Wall clock time and date at job start Tue Mar 31 2020 16:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 113.01263 * 2 1 4 4 C 1.53949 * 113.74065 * 131.65759 * 2 1 3 5 5 N 1.47576 * 86.11329 * 137.95779 * 4 2 1 6 6 C 1.34784 * 134.49145 * 155.35911 * 5 4 2 7 7 O 1.21585 * 120.00117 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99991 * 359.97438 * 6 5 4 9 9 C 1.46497 * 119.99769 * 175.09766 * 8 6 5 10 10 H 1.08998 * 109.47121 * 326.59696 * 9 8 6 11 11 C 1.52990 * 109.47257 * 86.60188 * 9 8 6 12 12 C 1.50698 * 109.47295 * 185.71595 * 11 9 8 13 13 H 1.08000 * 120.00086 * 355.54923 * 12 11 9 14 14 C 1.37877 * 120.00054 * 175.55540 * 12 11 9 15 15 N 1.31519 * 120.00272 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00080 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47133 * 89.99584 * 16 14 12 18 18 H 1.48501 * 109.46973 * 209.99531 * 16 14 12 19 19 H 1.48497 * 109.46757 * 329.99785 * 16 14 12 20 20 C 1.50702 * 109.46658 * 206.60166 * 9 8 6 21 21 C 1.38241 * 119.99910 * 319.72354 * 20 9 8 22 22 C 1.38240 * 119.99687 * 179.79098 * 21 20 9 23 23 C 1.38233 * 120.00183 * 0.44391 * 22 21 20 24 24 C 1.38237 * 119.99708 * 359.80947 * 23 22 21 25 25 C 1.38233 * 120.00345 * 359.97438 * 24 23 22 26 26 C 1.47581 * 91.01788 * 335.35892 * 5 4 2 27 27 C 1.52992 * 113.76911 * 270.34044 * 26 5 4 28 28 C 1.53006 * 113.76921 * 138.94292 * 26 5 4 29 29 H 1.08992 * 109.47716 * 307.84599 * 1 2 3 30 30 H 1.09000 * 109.47221 * 67.85134 * 1 2 3 31 31 H 1.09007 * 109.46933 * 187.83811 * 1 2 3 32 32 H 1.08998 * 109.46660 * 172.15441 * 3 2 1 33 33 H 1.09000 * 109.46782 * 292.15621 * 3 2 1 34 34 H 1.08996 * 109.47162 * 52.15909 * 3 2 1 35 35 H 1.08998 * 113.76707 * 252.25581 * 4 2 1 36 36 H 1.08995 * 113.77090 * 23.65864 * 4 2 1 37 37 H 0.96995 * 119.99608 * 355.09735 * 8 6 5 38 38 H 1.09003 * 109.47504 * 305.71719 * 11 9 8 39 39 H 1.09003 * 109.47418 * 65.71440 * 11 9 8 40 40 H 0.96997 * 120.00160 * 180.02562 * 15 14 12 41 41 H 1.07997 * 119.99765 * 0.02562 * 21 20 9 42 42 H 1.07999 * 119.99990 * 180.27600 * 22 21 20 43 43 H 1.07999 * 120.00071 * 179.83560 * 23 22 21 44 44 H 1.08010 * 119.99866 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.99942 * 179.97438 * 25 24 23 46 46 H 1.09008 * 109.47109 * 156.49419 * 27 26 5 47 47 H 1.09000 * 109.47226 * 276.48944 * 27 26 5 48 48 H 1.08994 * 109.47516 * 36.49414 * 27 26 5 49 49 H 1.09002 * 109.47192 * 323.50637 * 28 26 5 50 50 H 1.08992 * 109.47225 * 83.50674 * 28 26 5 51 51 H 1.09005 * 109.46722 * 203.50829 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1498 -0.9367 1.0529 5 7 3.1104 -1.3199 0.0002 6 6 4.3623 -1.8193 0.0002 7 8 4.9269 -2.0450 -1.0527 8 7 4.9884 -2.0684 1.1675 9 6 6.3052 -2.7104 1.1698 10 1 6.3691 -3.4116 0.3378 11 6 7.3927 -1.6443 1.0231 12 6 8.7361 -2.3128 0.8845 13 1 8.8167 -3.3863 0.9715 14 6 9.8625 -1.5540 0.6468 15 7 9.7644 -0.2468 0.5404 16 14 11.5277 -2.3827 0.4743 17 1 11.7632 -2.7289 -0.9505 18 1 12.5916 -1.4578 0.9413 19 1 11.5521 -3.6201 1.2949 20 6 6.5003 -3.4517 2.4674 21 6 6.0698 -2.8907 3.6553 22 6 6.2448 -3.5726 4.8450 23 6 6.8585 -4.8112 4.8480 24 6 7.2936 -5.3697 3.6607 25 6 7.1146 -4.6899 2.4705 26 6 2.1498 -0.9367 -1.0527 27 6 1.2242 -2.0749 -1.4867 28 6 2.7888 -0.2015 -2.2325 29 1 -0.3634 0.6304 0.8114 30 1 -0.3634 0.3874 -0.9518 31 1 -0.3633 -1.0181 0.1402 32 1 3.2072 1.3447 0.1403 33 1 1.9134 1.8942 -0.9518 34 1 1.6899 1.9892 0.8115 35 1 2.6049 -0.4128 1.8933 36 1 1.4903 -1.7475 1.3621 37 1 4.5671 -1.8227 2.0058 38 1 7.1936 -1.0417 0.1369 39 1 7.3949 -1.0037 1.9050 40 1 10.5568 0.2870 0.3728 41 1 5.5934 -1.9215 3.6533 42 1 5.9045 -3.1364 5.7725 43 1 6.9976 -5.3427 5.7778 44 1 7.7735 -6.3374 3.6631 45 1 7.4550 -5.1262 1.5430 46 1 0.3145 -1.6585 -1.9195 47 1 1.7304 -2.6918 -2.2293 48 1 0.9682 -2.6854 -0.6208 49 1 3.5849 0.4478 -1.8680 50 1 3.2037 -0.9276 -2.9315 51 1 2.0331 0.3993 -2.7386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160538469.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:45 Heat of formation + Delta-G solvation = -2.064906 kcal Electronic energy + Delta-G solvation = -29395.807551 eV Core-core repulsion = 25680.979333 eV Total energy + Delta-G solvation = -3714.828218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.14363 -40.63440 -39.37565 -36.62161 -34.90193 -33.65191 -32.62694 -31.97768 -31.59664 -30.36721 -29.70297 -27.64702 -26.91038 -26.21027 -24.03571 -23.75378 -23.39379 -21.61183 -21.01314 -19.24626 -18.64345 -17.97119 -17.51893 -17.11725 -16.78443 -16.48598 -16.23759 -16.04465 -15.81842 -15.28871 -15.05208 -14.89908 -14.54813 -14.49874 -14.20497 -14.16682 -13.88205 -13.43084 -13.37263 -13.25746 -13.17109 -12.95628 -12.83013 -12.77852 -12.64966 -12.61802 -12.54664 -12.48615 -12.18816 -12.03461 -11.88729 -11.77136 -11.63326 -11.36067 -11.03017 -10.85610 -10.59023 -10.13576 -9.72283 -9.56666 -9.37408 -8.21019 -6.30618 0.52866 0.58909 1.34671 1.37822 1.47677 1.53921 2.22680 2.38976 2.89903 3.03511 3.13810 3.24663 3.82428 3.84713 3.91591 3.99122 4.02863 4.22641 4.22924 4.30054 4.33438 4.38672 4.46507 4.58176 4.68371 4.71383 4.77056 4.79433 4.82027 4.84690 4.86117 4.87305 5.05764 5.08188 5.10871 5.13616 5.15676 5.21172 5.27019 5.29327 5.33366 5.41095 5.45984 5.56436 5.59463 5.64723 5.67462 5.73747 5.90127 6.19547 6.21573 6.34474 6.82325 7.12130 7.36703 7.68450 8.91802 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003874 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.887970 B = 7225.281080 C = 8756.830782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.102 3.898 5 N -0.661 5.661 6 C 0.717 3.283 7 O -0.638 6.638 8 N -0.728 5.728 9 C 0.218 3.782 10 H 0.053 0.947 11 C 0.043 3.957 12 C -0.525 4.525 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.961 3.039 17 H -0.277 1.277 18 H -0.279 1.279 19 H -0.257 1.257 20 C -0.073 4.073 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.123 4.123 26 C 0.170 3.830 27 C -0.141 4.141 28 C -0.140 4.140 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.400 0.600 38 H -0.023 1.023 39 H -0.006 1.006 40 H 0.262 0.738 41 H 0.120 0.880 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.143 0.857 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.039 0.961 48 H 0.069 0.931 49 H 0.035 0.965 50 H 0.035 0.965 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.438 -2.683 6.974 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.074 4.074 3 C -0.183 4.183 4 C -0.020 4.020 5 N -0.401 5.401 6 C 0.420 3.580 7 O -0.519 6.519 8 N -0.382 5.382 9 C 0.113 3.887 10 H 0.071 0.929 11 C 0.005 3.995 12 C -0.563 4.563 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.785 3.215 17 H -0.203 1.203 18 H -0.205 1.205 19 H -0.181 1.181 20 C -0.074 4.074 21 C -0.146 4.146 22 C -0.134 4.134 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.142 4.142 26 C 0.086 3.914 27 C -0.199 4.199 28 C -0.198 4.198 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.236 0.764 38 H -0.004 1.004 39 H 0.012 0.988 40 H 0.070 0.930 41 H 0.138 0.862 42 H 0.169 0.831 43 H 0.171 0.829 44 H 0.160 0.840 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.054 0.946 50 H 0.055 0.945 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.726 -2.800 6.191 22.764 hybrid contribution 1.631 0.119 -0.420 1.688 sum -20.095 -2.681 5.772 21.079 Atomic orbital electron populations 1.21736 0.90007 1.03451 1.03538 1.22377 0.97527 0.94103 0.93344 1.21572 0.99112 0.94370 1.03286 1.23609 0.88827 0.97069 0.92478 1.49519 1.10765 1.67369 1.12422 1.15782 0.80922 0.77506 0.83828 1.90874 1.67402 1.61112 1.32544 1.45134 1.20294 1.65674 1.07137 1.19542 0.81059 0.93517 0.94574 0.92871 1.19140 0.93079 0.93256 0.94075 1.21486 0.92656 0.94021 1.48184 0.91622 1.25936 1.03464 0.95368 0.94925 1.70127 1.30479 1.06250 1.50726 0.85501 0.78613 0.78782 0.78556 1.20279 1.20481 1.18130 1.19788 0.98734 0.94680 0.94203 1.20994 1.01475 0.99808 0.92365 1.21391 0.99023 0.95280 0.97733 1.21467 0.98412 0.95990 0.98567 1.21370 0.99836 1.00679 0.92058 1.21071 0.99230 0.94661 0.99247 1.22386 0.85664 0.93660 0.89695 1.21951 0.99335 0.96869 1.01722 1.21824 1.00591 0.99857 0.97487 0.90522 0.90942 0.90871 0.95569 0.91180 0.89993 0.89895 0.87676 0.76361 1.00428 0.98806 0.92972 0.86219 0.83147 0.82948 0.83966 0.87362 0.87650 0.94204 0.91189 0.94628 0.94549 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 8.06 71.98 0.58 -0.61 16 2 C -0.07 -1.23 1.31 -51.52 -0.07 -1.30 16 3 C -0.13 -2.36 7.90 71.99 0.57 -1.79 16 4 C 0.10 1.98 7.19 86.48 0.62 2.60 16 5 N -0.66 -20.32 3.15 -806.57 -2.54 -22.86 16 6 C 0.72 30.58 8.63 179.05 1.55 32.12 16 7 O -0.64 -34.25 16.20 -3.98 -0.06 -34.31 16 8 N -0.73 -29.30 5.02 -461.42 -2.31 -31.62 16 9 C 0.22 10.29 2.19 44.24 0.10 10.38 16 10 H 0.05 2.81 7.46 -2.39 -0.02 2.79 16 11 C 0.04 2.48 4.73 29.84 0.14 2.62 16 12 C -0.53 -31.68 8.64 25.60 0.22 -31.46 16 13 H 0.07 3.78 6.43 -2.91 -0.02 3.76 16 14 C 0.00 0.02 5.46 84.65 0.46 0.48 16 15 N -0.94 -60.51 13.29 21.45 0.28 -60.23 16 16 Si 0.96 46.93 29.54 68.60 2.03 48.95 16 17 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 C -0.07 -2.92 4.49 -19.86 -0.09 -3.01 16 21 C -0.13 -4.26 9.06 22.27 0.20 -4.06 16 22 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16 23 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 24 C -0.12 -3.58 10.05 22.27 0.22 -3.36 16 25 C -0.12 -4.61 8.63 22.27 0.19 -4.42 16 26 C 0.17 4.11 1.49 3.70 0.01 4.12 16 27 C -0.14 -2.71 8.07 71.98 0.58 -2.13 16 28 C -0.14 -3.93 7.63 71.98 0.55 -3.38 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.55 7.01 -2.38 -0.02 0.54 16 32 H 0.03 0.68 7.71 -2.39 -0.02 0.66 16 33 H 0.07 1.19 7.57 -2.39 -0.02 1.17 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 36 H 0.11 1.54 7.64 -2.39 -0.02 1.52 16 37 H 0.40 13.19 6.51 -92.71 -0.60 12.59 16 38 H -0.02 -1.54 8.14 -2.39 -0.02 -1.56 16 39 H -0.01 -0.38 8.13 -2.39 -0.02 -0.40 16 40 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 41 H 0.12 3.68 6.91 -2.91 -0.02 3.66 16 42 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 43 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 44 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 45 H 0.11 4.18 7.83 -2.91 -0.02 4.15 16 46 H 0.10 1.30 7.41 -2.38 -0.02 1.29 16 47 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.07 1.22 7.35 -2.39 -0.02 1.21 16 49 H 0.03 1.20 7.26 -2.39 -0.02 1.18 16 50 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.10 1.95 8.06 -2.38 -0.02 1.93 16 Total: -1.00 -84.98 404.86 3.97 -81.01 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.30 Total: 28.10 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 6.28 Total: -9.04 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.57 Total: -114.70 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.06 Total: -34.31 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -84.98 3.97 -81.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160538469.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.943 kcal (2) G-P(sol) polarization free energy of solvation -84.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds