Wall clock time and date at job start Tue Mar 31 2020 15:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.25036 * 2 1 4 4 C 1.52739 * 109.25006 * 119.46885 * 2 1 3 5 5 C 1.53329 * 108.37282 * 69.22853 * 4 2 1 6 6 C 1.52736 * 108.37775 * 69.92099 * 5 4 2 7 7 H 1.08998 * 109.25194 * 69.16944 * 6 5 4 8 8 N 1.46496 * 109.25380 * 188.63900 * 6 5 4 9 9 C 1.34777 * 119.99614 * 205.52594 * 8 6 5 10 10 O 1.21588 * 120.00178 * 0.02562 * 9 8 6 11 11 N 1.34784 * 119.99964 * 180.02562 * 9 8 6 12 12 C 1.46493 * 119.99864 * 179.73002 * 11 9 8 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47182 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46808 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00289 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00080 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99724 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00211 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47455 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47057 * 120.00377 * 19 17 15 22 22 H 1.48508 * 109.46895 * 239.99925 * 19 17 15 23 23 C 1.50635 * 110.55150 * 308.90859 * 6 5 4 24 24 C 1.38964 * 117.70596 * 197.44936 * 23 6 5 25 25 C 1.37933 * 120.53485 * 180.27024 * 24 23 6 26 26 C 1.38265 * 119.76725 * 0.02562 * 25 24 23 27 27 C 1.37939 * 119.77375 * 359.89465 * 26 25 24 28 28 C 1.37604 * 122.61055 * 17.60281 * 23 6 5 29 29 H 1.09007 * 109.47112 * 300.53147 * 1 2 3 30 30 H 1.08997 * 109.47330 * 60.52642 * 1 2 3 31 31 H 1.08991 * 109.47534 * 180.53310 * 1 2 3 32 32 H 1.08999 * 109.46930 * 179.46348 * 3 2 1 33 33 H 1.08993 * 109.47628 * 299.47049 * 3 2 1 34 34 H 1.09002 * 109.47114 * 59.47156 * 3 2 1 35 35 H 1.08998 * 109.68439 * 309.50582 * 4 2 1 36 36 H 1.08998 * 109.67909 * 188.93944 * 4 2 1 37 37 H 1.09004 * 109.68559 * 310.19685 * 5 4 2 38 38 H 1.09004 * 109.68155 * 189.64297 * 5 4 2 39 39 H 0.96996 * 120.00499 * 25.53171 * 8 6 5 40 40 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 41 41 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 42 42 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 43 43 H 1.09007 * 109.46593 * 299.99743 * 13 12 11 44 44 H 1.08993 * 109.47372 * 59.99485 * 13 12 11 45 45 H 1.08993 * 109.47057 * 299.99535 * 14 13 12 46 46 H 1.09001 * 109.47095 * 59.99863 * 14 13 12 47 47 H 0.96993 * 120.00031 * 179.97438 * 18 17 15 48 48 H 1.08000 * 119.74402 * 0.29743 * 24 23 6 49 49 H 1.07992 * 120.11955 * 180.02562 * 25 24 23 50 50 H 1.08004 * 120.11360 * 179.87415 * 26 25 24 51 51 H 1.07997 * 119.72559 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0336 -0.7094 1.2554 5 6 1.7058 -2.2021 1.1315 6 6 2.5963 -2.8021 0.0453 7 1 3.6286 -2.8176 0.3948 8 7 2.1604 -4.1725 -0.2343 9 6 3.0344 -5.0690 -0.7332 10 8 4.1847 -4.7405 -0.9508 11 7 2.6333 -6.3297 -0.9910 12 6 3.5817 -7.3025 -1.5389 13 6 2.8769 -8.6459 -1.7373 14 6 3.8673 -9.6618 -2.3101 15 6 3.1732 -10.9851 -2.5050 16 1 2.1300 -11.0909 -2.2465 17 6 3.8697 -12.0606 -3.0141 18 7 5.1401 -11.9316 -3.3293 19 14 3.0092 -13.7007 -3.2563 20 1 1.5919 -13.5840 -2.8289 21 1 3.0634 -14.0811 -4.6908 22 1 3.6882 -14.7409 -2.4424 23 6 2.5119 -1.9863 -1.2182 24 6 2.9496 -2.5756 -2.3981 25 6 2.9038 -1.8795 -3.5881 26 6 2.4190 -0.5847 -3.6077 27 6 1.9826 0.0011 -2.4377 28 6 2.0267 -0.6988 -1.2386 29 1 -0.3634 0.5221 0.8852 30 1 -0.3634 0.5056 -0.8946 31 1 -0.3634 -1.0275 0.0096 32 1 3.1244 1.4486 0.0096 33 1 1.6770 1.9542 -0.8946 34 1 1.6614 1.9596 0.8852 35 1 1.5383 -0.2964 2.1341 36 1 3.1118 -0.5766 1.3446 37 1 0.6581 -2.3264 0.8575 38 1 1.8989 -2.7005 2.0815 39 1 1.2429 -4.4347 -0.0605 40 1 1.7155 -6.5916 -0.8178 41 1 3.9566 -6.9442 -2.4977 42 1 4.4147 -7.4274 -0.8469 43 1 2.5017 -9.0044 -0.7787 44 1 2.0443 -8.5207 -2.4294 45 1 4.2421 -9.3031 -3.2687 46 1 4.7002 -9.7871 -1.6182 47 1 5.6302 -12.6883 -3.6872 48 1 3.3283 -3.5869 -2.3837 49 1 3.2453 -2.3441 -4.5012 50 1 2.3825 -0.0338 -4.5360 51 1 1.6037 1.0123 -2.4540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170885249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:20 Heat of formation + Delta-G solvation = -32.169157 kcal Electronic energy + Delta-G solvation = -28153.808950 eV Core-core repulsion = 24437.675313 eV Total energy + Delta-G solvation = -3716.133636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.10767 -39.54960 -37.04316 -35.99129 -34.98689 -33.35961 -32.15177 -30.85113 -30.40765 -29.99827 -27.63886 -26.95960 -25.65323 -23.24831 -23.04817 -22.92545 -21.06753 -20.79996 -20.36080 -19.00618 -17.99907 -17.08544 -16.52391 -16.13392 -15.75416 -15.40147 -15.37066 -14.66003 -14.49349 -14.38566 -14.21933 -14.11359 -14.02701 -13.67752 -13.21090 -12.95195 -12.87643 -12.35783 -12.32380 -12.27082 -12.07258 -12.00945 -11.80095 -11.70492 -11.58091 -11.48341 -10.98299 -10.91964 -10.72305 -10.60143 -10.55405 -10.52924 -10.10529 -9.85679 -9.44524 -9.21537 -9.10846 -8.78323 -8.71183 -8.62112 -8.37221 -6.01665 -4.04615 1.25074 1.35608 2.81823 3.29913 3.32301 3.37430 3.40936 3.71398 4.21814 4.27840 4.37743 4.45155 4.50597 4.59830 4.71331 4.92636 4.95118 5.08433 5.10737 5.14508 5.27191 5.30024 5.34148 5.39966 5.48099 5.50486 5.53433 5.58418 5.66333 5.69754 5.76123 5.80985 5.81935 5.90179 5.97541 6.02761 6.06735 6.18834 6.38756 6.43776 6.49900 6.56586 6.62673 6.66364 6.80871 6.96858 7.02749 7.08392 7.64460 7.77060 7.97445 8.14111 8.38342 8.73213 9.02345 9.59514 11.09661 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.002045 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.908323 B =13691.440245 C =14208.136733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.127 4.127 6 C 0.206 3.794 7 H 0.098 0.902 8 N -0.745 5.745 9 C 0.700 3.300 10 O -0.589 6.589 11 N -0.741 5.741 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.093 4.093 24 C -0.101 4.101 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.128 4.128 28 C -0.060 4.060 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.395 0.605 40 H 0.394 0.606 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.260 0.740 48 H 0.137 0.863 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 28.514 8.139 31.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.144 4.144 5 C -0.165 4.165 6 C 0.101 3.899 7 H 0.116 0.884 8 N -0.400 5.400 9 C 0.400 3.600 10 O -0.467 6.467 11 N -0.395 5.395 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.094 4.094 24 C -0.119 4.119 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.146 4.146 28 C -0.061 4.061 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.227 0.773 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 48 H 0.155 0.845 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.516 28.677 7.866 31.222 hybrid contribution -1.189 -1.260 -0.269 1.753 sum -10.705 27.417 7.597 30.398 Atomic orbital electron populations 1.21940 0.93638 1.02141 1.01824 1.19442 0.95716 0.94996 0.92393 1.21963 1.01416 0.94596 1.01874 1.21601 1.01797 0.93992 0.96974 1.21882 1.00113 0.96142 0.98390 1.19514 1.00009 0.79058 0.91324 0.88438 1.45245 1.13498 1.10472 1.70767 1.16034 0.84867 0.80805 0.78285 1.90924 1.17599 1.79003 1.59220 1.45419 1.15004 1.09796 1.69278 1.21516 0.91430 0.87662 0.98219 1.21889 1.00079 0.93066 1.00793 1.19032 0.93876 0.92265 0.96237 1.21240 0.96834 0.95415 1.42457 0.92612 1.25040 0.94889 0.99049 0.95581 1.69977 1.08216 1.31159 1.43890 0.86527 0.79701 0.83915 0.77779 1.19779 1.21013 1.21007 1.19980 0.99883 0.93959 0.95579 1.21722 0.96965 1.01418 0.91807 1.21151 1.00280 0.94900 0.98237 1.21083 0.99247 0.95447 0.97945 1.21092 1.01520 0.99753 0.92226 1.19410 0.98825 0.93375 0.94482 0.92306 0.92524 0.92282 0.92340 0.92254 0.92339 0.90805 0.91114 0.90715 0.90597 0.77124 0.77296 0.91995 0.91897 0.92771 0.92792 0.96249 0.96240 0.92986 0.84530 0.86285 0.86428 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.18 37.16 0.30 -0.56 16 2 C -0.03 -0.18 0.63 -155.82 -0.10 -0.28 16 3 C -0.14 -0.87 7.98 37.16 0.30 -0.58 16 4 C -0.11 -0.70 4.69 -26.70 -0.13 -0.83 16 5 C -0.13 -0.92 5.39 -26.70 -0.14 -1.06 16 6 C 0.21 2.17 2.59 -69.25 -0.18 1.99 16 7 H 0.10 1.23 7.56 -51.93 -0.39 0.84 16 8 N -0.74 -8.11 4.84 -59.98 -0.29 -8.40 16 9 C 0.70 10.38 7.07 -86.91 -0.61 9.77 16 10 O -0.59 -11.07 14.14 5.29 0.07 -10.99 16 11 N -0.74 -10.57 5.56 -65.22 -0.36 -10.93 16 12 C 0.13 2.38 5.67 -4.04 -0.02 2.36 16 13 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.09 -1.08 5.55 -104.62 -0.58 -1.66 16 24 C -0.10 -1.38 9.01 -39.42 -0.36 -1.73 16 25 C -0.13 -1.56 10.05 -39.68 -0.40 -1.96 16 26 C -0.12 -1.23 10.05 -39.68 -0.40 -1.63 16 27 C -0.13 -1.23 8.88 -39.44 -0.35 -1.58 16 28 C -0.06 -0.59 4.70 -104.64 -0.49 -1.08 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.05 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.34 6.36 -51.93 -0.33 0.01 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 36 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.07 0.49 6.25 -51.93 -0.32 0.16 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.40 3.21 8.61 -40.82 -0.35 2.86 16 40 H 0.39 4.49 8.49 -40.82 -0.35 4.14 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.14 2.19 4.43 -52.49 -0.23 1.96 16 49 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 51 H 0.12 0.90 6.32 -52.49 -0.33 0.56 16 LS Contribution 396.22 15.07 5.97 5.97 Total: -1.00 -32.86 396.22 -11.26 -44.12 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.52 Total: 4.07 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -3.85 Total: -14.21 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.08 Total: -45.46 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -10.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.86 -11.26 -44.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.952 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds