Wall clock time and date at job start Tue Mar 31 2020 16:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 113.28574 * 2 1 4 4 C 1.53501 * 114.20168 * 133.06852 * 2 1 3 5 5 N 1.47063 * 87.98468 * 87.52038 * 4 2 1 6 6 C 1.34784 * 136.05412 * 207.08216 * 5 4 2 7 7 O 1.21586 * 120.00185 * 179.97438 * 6 5 4 8 8 N 1.34782 * 119.99763 * 0.02562 * 6 5 4 9 9 C 1.46502 * 119.99717 * 175.03959 * 8 6 5 10 10 H 1.09004 * 109.47089 * 38.65746 * 9 8 6 11 11 C 1.52996 * 109.47252 * 278.65371 * 9 8 6 12 12 C 1.50700 * 109.47305 * 174.21188 * 11 9 8 13 13 H 1.08003 * 119.99399 * 354.92503 * 12 11 9 14 14 C 1.37879 * 120.00132 * 174.65245 * 12 11 9 15 15 N 1.31509 * 120.00049 * 180.27430 * 14 12 11 16 16 Si 1.86800 * 119.99945 * 0.27344 * 14 12 11 17 17 H 1.48502 * 109.47181 * 90.00003 * 16 14 12 18 18 H 1.48495 * 109.47156 * 210.00416 * 16 14 12 19 19 H 1.48503 * 109.46885 * 330.00070 * 16 14 12 20 20 C 1.50698 * 109.46811 * 158.65057 * 9 8 6 21 21 C 1.38239 * 119.99749 * 39.73406 * 20 9 8 22 22 C 1.38240 * 119.99451 * 179.78422 * 21 20 9 23 23 C 1.38236 * 120.00165 * 0.43872 * 22 21 20 24 24 C 1.38235 * 120.00050 * 359.81070 * 23 22 21 25 25 C 1.38234 * 120.00006 * 359.97438 * 24 23 22 26 26 C 1.47057 * 87.88750 * 27.33967 * 5 4 2 27 27 C 1.53001 * 113.46746 * 87.44200 * 26 5 4 28 28 C 1.53005 * 113.46899 * 217.87999 * 26 5 4 29 29 H 1.08999 * 109.47323 * 306.44140 * 1 2 3 30 30 H 1.09003 * 109.46996 * 66.43740 * 1 2 3 31 31 H 1.08994 * 109.47428 * 186.43801 * 1 2 3 32 32 H 1.09003 * 109.46774 * 173.56007 * 3 2 1 33 33 H 1.09004 * 109.46982 * 293.56096 * 3 2 1 34 34 H 1.09005 * 109.46728 * 53.56156 * 3 2 1 35 35 H 1.08998 * 113.46887 * 332.73394 * 4 2 1 36 36 H 1.09002 * 113.46095 * 202.29585 * 4 2 1 37 37 H 0.96995 * 120.00341 * 355.03425 * 8 6 5 38 38 H 1.09010 * 109.46998 * 54.20986 * 11 9 8 39 39 H 1.08999 * 109.47320 * 294.21324 * 11 9 8 40 40 H 0.96992 * 120.00107 * 179.97438 * 15 14 12 41 41 H 1.07989 * 120.00185 * 359.97438 * 21 20 9 42 42 H 1.07997 * 119.99864 * 180.26681 * 22 21 20 43 43 H 1.08003 * 120.00056 * 179.83526 * 23 22 21 44 44 H 1.08000 * 120.00126 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.00065 * 180.02562 * 25 24 23 46 46 H 1.08996 * 109.47295 * 79.50627 * 27 26 5 47 47 H 1.09003 * 109.47326 * 199.50136 * 27 26 5 48 48 H 1.08999 * 109.46820 * 319.50257 * 27 26 5 49 49 H 1.08996 * 109.46963 * 40.48975 * 28 26 5 50 50 H 1.08996 * 109.47004 * 160.49858 * 28 26 5 51 51 H 1.09004 * 109.46568 * 280.49407 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1348 1.4054 0.0000 4 6 2.1593 -0.9561 1.0228 5 7 2.0801 -2.0144 0.0047 6 6 1.9798 -3.3585 0.0079 7 8 1.9337 -3.9671 -1.0437 8 7 1.9296 -4.0277 1.1767 9 6 1.7116 -5.4764 1.1825 10 1 2.2572 -5.9293 0.3546 11 6 0.2175 -5.7679 1.0287 12 6 0.0070 -7.2538 0.8919 13 1 0.8578 -7.9162 0.8301 14 6 -1.2716 -7.7681 0.8513 15 7 -1.4553 -9.0653 0.7373 16 14 -2.7431 -6.6223 0.9582 17 1 -3.1383 -6.1954 -0.4081 18 1 -3.8772 -7.3319 1.6026 19 1 -2.3833 -5.4287 1.7651 20 6 2.2047 -6.0534 2.4844 21 6 1.9905 -5.3715 3.6677 22 6 2.4389 -5.9030 4.8624 23 6 3.1094 -7.1118 4.8728 24 6 3.3281 -7.7911 3.6889 25 6 2.8758 -7.2618 2.4947 26 6 2.1650 -0.9613 -1.0182 27 6 3.6013 -0.5902 -1.3928 28 6 1.2837 -1.2266 -2.2405 29 1 -0.3634 0.6104 0.8267 30 1 -0.3633 0.4108 -0.9420 31 1 -0.3634 -1.0211 0.1152 32 1 3.2165 1.3354 0.1153 33 1 1.9011 1.9015 -0.9420 34 1 1.7177 1.9804 0.8268 35 1 1.5266 -1.1406 1.8910 36 1 3.1810 -0.6903 1.2940 37 1 2.0380 -3.5503 2.0140 38 1 -0.1614 -5.2638 0.1396 39 1 -0.3158 -5.4047 1.9073 40 1 -2.3547 -9.4272 0.7092 41 1 1.4702 -4.4253 3.6591 42 1 2.2678 -5.3725 5.7874 43 1 3.4621 -7.5257 5.8060 44 1 3.8516 -8.7357 3.6970 45 1 3.0463 -7.7927 1.5698 46 1 3.9996 -1.3321 -2.0848 47 1 3.6111 0.3912 -1.8673 48 1 4.2164 -0.5650 -0.4933 49 1 0.3259 -1.6335 -1.9164 50 1 1.1186 -0.2933 -2.7788 51 1 1.7790 -1.9420 -2.8970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160538580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:49 Heat of formation + Delta-G solvation = 27.078452 kcal Electronic energy + Delta-G solvation = -29520.970104 eV Core-core repulsion = 25807.405637 eV Total energy + Delta-G solvation = -3713.564467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29271 -39.31849 -38.06463 -35.04089 -32.92888 -32.37489 -31.63882 -30.70671 -30.33848 -29.03727 -28.91988 -26.74832 -26.03686 -24.59036 -22.67189 -22.27286 -21.83235 -20.32931 -19.42491 -18.23410 -17.01481 -16.88690 -16.22496 -15.92579 -15.62977 -15.21611 -14.83514 -14.61485 -14.37722 -13.96359 -13.79651 -13.70264 -13.60254 -12.93566 -12.84701 -12.72663 -12.66374 -12.56065 -12.45632 -12.23206 -12.09669 -11.94723 -11.79221 -11.67333 -11.63470 -11.36921 -11.27633 -10.99305 -10.81824 -10.62337 -10.47862 -10.09751 -10.04314 -9.77238 -9.56086 -9.15666 -8.68204 -8.49672 -8.42411 -8.38925 -8.03033 -5.98756 -3.95384 1.82380 1.88038 2.71366 3.35123 3.41173 3.44303 3.62163 3.92811 4.17140 4.33437 4.50243 4.63446 4.72044 4.89205 4.93098 5.08421 5.23120 5.25880 5.28320 5.35809 5.36923 5.40045 5.42726 5.49974 5.54257 5.54697 5.64083 5.67471 5.71495 5.78858 5.87345 5.88003 5.91835 6.00827 6.02993 6.08759 6.20277 6.24506 6.36859 6.42764 6.51299 6.60161 6.82755 6.89097 6.94371 7.07345 7.29169 7.38016 7.49182 7.60653 7.82150 8.41729 8.56048 9.03241 9.07587 9.63589 11.14476 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010408 B = 0.004261 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.679762 B = 6569.323571 C = 8062.600448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.094 4.094 3 C -0.133 4.133 4 C 0.103 3.897 5 N -0.659 5.659 6 C 0.734 3.266 7 O -0.577 6.577 8 N -0.739 5.739 9 C 0.210 3.790 10 H 0.090 0.910 11 C -0.014 4.014 12 C -0.509 4.509 13 H 0.077 0.923 14 C 0.071 3.929 15 N -0.902 5.902 16 Si 0.875 3.125 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.268 1.268 20 C -0.050 4.050 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.118 4.118 25 C -0.089 4.089 26 C 0.183 3.817 27 C -0.149 4.149 28 C -0.145 4.145 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.387 0.613 38 H 0.022 0.978 39 H 0.018 0.982 40 H 0.262 0.738 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.124 0.876 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.061 0.939 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.907 20.567 3.875 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.095 4.095 3 C -0.191 4.191 4 C -0.021 4.021 5 N -0.400 5.400 6 C 0.437 3.563 7 O -0.453 6.453 8 N -0.393 5.393 9 C 0.106 3.894 10 H 0.108 0.892 11 C -0.052 4.052 12 C -0.547 4.547 13 H 0.095 0.905 14 C -0.130 4.130 15 N -0.541 5.541 16 Si 0.703 3.297 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.192 1.192 20 C -0.050 4.050 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.151 4.151 24 C -0.136 4.136 25 C -0.108 4.108 26 C 0.097 3.903 27 C -0.207 4.207 28 C -0.203 4.203 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.220 0.780 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.142 0.858 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.080 0.920 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.690 19.659 3.073 22.132 hybrid contribution -0.931 0.504 0.622 1.227 sum 8.760 20.164 3.694 22.293 Atomic orbital electron populations 1.21502 0.92056 1.02629 1.01930 1.22313 0.96521 0.94071 0.96591 1.21681 1.00696 0.94503 1.02226 1.23035 1.00199 0.85482 0.93367 1.48909 1.78452 1.02387 1.10202 1.15260 0.77578 0.78815 0.84606 1.90939 1.57923 1.65743 1.30738 1.45454 1.78065 1.09198 1.06536 1.19896 0.99060 0.76175 0.94240 0.89190 1.19942 0.90052 0.98424 0.96821 1.20946 0.93970 0.89862 1.49929 0.90530 1.24907 0.98664 0.94759 0.94653 1.69892 1.21840 1.11288 1.51063 0.86858 0.82787 0.81477 0.78619 1.20336 1.21467 1.19244 1.19835 0.95522 0.95151 0.94518 1.20789 1.00742 1.00110 0.92386 1.20943 0.99429 0.96452 0.97310 1.20988 1.00585 0.95796 0.97710 1.21060 1.00451 0.99467 0.92647 1.20993 0.96470 0.94908 0.98399 1.21817 0.95107 0.83073 0.90277 1.22003 0.94798 1.01893 1.02001 1.21886 1.00235 1.01404 0.96799 0.92209 0.91907 0.91865 0.91964 0.92008 0.92108 0.90894 0.90332 0.77990 0.96010 0.96364 0.92830 0.87050 0.86799 0.86832 0.86467 0.85836 0.91791 0.91006 0.92083 0.91626 0.91978 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 7.93 37.16 0.29 -0.88 16 2 C -0.09 -0.84 1.40 -153.86 -0.22 -1.06 16 3 C -0.13 -0.83 8.29 37.16 0.31 -0.53 16 4 C 0.10 1.02 7.07 -8.51 -0.06 0.96 16 5 N -0.66 -9.30 3.14 -175.41 -0.55 -9.85 16 6 C 0.73 13.75 8.56 -86.91 -0.74 13.01 16 7 O -0.58 -13.35 16.24 5.29 0.09 -13.27 16 8 N -0.74 -13.11 5.05 -59.81 -0.30 -13.42 16 9 C 0.21 4.41 2.19 -69.08 -0.15 4.25 16 10 H 0.09 2.09 7.49 -51.93 -0.39 1.70 16 11 C -0.01 -0.35 3.77 -27.88 -0.11 -0.45 16 12 C -0.51 -14.64 9.08 -34.44 -0.31 -14.95 16 13 H 0.08 2.32 7.03 -52.48 -0.37 1.95 16 14 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 16 Si 0.87 22.63 27.58 -169.99 -4.69 17.94 16 17 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.27 -6.67 6.39 56.52 0.36 -6.31 16 20 C -0.05 -0.95 4.50 -104.62 -0.47 -1.42 16 21 C -0.12 -2.02 9.02 -39.58 -0.36 -2.38 16 22 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 23 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 24 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 25 C -0.09 -1.67 8.83 -39.58 -0.35 -2.02 16 26 C 0.18 2.10 1.45 -136.16 -0.20 1.90 16 27 C -0.15 -1.42 7.97 37.16 0.30 -1.13 16 28 C -0.15 -1.84 7.79 37.16 0.29 -1.55 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.55 7.77 -51.93 -0.40 0.15 16 31 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 32 H 0.06 0.35 6.82 -51.93 -0.35 0.00 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.69 8.12 -51.93 -0.42 0.26 16 36 H 0.08 0.65 7.16 -51.93 -0.37 0.28 16 37 H 0.39 5.72 6.59 -40.82 -0.27 5.45 16 38 H 0.02 0.58 7.77 -51.92 -0.40 0.18 16 39 H 0.02 0.45 6.83 -51.93 -0.35 0.10 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.11 1.65 6.95 -52.49 -0.36 1.28 16 42 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 44 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.12 2.34 7.84 -52.49 -0.41 1.93 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.52 7.49 -51.93 -0.39 0.13 16 48 H 0.06 0.54 6.81 -51.93 -0.35 0.19 16 49 H 0.06 0.95 7.16 -51.93 -0.37 0.58 16 50 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -34.89 400.86 -10.31 -45.20 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -8.61 Total: 5.91 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -3.07 Total: -11.12 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.08 Total: -50.71 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.69 Total: 17.94 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.89 -10.31 -45.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160538580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.283 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds