Wall clock time and date at job start Tue Mar 31 2020 16:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 113.01263 * 2 1 4 4 C 1.53949 * 113.74065 * 131.65759 * 2 1 3 5 5 N 1.47576 * 86.11329 * 137.95779 * 4 2 1 6 6 C 1.34784 * 134.49145 * 155.35911 * 5 4 2 7 7 O 1.21585 * 120.00117 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99991 * 359.97438 * 6 5 4 9 9 C 1.46497 * 119.99769 * 175.09766 * 8 6 5 10 10 H 1.08998 * 109.47121 * 326.59696 * 9 8 6 11 11 C 1.52990 * 109.47257 * 86.60188 * 9 8 6 12 12 C 1.50698 * 109.47295 * 185.71595 * 11 9 8 13 13 H 1.08000 * 120.00086 * 355.54923 * 12 11 9 14 14 C 1.37877 * 120.00054 * 175.55540 * 12 11 9 15 15 N 1.31519 * 120.00272 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00080 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47133 * 89.99584 * 16 14 12 18 18 H 1.48501 * 109.46973 * 209.99531 * 16 14 12 19 19 H 1.48497 * 109.46757 * 329.99785 * 16 14 12 20 20 C 1.50702 * 109.46658 * 206.60166 * 9 8 6 21 21 C 1.38241 * 119.99910 * 319.72354 * 20 9 8 22 22 C 1.38240 * 119.99687 * 179.79098 * 21 20 9 23 23 C 1.38233 * 120.00183 * 0.44391 * 22 21 20 24 24 C 1.38237 * 119.99708 * 359.80947 * 23 22 21 25 25 C 1.38233 * 120.00345 * 359.97438 * 24 23 22 26 26 C 1.47581 * 91.01788 * 335.35892 * 5 4 2 27 27 C 1.52992 * 113.76911 * 270.34044 * 26 5 4 28 28 C 1.53006 * 113.76921 * 138.94292 * 26 5 4 29 29 H 1.08992 * 109.47716 * 307.84599 * 1 2 3 30 30 H 1.09000 * 109.47221 * 67.85134 * 1 2 3 31 31 H 1.09007 * 109.46933 * 187.83811 * 1 2 3 32 32 H 1.08998 * 109.46660 * 172.15441 * 3 2 1 33 33 H 1.09000 * 109.46782 * 292.15621 * 3 2 1 34 34 H 1.08996 * 109.47162 * 52.15909 * 3 2 1 35 35 H 1.08998 * 113.76707 * 252.25581 * 4 2 1 36 36 H 1.08995 * 113.77090 * 23.65864 * 4 2 1 37 37 H 0.96995 * 119.99608 * 355.09735 * 8 6 5 38 38 H 1.09003 * 109.47504 * 305.71719 * 11 9 8 39 39 H 1.09003 * 109.47418 * 65.71440 * 11 9 8 40 40 H 0.96997 * 120.00160 * 180.02562 * 15 14 12 41 41 H 1.07997 * 119.99765 * 0.02562 * 21 20 9 42 42 H 1.07999 * 119.99990 * 180.27600 * 22 21 20 43 43 H 1.07999 * 120.00071 * 179.83560 * 23 22 21 44 44 H 1.08010 * 119.99866 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.99942 * 179.97438 * 25 24 23 46 46 H 1.09008 * 109.47109 * 156.49419 * 27 26 5 47 47 H 1.09000 * 109.47226 * 276.48944 * 27 26 5 48 48 H 1.08994 * 109.47516 * 36.49414 * 27 26 5 49 49 H 1.09002 * 109.47192 * 323.50637 * 28 26 5 50 50 H 1.08992 * 109.47225 * 83.50674 * 28 26 5 51 51 H 1.09005 * 109.46722 * 203.50829 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1498 -0.9367 1.0529 5 7 3.1104 -1.3199 0.0002 6 6 4.3623 -1.8193 0.0002 7 8 4.9269 -2.0450 -1.0527 8 7 4.9884 -2.0684 1.1675 9 6 6.3052 -2.7104 1.1698 10 1 6.3691 -3.4116 0.3378 11 6 7.3927 -1.6443 1.0231 12 6 8.7361 -2.3128 0.8845 13 1 8.8167 -3.3863 0.9715 14 6 9.8625 -1.5540 0.6468 15 7 9.7644 -0.2468 0.5404 16 14 11.5277 -2.3827 0.4743 17 1 11.7632 -2.7289 -0.9505 18 1 12.5916 -1.4578 0.9413 19 1 11.5521 -3.6201 1.2949 20 6 6.5003 -3.4517 2.4674 21 6 6.0698 -2.8907 3.6553 22 6 6.2448 -3.5726 4.8450 23 6 6.8585 -4.8112 4.8480 24 6 7.2936 -5.3697 3.6607 25 6 7.1146 -4.6899 2.4705 26 6 2.1498 -0.9367 -1.0527 27 6 1.2242 -2.0749 -1.4867 28 6 2.7888 -0.2015 -2.2325 29 1 -0.3634 0.6304 0.8114 30 1 -0.3634 0.3874 -0.9518 31 1 -0.3633 -1.0181 0.1402 32 1 3.2072 1.3447 0.1403 33 1 1.9134 1.8942 -0.9518 34 1 1.6899 1.9892 0.8115 35 1 2.6049 -0.4128 1.8933 36 1 1.4903 -1.7475 1.3621 37 1 4.5671 -1.8227 2.0058 38 1 7.1936 -1.0417 0.1369 39 1 7.3949 -1.0037 1.9050 40 1 10.5568 0.2870 0.3728 41 1 5.5934 -1.9215 3.6533 42 1 5.9045 -3.1364 5.7725 43 1 6.9976 -5.3427 5.7778 44 1 7.7735 -6.3374 3.6631 45 1 7.4550 -5.1262 1.5430 46 1 0.3145 -1.6585 -1.9195 47 1 1.7304 -2.6918 -2.2293 48 1 0.9682 -2.6854 -0.6208 49 1 3.5849 0.4478 -1.8680 50 1 3.2037 -0.9276 -2.9315 51 1 2.0331 0.3993 -2.7386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160538469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:46 Heat of formation + Delta-G solvation = 18.928614 kcal Electronic energy + Delta-G solvation = -29394.897204 eV Core-core repulsion = 25680.979333 eV Total energy + Delta-G solvation = -3713.917871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05179 -39.23355 -37.95894 -34.92285 -32.89735 -32.30079 -31.61586 -30.65921 -30.30813 -28.84698 -28.51833 -26.52513 -25.94135 -24.51423 -22.71272 -22.33033 -22.00085 -20.24275 -19.41230 -18.05573 -16.90765 -16.68695 -15.98734 -15.89327 -15.53735 -15.09487 -14.76566 -14.60112 -14.49520 -13.92694 -13.74177 -13.58078 -13.47774 -12.93453 -12.73474 -12.66219 -12.55729 -12.41480 -12.38676 -12.10679 -12.03255 -11.85575 -11.70512 -11.61541 -11.45672 -11.20599 -11.05563 -10.89859 -10.80560 -10.68038 -10.60136 -10.12146 -10.01603 -9.80891 -9.47089 -9.05608 -8.56072 -8.45183 -8.33768 -8.25553 -7.91214 -5.93398 -3.94523 1.83807 1.87000 2.79296 3.37165 3.42774 3.45771 3.75809 4.04248 4.20939 4.36227 4.53936 4.72939 4.79878 4.96484 4.99974 5.16404 5.28479 5.30407 5.32279 5.39610 5.41894 5.44308 5.49347 5.54994 5.56640 5.60784 5.71116 5.73053 5.78198 5.87532 5.93071 5.93667 5.94906 6.01465 6.09874 6.15052 6.27275 6.31026 6.42019 6.49943 6.55521 6.81898 6.87243 6.91982 7.00917 7.23362 7.45656 7.55128 7.76380 7.86867 8.06609 8.43483 8.53635 9.08728 9.20512 9.68021 11.18354 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003874 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.887970 B = 7225.281080 C = 8756.830782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C -0.126 4.126 4 C 0.105 3.895 5 N -0.657 5.657 6 C 0.727 3.273 7 O -0.578 6.578 8 N -0.737 5.737 9 C 0.199 3.801 10 H 0.086 0.914 11 C 0.026 3.974 12 C -0.511 4.511 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.889 3.111 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.047 4.047 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.136 4.136 24 C -0.121 4.121 25 C -0.099 4.099 26 C 0.186 3.814 27 C -0.147 4.147 28 C -0.144 4.144 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.385 0.615 38 H 0.032 0.968 39 H 0.013 0.987 40 H 0.259 0.741 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.257 -1.615 4.004 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 C -0.183 4.183 4 C -0.018 4.018 5 N -0.398 5.398 6 C 0.430 3.570 7 O -0.454 6.454 8 N -0.390 5.390 9 C 0.096 3.904 10 H 0.104 0.896 11 C -0.012 4.012 12 C -0.550 4.550 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.048 4.048 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.154 4.154 24 C -0.139 4.139 25 C -0.117 4.117 26 C 0.101 3.899 27 C -0.206 4.206 28 C -0.201 4.201 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.218 0.782 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.140 0.860 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.465 -1.745 3.182 19.800 hybrid contribution 1.029 -0.263 0.487 1.168 sum -18.436 -2.008 3.668 18.904 Atomic orbital electron populations 1.21739 0.93374 1.02120 1.02134 1.22478 0.95339 0.95498 0.95928 1.21562 1.01392 0.93459 1.01924 1.23205 0.89873 0.95968 0.92776 1.49311 1.11827 1.69432 1.09238 1.15446 0.79373 0.77512 0.84632 1.90934 1.65350 1.58543 1.30598 1.45403 1.21261 1.65905 1.06461 1.20168 0.81188 0.95546 0.93518 0.89616 1.19421 0.91241 0.92813 0.97754 1.21094 0.91744 0.93516 1.48636 0.92368 1.24948 0.99017 0.94763 0.95400 1.69973 1.29216 1.04523 1.49633 0.86636 0.83975 0.79347 0.78346 1.20660 1.21330 1.19822 1.19987 0.96008 0.93770 0.94986 1.20815 1.01331 0.99239 0.92291 1.20967 1.00224 0.95361 0.97441 1.20968 1.00511 0.96278 0.97614 1.21040 1.00285 0.99835 0.92731 1.20986 0.98186 0.94321 0.98254 1.21905 0.86012 0.92155 0.89867 1.21969 0.98934 0.97811 1.01848 1.21859 1.00537 1.00571 0.97158 0.92204 0.92094 0.92058 0.91768 0.91933 0.92291 0.90566 0.90412 0.78168 0.94940 0.96860 0.93125 0.86906 0.86775 0.86898 0.86634 0.86033 0.91064 0.91813 0.92144 0.91478 0.91639 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.06 37.16 0.30 -0.62 16 2 C -0.09 -0.86 1.31 -153.58 -0.20 -1.06 16 3 C -0.13 -1.23 7.90 37.16 0.29 -0.94 16 4 C 0.11 1.10 7.19 -2.98 -0.02 1.08 16 5 N -0.66 -9.68 3.15 -168.91 -0.53 -10.21 16 6 C 0.73 14.26 8.63 -86.91 -0.75 13.51 16 7 O -0.58 -13.96 16.20 5.29 0.09 -13.88 16 8 N -0.74 -13.75 5.02 -59.82 -0.30 -14.05 16 9 C 0.20 4.33 2.19 -69.09 -0.15 4.18 16 10 H 0.09 2.04 7.46 -51.93 -0.39 1.65 16 11 C 0.03 0.69 4.73 -27.89 -0.13 0.55 16 12 C -0.51 -14.62 8.64 -34.44 -0.30 -14.92 16 13 H 0.06 1.60 6.43 -52.49 -0.34 1.26 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 16 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.05 -0.90 4.49 -104.62 -0.47 -1.37 16 21 C -0.12 -2.01 9.06 -39.58 -0.36 -2.37 16 22 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 23 C -0.14 -1.99 10.05 -39.58 -0.40 -2.38 16 24 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 25 C -0.10 -1.82 8.63 -39.58 -0.34 -2.16 16 26 C 0.19 2.25 1.49 -130.76 -0.19 2.05 16 27 C -0.15 -1.51 8.07 37.15 0.30 -1.21 16 28 C -0.14 -1.89 7.63 37.16 0.28 -1.60 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 7.01 -51.93 -0.36 0.02 16 32 H 0.06 0.80 7.71 -51.93 -0.40 0.40 16 33 H 0.06 0.56 7.57 -51.93 -0.39 0.17 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.08 0.69 7.64 -51.93 -0.40 0.30 16 37 H 0.38 6.06 6.51 -40.82 -0.27 5.80 16 38 H 0.03 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.01 0.37 8.13 -51.93 -0.42 -0.05 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 41 H 0.11 1.75 6.91 -52.49 -0.36 1.39 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 45 H 0.12 2.21 7.83 -52.49 -0.41 1.80 16 46 H 0.07 0.56 7.41 -51.92 -0.38 0.17 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.59 7.35 -51.93 -0.38 0.21 16 49 H 0.07 1.02 7.26 -51.93 -0.38 0.65 16 50 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -34.80 404.86 -10.63 -45.43 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.66 Total: 6.30 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -3.03 Total: -10.12 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.10 Total: -51.13 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.80 -10.63 -45.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160538469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.354 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds