Wall clock time and date at job start Tue Mar 31 2020 15:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.25377 * 2 1 4 4 C 1.52733 * 109.25313 * 240.52959 * 2 1 3 5 5 C 1.53239 * 108.43601 * 290.83971 * 4 2 1 6 6 C 1.52732 * 108.36933 * 290.11849 * 5 4 2 7 7 H 1.08993 * 109.22066 * 290.83971 * 6 5 4 8 8 N 1.46503 * 109.25342 * 171.39149 * 6 5 4 9 9 C 1.34773 * 119.99919 * 153.89821 * 8 6 5 10 10 O 1.21590 * 119.99894 * 0.02562 * 9 8 6 11 11 N 1.34773 * 120.00268 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00453 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47482 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.47300 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.46985 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00273 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99605 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00652 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99834 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47415 * 89.99296 * 19 17 15 21 21 H 1.48495 * 109.47326 * 209.99629 * 19 17 15 22 22 H 1.48506 * 109.47143 * 329.99590 * 19 17 15 23 23 C 1.50632 * 110.58942 * 51.10480 * 6 5 4 24 24 C 1.38912 * 117.75152 * 162.54863 * 23 6 5 25 25 C 1.37934 * 120.54137 * 179.38801 * 24 23 6 26 26 C 1.38266 * 119.77279 * 0.05277 * 25 24 23 27 27 C 1.37932 * 119.77328 * 0.11666 * 26 25 24 28 28 C 1.37670 * 122.56142 * 342.21077 * 23 6 5 29 29 H 1.09002 * 109.47153 * 59.99953 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00144 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46942 * 59.99765 * 3 2 1 33 33 H 1.08990 * 109.47395 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46443 * 300.00017 * 3 2 1 35 35 H 1.09003 * 109.67980 * 50.53614 * 4 2 1 36 36 H 1.09000 * 109.68440 * 171.08586 * 4 2 1 37 37 H 1.09002 * 109.69641 * 170.39705 * 5 4 2 38 38 H 1.09009 * 109.71755 * 49.85422 * 5 4 2 39 39 H 0.96994 * 119.99937 * 333.90096 * 8 6 5 40 40 H 0.97004 * 119.99800 * 0.02562 * 11 9 8 41 41 H 1.08995 * 109.47517 * 300.00809 * 12 11 9 42 42 H 1.09010 * 109.46865 * 60.00591 * 12 11 9 43 43 H 1.09005 * 109.46991 * 300.00208 * 13 12 11 44 44 H 1.08997 * 109.47107 * 60.00004 * 13 12 11 45 45 H 1.09003 * 109.47375 * 299.99907 * 14 13 12 46 46 H 1.08993 * 109.47434 * 60.00211 * 14 13 12 47 47 H 0.96988 * 120.00189 * 180.02562 * 18 17 15 48 48 H 1.07992 * 119.72618 * 359.41791 * 24 23 6 49 49 H 1.08000 * 120.11042 * 180.02562 * 25 24 23 50 50 H 1.07997 * 120.11316 * 180.09726 * 26 25 24 51 51 H 1.08002 * 119.72883 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0336 -0.7094 -1.2553 5 6 1.7051 -2.2012 -1.1337 6 6 2.5939 -2.8027 -0.0470 7 1 3.6265 -2.8177 -0.3955 8 7 2.1577 -4.1736 0.2300 9 6 3.0337 -5.0739 0.7182 10 8 4.1861 -4.7482 0.9292 11 7 2.6324 -6.3348 0.9735 12 6 3.5848 -7.3136 1.5036 13 6 2.8789 -8.6565 1.7018 14 6 3.8735 -9.6786 2.2560 15 6 3.1783 -11.0015 2.4506 16 1 2.1318 -11.1030 2.2040 17 6 3.8782 -12.0819 2.9443 18 7 5.1526 -11.9582 3.2451 19 14 3.0165 -13.7215 3.1862 20 1 3.1321 -14.5293 1.9455 21 1 3.6497 -14.4521 4.3133 22 1 1.5823 -13.4866 3.4920 23 6 2.5084 -1.9891 1.2178 24 6 2.9441 -2.5794 2.3974 25 6 2.9033 -1.8821 3.5868 26 6 2.4240 -0.5854 3.6064 27 6 1.9877 0.0013 2.4368 28 6 2.0267 -0.6996 1.2381 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6692 1.9569 0.8900 33 1 3.1244 1.4486 -0.0005 34 1 1.6691 1.9568 -0.8900 35 1 1.5388 -0.2959 -2.1342 36 1 3.1119 -0.5770 -1.3443 37 1 1.8994 -2.6988 -2.0839 38 1 0.6570 -2.3260 -0.8615 39 1 1.2383 -4.4332 0.0620 40 1 1.7129 -6.5945 0.8056 41 1 4.4085 -7.4368 0.8006 42 1 3.9726 -6.9621 2.4598 43 1 2.0550 -8.5337 2.4048 44 1 2.4913 -9.0078 0.7455 45 1 4.6977 -9.8015 1.5534 46 1 4.2607 -9.3271 3.2123 47 1 5.6450 -12.7184 3.5921 48 1 3.3182 -3.5923 2.3829 49 1 3.2442 -2.3477 4.4997 50 1 2.3911 -0.0338 4.5344 51 1 1.6130 1.0142 2.4531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170885247.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:17 Heat of formation + Delta-G solvation = -52.167236 kcal Electronic energy + Delta-G solvation = -28147.906950 eV Core-core repulsion = 24430.906132 eV Total energy + Delta-G solvation = -3717.000818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.96788 -40.63106 -37.77882 -37.24307 -36.23272 -35.20308 -33.46445 -32.28207 -31.20174 -30.79032 -28.61974 -28.07982 -26.66545 -24.80991 -23.95128 -23.74862 -22.31260 -22.00080 -21.68309 -19.75250 -19.14659 -18.54017 -17.90879 -17.33540 -16.66423 -16.51391 -16.46246 -16.21942 -15.70762 -15.44517 -15.32196 -15.17698 -14.74096 -14.48448 -14.29106 -14.13008 -13.79170 -13.73052 -13.46875 -13.43328 -13.02034 -12.85846 -12.75390 -12.65052 -12.55765 -12.55179 -12.37999 -12.31527 -12.17674 -11.68089 -11.65656 -11.51280 -11.32295 -11.26308 -11.18437 -11.11138 -10.55781 -10.36050 -9.84635 -9.65551 -9.53040 -8.19705 -6.31327 0.40114 0.47864 1.41173 1.42803 1.53667 1.70946 2.11997 2.41601 2.84354 3.13847 3.30321 3.60715 3.66647 3.88266 3.91470 4.03731 4.16001 4.20779 4.22160 4.25265 4.37623 4.41252 4.50487 4.55254 4.62131 4.65993 4.80186 4.88742 4.92808 4.94986 4.98118 5.00968 5.06091 5.10847 5.15097 5.16040 5.19102 5.21046 5.29630 5.38456 5.45976 5.47108 5.53706 5.58289 5.63561 5.68469 5.70398 5.78407 5.83845 6.00588 6.12965 6.22200 6.85920 7.10020 7.38146 7.56939 8.92438 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024108 B = 0.002042 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.158279 B =13710.195585 C =14225.886378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 C -0.140 4.140 4 C -0.105 4.105 5 C -0.119 4.119 6 C 0.206 3.794 7 H 0.070 0.930 8 N -0.725 5.725 9 C 0.699 3.301 10 O -0.632 6.632 11 N -0.730 5.730 12 C 0.151 3.849 13 C -0.100 4.100 14 C 0.024 3.976 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.260 1.260 23 C -0.104 4.104 24 C -0.129 4.129 25 C -0.147 4.147 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.057 4.057 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.412 0.588 40 H 0.411 0.589 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.066 0.934 44 H 0.069 0.931 45 H -0.008 1.008 46 H -0.009 1.009 47 H 0.263 0.737 48 H 0.105 0.895 49 H 0.117 0.883 50 H 0.141 0.859 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.101 30.217 -9.253 34.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 C -0.197 4.197 4 C -0.143 4.143 5 C -0.156 4.156 6 C 0.101 3.899 7 H 0.088 0.912 8 N -0.381 5.381 9 C 0.399 3.601 10 O -0.514 6.514 11 N -0.386 5.386 12 C 0.026 3.974 13 C -0.138 4.138 14 C -0.014 4.014 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.184 1.184 23 C -0.105 4.105 24 C -0.148 4.148 25 C -0.165 4.165 26 C -0.139 4.139 27 C -0.144 4.144 28 C -0.058 4.058 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.249 0.751 40 H 0.248 0.752 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.011 0.989 46 H 0.009 0.991 47 H 0.072 0.928 48 H 0.123 0.877 49 H 0.135 0.865 50 H 0.159 0.841 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.921 30.399 -9.007 34.237 hybrid contribution -0.127 -1.675 0.695 1.817 sum -13.048 28.724 -8.312 32.626 Atomic orbital electron populations 1.21929 0.92361 1.02222 1.02788 1.19516 0.96578 0.95284 0.91072 1.21964 1.00783 0.93924 1.03076 1.21626 1.01519 0.93381 0.97771 1.21861 0.99950 0.96508 0.97309 1.19612 0.99570 0.78614 0.92140 0.91211 1.45062 1.13391 1.09927 1.69676 1.16150 0.84748 0.81126 0.78090 1.90901 1.19720 1.79901 1.60890 1.45048 1.14934 1.08989 1.69624 1.21053 0.91396 0.87543 0.97372 1.21581 0.98709 0.92108 1.01364 1.18941 0.94386 0.93529 0.94562 1.21674 0.97151 0.96200 1.42767 0.91488 1.26051 0.95588 1.03452 0.95189 1.70115 1.09734 1.32372 1.45327 0.85398 0.78926 0.78595 0.77813 1.19762 1.21076 1.18408 1.20095 1.00375 0.95042 0.95036 1.21571 0.99019 1.00582 0.93581 1.21262 1.01343 0.96072 0.97801 1.21356 0.98445 0.94596 0.99456 1.21463 1.00472 1.00778 0.91735 1.19788 0.97452 0.92486 0.96050 0.90443 0.92510 0.92653 0.91641 0.93400 0.90594 0.88309 0.92134 0.89560 0.89264 0.75145 0.75238 0.93502 0.93785 0.91486 0.91247 0.98948 0.99058 0.92823 0.87748 0.86486 0.84144 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.17 71.98 0.59 -0.60 16 2 C -0.02 -0.28 0.63 -53.04 -0.03 -0.31 16 3 C -0.14 -1.30 7.96 71.98 0.57 -0.73 16 4 C -0.11 -1.12 4.68 30.59 0.14 -0.98 16 5 C -0.12 -1.47 5.39 30.59 0.16 -1.30 16 6 C 0.21 4.34 2.59 44.13 0.11 4.46 16 7 H 0.07 1.88 7.55 -2.39 -0.02 1.86 16 8 N -0.73 -15.72 4.83 -461.95 -2.23 -17.95 16 9 C 0.70 21.47 7.07 179.06 1.27 22.73 16 10 O -0.63 -25.42 14.20 -4.00 -0.06 -25.48 16 11 N -0.73 -21.01 5.56 -478.55 -2.66 -23.67 16 12 C 0.15 5.55 5.67 86.38 0.49 6.04 16 13 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 14 C 0.02 1.24 4.97 29.85 0.15 1.39 16 15 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 17 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 18 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16 19 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 23 C -0.10 -2.44 5.55 -19.86 -0.11 -2.55 16 24 C -0.13 -3.73 9.02 22.36 0.20 -3.53 16 25 C -0.15 -3.73 10.05 22.20 0.22 -3.51 16 26 C -0.12 -2.38 10.05 22.20 0.22 -2.16 16 27 C -0.13 -2.18 8.90 22.36 0.20 -1.99 16 28 C -0.06 -1.03 4.71 -19.86 -0.09 -1.13 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.51 8.06 -2.39 -0.02 0.49 16 31 H 0.05 0.54 6.45 -2.38 -0.02 0.52 16 32 H 0.06 0.53 6.38 -2.39 -0.02 0.51 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.62 8.12 -2.39 -0.02 0.60 16 36 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 0.88 6.27 -2.38 -0.01 0.87 16 39 H 0.41 6.10 8.62 -92.71 -0.80 5.31 16 40 H 0.41 8.88 8.49 -92.71 -0.79 8.09 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 45 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 47 H 0.26 15.26 8.31 -92.72 -0.77 14.49 16 48 H 0.10 3.66 4.49 -2.91 -0.01 3.65 16 49 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 50 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 51 H 0.15 1.71 6.32 -2.91 -0.02 1.69 16 Total: -1.00 -74.77 396.39 1.66 -73.11 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.65 Total: 23.19 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 4.95 Total: -17.92 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -4.61 Total: -99.05 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.06 Total: -25.48 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -74.77 1.66 -73.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885247.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.943 kcal (2) G-P(sol) polarization free energy of solvation -74.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds