82 87.66 0.69 11.52 16 10 O -0.58 -18.47 16.03 -3.03 -0.05 -18.52 16 11 N -0.72 -12.81 5.27 -463.05 -2.44 -15.25 16 12 C 0.14 3.15 5.06 86.38 0.44 3.59 16 13 C -0.08 -1.94 2.19 -10.77 -0.02 -1.96 16 14 C -0.12 -3.15 5.25 30.67 0.16 -2.99 16 15 C 0.14 4.95 6.52 86.36 0.56 5.51 16 16 N -0.62 -28.35 2.77 -699.11 -1.94 -30.28 16 17 C -0.25 -14.03 10.03 84.03 0.84 -13.19 16 18 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 19 C -0.04 -2.33 5.23 84.86 0.44 -1.88 16 20 N -0.96 -60.91 13.97 21.65 0.30 -60.60 16 21 Si 0.95 46.45 24.35 68.60 1.67 48.12 16 22 H -0.28 -12.82 6.62 99.48 0.66 -12.16 16 23 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 24 H -0.26 -11.80 6.63 99.48 0.66 -11.14 16 25 C 0.12 4.89 4.20 86.36 0.36 5.25 16 26 C -0.12 -3.87 5.36 30.67 0.16 -3.70 16 27 C -0.12 -2.21 9.36 22.27 0.21 -2.00 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.88 8.09 -2.38 -0.02 0.86 16 32 H 0.07 0.90 8.09 -2.39 -0.02 0.89 16 33 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.13 1.09 8.09 -2.39 -0.02 1.07 16 37 H 0.13 1.03 8.08 -2.39 -0.02 1.01 16 38 H 0.42 4.78 7.65 -92.71 -0.71 4.07 16 39 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.09 1.76 7.15 -2.39 -0.02 1.74 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 46 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 47 H 0.04 1.44 7.08 -2.38 -0.02 1.42 16 48 H 0.04 2.07 4.50 -2.39 -0.01 2.05 16 49 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 51 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -76.49 401.18 3.02 -73.47 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.09 Total: 15.04 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 5.38 Total: -11.97 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: -4.07 Total: -106.14 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.05 Total: -18.52 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.67 Total: 48.12 kcal Total: -76.49 3.02 -73.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155654689.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.627 kcal (2) G-P(sol) polarization free energy of solvation -76.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds