Wall clock time and date at job start Tue Mar 31 2020 15:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.25377 * 2 1 4 4 C 1.52733 * 109.25313 * 240.52959 * 2 1 3 5 5 C 1.53239 * 108.43601 * 290.83971 * 4 2 1 6 6 C 1.52732 * 108.36933 * 290.11849 * 5 4 2 7 7 H 1.08993 * 109.22066 * 290.83971 * 6 5 4 8 8 N 1.46503 * 109.25342 * 171.39149 * 6 5 4 9 9 C 1.34773 * 119.99919 * 153.89821 * 8 6 5 10 10 O 1.21590 * 119.99894 * 0.02562 * 9 8 6 11 11 N 1.34773 * 120.00268 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00453 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47482 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47300 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46985 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00273 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99605 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00652 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99834 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47415 * 89.99296 * 19 17 15 21 21 H 1.48495 * 109.47326 * 209.99629 * 19 17 15 22 22 H 1.48506 * 109.47143 * 329.99590 * 19 17 15 23 23 C 1.50632 * 110.58942 * 51.10480 * 6 5 4 24 24 C 1.38912 * 117.75152 * 162.54863 * 23 6 5 25 25 C 1.37934 * 120.54137 * 179.38801 * 24 23 6 26 26 C 1.38266 * 119.77279 * 0.05277 * 25 24 23 27 27 C 1.37932 * 119.77328 * 0.11666 * 26 25 24 28 28 C 1.37670 * 122.56142 * 342.21077 * 23 6 5 29 29 H 1.09002 * 109.47153 * 59.99953 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00144 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46942 * 59.99765 * 3 2 1 33 33 H 1.08990 * 109.47395 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46443 * 300.00017 * 3 2 1 35 35 H 1.09003 * 109.67980 * 50.53614 * 4 2 1 36 36 H 1.09000 * 109.68440 * 171.08586 * 4 2 1 37 37 H 1.09002 * 109.69641 * 170.39705 * 5 4 2 38 38 H 1.09009 * 109.71755 * 49.85422 * 5 4 2 39 39 H 0.96994 * 119.99937 * 333.90096 * 8 6 5 40 40 H 0.97004 * 119.99800 * 0.02562 * 11 9 8 41 41 H 1.08995 * 109.47517 * 300.00809 * 12 11 9 42 42 H 1.09010 * 109.46865 * 60.00591 * 12 11 9 43 43 H 1.09005 * 109.46991 * 300.00208 * 13 12 11 44 44 H 1.08997 * 109.47107 * 60.00004 * 13 12 11 45 45 H 1.09003 * 109.47375 * 299.99907 * 14 13 12 46 46 H 1.08993 * 109.47434 * 60.00211 * 14 13 12 47 47 H 0.96988 * 120.00189 * 180.02562 * 18 17 15 48 48 H 1.07992 * 119.72618 * 359.41791 * 24 23 6 49 49 H 1.08000 * 120.11042 * 180.02562 * 25 24 23 50 50 H 1.07997 * 120.11316 * 180.09726 * 26 25 24 51 51 H 1.08002 * 119.72883 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0336 -0.7094 -1.2553 5 6 1.7051 -2.2012 -1.1337 6 6 2.5939 -2.8027 -0.0470 7 1 3.6265 -2.8177 -0.3955 8 7 2.1577 -4.1736 0.2300 9 6 3.0337 -5.0739 0.7182 10 8 4.1861 -4.7482 0.9292 11 7 2.6324 -6.3348 0.9735 12 6 3.5848 -7.3136 1.5036 13 6 2.8789 -8.6565 1.7018 14 6 3.8735 -9.6786 2.2560 15 6 3.1783 -11.0015 2.4506 16 1 2.1318 -11.1030 2.2040 17 6 3.8782 -12.0819 2.9443 18 7 5.1526 -11.9582 3.2451 19 14 3.0165 -13.7215 3.1862 20 1 3.1321 -14.5293 1.9455 21 1 3.6497 -14.4521 4.3133 22 1 1.5823 -13.4866 3.4920 23 6 2.5084 -1.9891 1.2178 24 6 2.9441 -2.5794 2.3974 25 6 2.9033 -1.8821 3.5868 26 6 2.4240 -0.5854 3.6064 27 6 1.9877 0.0013 2.4368 28 6 2.0267 -0.6996 1.2381 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6692 1.9569 0.8900 33 1 3.1244 1.4486 -0.0005 34 1 1.6691 1.9568 -0.8900 35 1 1.5388 -0.2959 -2.1342 36 1 3.1119 -0.5770 -1.3443 37 1 1.8994 -2.6988 -2.0839 38 1 0.6570 -2.3260 -0.8615 39 1 1.2383 -4.4332 0.0620 40 1 1.7129 -6.5945 0.8056 41 1 4.4085 -7.4368 0.8006 42 1 3.9726 -6.9621 2.4598 43 1 2.0550 -8.5337 2.4048 44 1 2.4913 -9.0078 0.7455 45 1 4.6977 -9.8015 1.5534 46 1 4.2607 -9.3271 3.2123 47 1 5.6450 -12.7184 3.5921 48 1 3.3182 -3.5923 2.3829 49 1 3.2442 -2.3477 4.4997 50 1 2.3911 -0.0338 4.5344 51 1 1.6130 1.0142 2.4531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170885247.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:18 Heat of formation + Delta-G solvation = -32.518515 kcal Electronic energy + Delta-G solvation = -28147.054917 eV Core-core repulsion = 24430.906132 eV Total energy + Delta-G solvation = -3716.148786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10552 -39.54801 -37.04786 -35.99099 -34.98606 -33.35727 -32.15203 -30.85183 -30.41107 -30.00403 -27.63944 -26.95878 -25.65243 -23.24977 -23.04734 -22.92590 -21.06649 -20.80001 -20.36035 -19.00907 -17.99751 -17.08443 -16.52081 -16.13141 -15.75593 -15.40345 -15.36620 -14.65882 -14.49421 -14.38777 -14.21779 -14.11343 -14.02659 -13.67695 -13.21401 -12.95980 -12.87832 -12.35691 -12.32795 -12.26376 -12.07329 -12.01191 -11.80451 -11.70201 -11.58183 -11.48522 -10.98351 -10.90288 -10.71887 -10.61005 -10.56747 -10.53532 -10.10405 -9.85245 -9.44177 -9.21932 -9.12095 -8.78866 -8.71245 -8.62022 -8.36739 -6.01339 -4.04424 1.24683 1.35288 2.81934 3.30908 3.32629 3.37317 3.40068 3.71030 4.21797 4.27716 4.37777 4.45253 4.50642 4.59559 4.71337 4.92625 4.94864 5.08026 5.10721 5.14626 5.26929 5.29895 5.34336 5.39820 5.48041 5.50502 5.53226 5.58344 5.66241 5.69808 5.75978 5.80986 5.82025 5.89939 5.97238 6.02367 6.06568 6.18922 6.38656 6.43518 6.49841 6.56243 6.62754 6.66131 6.80917 6.96443 7.02832 7.08492 7.64343 7.77193 7.97576 8.14290 8.38441 8.73456 9.02283 9.59651 11.09920 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.002042 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.158279 B =13710.195585 C =14225.886378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.127 4.127 6 C 0.206 3.794 7 H 0.098 0.902 8 N -0.745 5.745 9 C 0.700 3.300 10 O -0.589 6.589 11 N -0.741 5.741 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.092 4.092 24 C -0.100 4.100 25 C -0.127 4.127 26 C -0.119 4.119 27 C -0.128 4.128 28 C -0.060 4.060 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.395 0.605 40 H 0.394 0.606 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 48 H 0.136 0.864 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.788 28.599 -7.898 31.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.144 4.144 5 C -0.165 4.165 6 C 0.101 3.899 7 H 0.116 0.884 8 N -0.400 5.400 9 C 0.400 3.600 10 O -0.468 6.468 11 N -0.395 5.395 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.094 4.094 24 C -0.118 4.118 25 C -0.145 4.145 26 C -0.137 4.137 27 C -0.146 4.146 28 C -0.061 4.061 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.229 0.771 40 H 0.227 0.773 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.038 0.962 47 H 0.071 0.929 48 H 0.154 0.846 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.536 28.759 -7.625 31.243 hybrid contribution -1.200 -1.265 0.253 1.762 sum -10.736 27.494 -7.372 30.423 Atomic orbital electron populations 1.21939 0.93634 1.02143 1.01820 1.19439 0.95718 0.94991 0.92389 1.21963 1.01418 0.94594 1.01868 1.21585 1.01800 0.94008 0.96975 1.21866 1.00126 0.96132 0.98397 1.19517 1.00038 0.79050 0.91318 0.88406 1.45245 1.13221 1.10320 1.71204 1.16031 0.84889 0.80814 0.78264 1.90927 1.17464 1.79169 1.59205 1.45417 1.14685 1.09591 1.69810 1.21514 0.91334 0.87518 0.98458 1.21888 1.00089 0.93074 1.00778 1.19027 0.93835 0.92190 0.96325 1.21201 0.96467 0.95252 1.43099 0.92668 1.25036 0.94890 0.99043 0.95552 1.69964 1.07926 1.31051 1.44304 0.86582 0.79675 0.83888 0.77761 1.20669 1.21215 1.19916 1.19982 0.99884 0.93945 0.95573 1.21667 0.96998 1.01344 0.91829 1.21150 1.00287 0.94880 0.98231 1.21079 0.99262 0.95430 0.97952 1.21094 1.01496 0.99749 0.92233 1.19429 0.98840 0.93341 0.94491 0.92297 0.92527 0.92284 0.92257 0.92336 0.92335 0.90817 0.91114 0.90598 0.90724 0.77128 0.77299 0.91926 0.91970 0.92789 0.92777 0.96253 0.96247 0.92928 0.84644 0.86279 0.86420 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.17 37.16 0.30 -0.55 16 2 C -0.03 -0.18 0.63 -155.83 -0.10 -0.28 16 3 C -0.14 -0.87 7.96 37.16 0.30 -0.57 16 4 C -0.11 -0.70 4.68 -26.74 -0.13 -0.83 16 5 C -0.13 -0.92 5.39 -26.75 -0.14 -1.07 16 6 C 0.21 2.17 2.59 -69.25 -0.18 1.99 16 7 H 0.10 1.24 7.55 -51.93 -0.39 0.85 16 8 N -0.74 -8.11 4.83 -59.98 -0.29 -8.40 16 9 C 0.70 10.39 7.07 -86.92 -0.61 9.78 16 10 O -0.59 -11.09 14.20 5.29 0.08 -11.01 16 11 N -0.74 -10.58 5.56 -65.23 -0.36 -10.94 16 12 C 0.13 2.39 5.67 -4.04 -0.02 2.36 16 13 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 23 C -0.09 -1.07 5.55 -104.61 -0.58 -1.65 16 24 C -0.10 -1.36 9.02 -39.44 -0.36 -1.72 16 25 C -0.13 -1.55 10.05 -39.68 -0.40 -1.95 16 26 C -0.12 -1.23 10.05 -39.68 -0.40 -1.63 16 27 C -0.13 -1.22 8.90 -39.44 -0.35 -1.57 16 28 C -0.06 -0.59 4.71 -104.61 -0.49 -1.08 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 6.45 -51.93 -0.34 0.05 16 32 H 0.06 0.34 6.38 -51.93 -0.33 0.01 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 36 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.49 6.27 -51.92 -0.33 0.16 16 39 H 0.40 3.21 8.62 -40.82 -0.35 2.86 16 40 H 0.39 4.49 8.49 -40.82 -0.35 4.15 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 48 H 0.14 2.17 4.49 -52.49 -0.24 1.93 16 49 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 50 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 51 H 0.12 0.89 6.32 -52.49 -0.33 0.56 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -32.85 396.39 -11.26 -44.11 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.52 Total: 4.06 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -3.85 Total: -14.16 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.08 Total: -45.48 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.85 -11.26 -44.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885247.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.594 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds