Wall clock time and date at job start Tue Mar 31 2020 16:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 113.28574 * 2 1 4 4 C 1.53501 * 114.20168 * 133.06852 * 2 1 3 5 5 N 1.47063 * 87.98468 * 87.52038 * 4 2 1 6 6 C 1.34784 * 136.05412 * 207.08216 * 5 4 2 7 7 O 1.21586 * 120.00185 * 179.97438 * 6 5 4 8 8 N 1.34782 * 119.99763 * 0.02562 * 6 5 4 9 9 C 1.46502 * 119.99717 * 175.03959 * 8 6 5 10 10 H 1.09004 * 109.47089 * 38.65746 * 9 8 6 11 11 C 1.52996 * 109.47252 * 278.65371 * 9 8 6 12 12 C 1.50700 * 109.47305 * 174.21188 * 11 9 8 13 13 H 1.08003 * 119.99399 * 354.92503 * 12 11 9 14 14 C 1.37879 * 120.00132 * 174.65245 * 12 11 9 15 15 N 1.31509 * 120.00049 * 180.27430 * 14 12 11 16 16 Si 1.86800 * 119.99945 * 0.27344 * 14 12 11 17 17 H 1.48502 * 109.47181 * 90.00003 * 16 14 12 18 18 H 1.48495 * 109.47156 * 210.00416 * 16 14 12 19 19 H 1.48503 * 109.46885 * 330.00070 * 16 14 12 20 20 C 1.50698 * 109.46811 * 158.65057 * 9 8 6 21 21 C 1.38239 * 119.99749 * 39.73406 * 20 9 8 22 22 C 1.38240 * 119.99451 * 179.78422 * 21 20 9 23 23 C 1.38236 * 120.00165 * 0.43872 * 22 21 20 24 24 C 1.38235 * 120.00050 * 359.81070 * 23 22 21 25 25 C 1.38234 * 120.00006 * 359.97438 * 24 23 22 26 26 C 1.47057 * 87.88750 * 27.33967 * 5 4 2 27 27 C 1.53001 * 113.46746 * 87.44200 * 26 5 4 28 28 C 1.53005 * 113.46899 * 217.87999 * 26 5 4 29 29 H 1.08999 * 109.47323 * 306.44140 * 1 2 3 30 30 H 1.09003 * 109.46996 * 66.43740 * 1 2 3 31 31 H 1.08994 * 109.47428 * 186.43801 * 1 2 3 32 32 H 1.09003 * 109.46774 * 173.56007 * 3 2 1 33 33 H 1.09004 * 109.46982 * 293.56096 * 3 2 1 34 34 H 1.09005 * 109.46728 * 53.56156 * 3 2 1 35 35 H 1.08998 * 113.46887 * 332.73394 * 4 2 1 36 36 H 1.09002 * 113.46095 * 202.29585 * 4 2 1 37 37 H 0.96995 * 120.00341 * 355.03425 * 8 6 5 38 38 H 1.09010 * 109.46998 * 54.20986 * 11 9 8 39 39 H 1.08999 * 109.47320 * 294.21324 * 11 9 8 40 40 H 0.96992 * 120.00107 * 179.97438 * 15 14 12 41 41 H 1.07989 * 120.00185 * 359.97438 * 21 20 9 42 42 H 1.07997 * 119.99864 * 180.26681 * 22 21 20 43 43 H 1.08003 * 120.00056 * 179.83526 * 23 22 21 44 44 H 1.08000 * 120.00126 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.00065 * 180.02562 * 25 24 23 46 46 H 1.08996 * 109.47295 * 79.50627 * 27 26 5 47 47 H 1.09003 * 109.47326 * 199.50136 * 27 26 5 48 48 H 1.08999 * 109.46820 * 319.50257 * 27 26 5 49 49 H 1.08996 * 109.46963 * 40.48975 * 28 26 5 50 50 H 1.08996 * 109.47004 * 160.49858 * 28 26 5 51 51 H 1.09004 * 109.46568 * 280.49407 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1348 1.4054 0.0000 4 6 2.1593 -0.9561 1.0228 5 7 2.0801 -2.0144 0.0047 6 6 1.9798 -3.3585 0.0079 7 8 1.9337 -3.9671 -1.0437 8 7 1.9296 -4.0277 1.1767 9 6 1.7116 -5.4764 1.1825 10 1 2.2572 -5.9293 0.3546 11 6 0.2175 -5.7679 1.0287 12 6 0.0070 -7.2538 0.8919 13 1 0.8578 -7.9162 0.8301 14 6 -1.2716 -7.7681 0.8513 15 7 -1.4553 -9.0653 0.7373 16 14 -2.7431 -6.6223 0.9582 17 1 -3.1383 -6.1954 -0.4081 18 1 -3.8772 -7.3319 1.6026 19 1 -2.3833 -5.4287 1.7651 20 6 2.2047 -6.0534 2.4844 21 6 1.9905 -5.3715 3.6677 22 6 2.4389 -5.9030 4.8624 23 6 3.1094 -7.1118 4.8728 24 6 3.3281 -7.7911 3.6889 25 6 2.8758 -7.2618 2.4947 26 6 2.1650 -0.9613 -1.0182 27 6 3.6013 -0.5902 -1.3928 28 6 1.2837 -1.2266 -2.2405 29 1 -0.3634 0.6104 0.8267 30 1 -0.3633 0.4108 -0.9420 31 1 -0.3634 -1.0211 0.1152 32 1 3.2165 1.3354 0.1153 33 1 1.9011 1.9015 -0.9420 34 1 1.7177 1.9804 0.8268 35 1 1.5266 -1.1406 1.8910 36 1 3.1810 -0.6903 1.2940 37 1 2.0380 -3.5503 2.0140 38 1 -0.1614 -5.2638 0.1396 39 1 -0.3158 -5.4047 1.9073 40 1 -2.3547 -9.4272 0.7092 41 1 1.4702 -4.4253 3.6591 42 1 2.2678 -5.3725 5.7874 43 1 3.4621 -7.5257 5.8060 44 1 3.8516 -8.7357 3.6970 45 1 3.0463 -7.7927 1.5698 46 1 3.9996 -1.3321 -2.0848 47 1 3.6111 0.3912 -1.8673 48 1 4.2164 -0.5650 -0.4933 49 1 0.3259 -1.6335 -1.9164 50 1 1.1186 -0.2933 -2.7788 51 1 1.7790 -1.9420 -2.8970 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160538580.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:48 Heat of formation + Delta-G solvation = 5.619223 kcal Electronic energy + Delta-G solvation = -29521.900646 eV Core-core repulsion = 25807.405637 eV Total energy + Delta-G solvation = -3714.495009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29295 -40.70278 -39.42892 -36.67265 -34.88079 -33.71671 -32.64696 -31.99331 -31.61991 -30.83192 -29.72672 -27.78291 -26.92471 -26.16794 -23.76112 -23.70816 -23.36778 -21.63178 -21.01042 -19.38899 -19.05352 -17.94063 -17.60772 -17.10236 -16.76051 -16.38131 -16.22798 -16.02076 -15.84140 -15.42250 -15.19642 -14.95016 -14.65634 -14.55244 -14.51686 -14.17873 -13.94033 -13.38280 -13.31545 -13.26935 -13.26136 -13.10826 -12.80063 -12.78131 -12.65749 -12.64092 -12.48207 -12.43259 -12.23990 -11.93201 -11.90523 -11.79566 -11.62872 -11.45868 -11.01363 -10.83434 -10.80137 -10.19295 -9.73282 -9.59170 -9.41662 -8.30807 -6.32438 0.50914 0.58304 1.26382 1.28520 1.38589 1.50291 2.18899 2.30730 2.89289 3.01080 3.04595 3.20079 3.77871 3.80417 3.93110 3.99461 4.01286 4.21126 4.21851 4.30051 4.32128 4.39593 4.42500 4.57775 4.65262 4.68764 4.69694 4.77461 4.79016 4.83368 4.86174 4.88112 4.98930 5.05217 5.08305 5.10963 5.15146 5.16831 5.18686 5.25478 5.29157 5.30920 5.41402 5.43433 5.59343 5.60818 5.62632 5.67132 5.86799 6.19070 6.25331 6.34407 6.71300 7.10922 7.29431 7.65195 8.85546 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010408 B = 0.004261 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.679762 B = 6569.323571 C = 8062.600448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 C -0.128 4.128 4 C 0.099 3.901 5 N -0.664 5.664 6 C 0.725 3.275 7 O -0.636 6.636 8 N -0.726 5.726 9 C 0.225 3.775 10 H 0.051 0.949 11 C 0.000 4.000 12 C -0.512 4.512 13 H 0.044 0.956 14 C 0.014 3.986 15 N -0.944 5.944 16 Si 0.937 3.063 17 H -0.279 1.279 18 H -0.275 1.275 19 H -0.250 1.250 20 C -0.074 4.074 21 C -0.126 4.126 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.120 4.120 26 C 0.167 3.833 27 C -0.143 4.143 28 C -0.142 4.142 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.404 0.596 38 H -0.004 1.004 39 H 0.025 0.975 40 H 0.266 0.734 41 H 0.131 0.869 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.136 0.864 45 H 0.098 0.902 46 H 0.038 0.962 47 H 0.103 0.897 48 H 0.073 0.927 49 H 0.038 0.962 50 H 0.094 0.906 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.201 24.741 7.192 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.076 4.076 3 C -0.185 4.185 4 C -0.022 4.022 5 N -0.403 5.403 6 C 0.428 3.572 7 O -0.517 6.517 8 N -0.382 5.382 9 C 0.120 3.880 10 H 0.069 0.931 11 C -0.039 4.039 12 C -0.551 4.551 13 H 0.062 0.938 14 C -0.183 4.183 15 N -0.585 5.585 16 Si 0.762 3.238 17 H -0.205 1.205 18 H -0.201 1.201 19 H -0.174 1.174 20 C -0.075 4.075 21 C -0.144 4.144 22 C -0.134 4.134 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.139 4.139 26 C 0.083 3.917 27 C -0.201 4.201 28 C -0.200 4.200 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.240 0.760 38 H 0.014 0.986 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.149 0.851 42 H 0.173 0.827 43 H 0.170 0.830 44 H 0.154 0.846 45 H 0.116 0.884 46 H 0.057 0.943 47 H 0.121 0.879 48 H 0.092 0.908 49 H 0.057 0.943 50 H 0.113 0.887 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.008 23.917 6.430 26.712 hybrid contribution -0.942 -0.810 -0.433 1.316 sum 9.066 23.106 5.997 25.536 Atomic orbital electron populations 1.21517 0.92611 1.00827 1.03219 1.22239 0.95979 0.95257 0.94094 1.21687 1.01307 0.92027 1.03509 1.23422 1.02147 0.83569 0.93104 1.49045 1.76661 1.01257 1.13329 1.15533 0.77443 0.80391 0.83820 1.90889 1.60431 1.67697 1.32675 1.45111 1.77903 1.07876 1.07277 1.19304 0.95890 0.78120 0.94659 0.93126 1.19735 0.93081 0.95463 0.95599 1.21184 0.93160 0.91609 1.49126 0.93787 1.25772 1.01798 0.96317 0.94449 1.70028 1.22753 1.13213 1.52540 0.85855 0.79195 0.79968 0.78796 1.20503 1.20063 1.17368 1.19716 0.97486 0.95930 0.94387 1.21041 1.00736 1.00686 0.91979 1.21421 0.97646 0.96309 0.97975 1.21467 0.99156 0.95439 0.98307 1.21337 1.00271 1.00385 0.92322 1.21018 0.98502 0.95531 0.98843 1.22296 0.96536 0.82903 0.89978 1.21988 0.93140 1.02698 1.02235 1.21854 0.98806 1.01949 0.97394 0.90045 0.91281 0.95429 0.90724 0.91029 0.90507 0.89987 0.87630 0.75960 0.98555 0.95641 0.92543 0.85133 0.82720 0.83042 0.84648 0.88414 0.94287 0.87861 0.90819 0.94331 0.88732 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 7.93 71.98 0.57 -1.54 16 2 C -0.07 -1.12 1.40 -51.76 -0.07 -1.19 16 3 C -0.13 -0.97 8.29 71.98 0.60 -0.38 16 4 C 0.10 1.70 7.07 83.18 0.59 2.28 16 5 N -0.66 -18.67 3.14 -827.14 -2.60 -21.27 16 6 C 0.72 28.56 8.56 179.05 1.53 30.10 16 7 O -0.64 -32.02 16.24 -3.99 -0.06 -32.08 16 8 N -0.73 -26.67 5.05 -461.40 -2.33 -29.00 16 9 C 0.23 10.10 2.19 44.24 0.10 10.20 16 10 H 0.05 2.63 7.49 -2.39 -0.02 2.61 16 11 C 0.00 -0.01 3.77 29.85 0.11 0.10 16 12 C -0.51 -31.22 9.08 25.60 0.23 -30.99 16 13 H 0.04 2.90 7.03 -2.91 -0.02 2.88 16 14 C 0.01 0.85 5.47 84.66 0.46 1.31 16 15 N -0.94 -61.35 13.96 21.45 0.30 -61.06 16 16 Si 0.94 47.52 27.58 68.60 1.89 49.42 16 17 H -0.28 -14.15 7.11 99.48 0.71 -13.45 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.25 -11.84 6.39 99.48 0.64 -11.20 16 20 C -0.07 -2.93 4.50 -19.86 -0.09 -3.02 16 21 C -0.13 -3.97 9.02 22.27 0.20 -3.76 16 22 C -0.12 -3.01 10.05 22.27 0.22 -2.79 16 23 C -0.13 -3.33 10.05 22.27 0.22 -3.11 16 24 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 25 C -0.12 -4.78 8.83 22.27 0.20 -4.58 16 26 C 0.17 3.68 1.45 0.49 0.00 3.68 16 27 C -0.14 -2.46 7.97 71.98 0.57 -1.89 16 28 C -0.14 -3.70 7.79 71.98 0.56 -3.14 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.07 7.77 -2.39 -0.02 1.05 16 31 H 0.03 0.66 7.67 -2.39 -0.02 0.64 16 32 H 0.07 0.44 6.82 -2.39 -0.02 0.42 16 33 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 34 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 36 H 0.11 1.30 7.16 -2.39 -0.02 1.28 16 37 H 0.40 11.67 6.59 -92.71 -0.61 11.06 16 38 H 0.00 -0.22 7.77 -2.38 -0.02 -0.24 16 39 H 0.03 1.28 6.83 -2.39 -0.02 1.26 16 40 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 41 H 0.13 3.49 6.95 -2.92 -0.02 3.47 16 42 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 43 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 44 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 45 H 0.10 4.21 7.84 -2.91 -0.02 4.19 16 46 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.10 1.13 7.49 -2.39 -0.02 1.11 16 48 H 0.07 1.09 6.81 -2.39 -0.02 1.07 16 49 H 0.04 1.19 7.16 -2.39 -0.02 1.17 16 50 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -83.99 400.86 3.66 -80.33 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.22 Total: 26.16 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 6.23 Total: -12.50 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -4.63 Total: -111.33 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.06 Total: -32.08 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.89 Total: 49.42 kcal Total: -83.99 3.66 -80.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160538580.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.953 kcal (2) G-P(sol) polarization free energy of solvation -83.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds