Wall clock time and date at job start Tue Mar 31 2020 15:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.25036 * 2 1 4 4 C 1.52739 * 109.25006 * 119.46885 * 2 1 3 5 5 C 1.53329 * 108.37282 * 69.22853 * 4 2 1 6 6 C 1.52736 * 108.37775 * 69.92099 * 5 4 2 7 7 H 1.08998 * 109.25194 * 69.16944 * 6 5 4 8 8 N 1.46496 * 109.25380 * 188.63900 * 6 5 4 9 9 C 1.34777 * 119.99614 * 205.52594 * 8 6 5 10 10 O 1.21588 * 120.00178 * 0.02562 * 9 8 6 11 11 N 1.34784 * 119.99964 * 180.02562 * 9 8 6 12 12 C 1.46493 * 119.99864 * 179.73002 * 11 9 8 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47182 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46808 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00289 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00080 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99724 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00211 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47455 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47057 * 120.00377 * 19 17 15 22 22 H 1.48508 * 109.46895 * 239.99925 * 19 17 15 23 23 C 1.50635 * 110.55150 * 308.90859 * 6 5 4 24 24 C 1.38964 * 117.70596 * 197.44936 * 23 6 5 25 25 C 1.37933 * 120.53485 * 180.27024 * 24 23 6 26 26 C 1.38265 * 119.76725 * 0.02562 * 25 24 23 27 27 C 1.37939 * 119.77375 * 359.89465 * 26 25 24 28 28 C 1.37604 * 122.61055 * 17.60281 * 23 6 5 29 29 H 1.09007 * 109.47112 * 300.53147 * 1 2 3 30 30 H 1.08997 * 109.47330 * 60.52642 * 1 2 3 31 31 H 1.08991 * 109.47534 * 180.53310 * 1 2 3 32 32 H 1.08999 * 109.46930 * 179.46348 * 3 2 1 33 33 H 1.08993 * 109.47628 * 299.47049 * 3 2 1 34 34 H 1.09002 * 109.47114 * 59.47156 * 3 2 1 35 35 H 1.08998 * 109.68439 * 309.50582 * 4 2 1 36 36 H 1.08998 * 109.67909 * 188.93944 * 4 2 1 37 37 H 1.09004 * 109.68559 * 310.19685 * 5 4 2 38 38 H 1.09004 * 109.68155 * 189.64297 * 5 4 2 39 39 H 0.96996 * 120.00499 * 25.53171 * 8 6 5 40 40 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 41 41 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 42 42 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 43 43 H 1.09007 * 109.46593 * 299.99743 * 13 12 11 44 44 H 1.08993 * 109.47372 * 59.99485 * 13 12 11 45 45 H 1.08993 * 109.47057 * 299.99535 * 14 13 12 46 46 H 1.09001 * 109.47095 * 59.99863 * 14 13 12 47 47 H 0.96993 * 120.00031 * 179.97438 * 18 17 15 48 48 H 1.08000 * 119.74402 * 0.29743 * 24 23 6 49 49 H 1.07992 * 120.11955 * 180.02562 * 25 24 23 50 50 H 1.08004 * 120.11360 * 179.87415 * 26 25 24 51 51 H 1.07997 * 119.72559 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0336 -0.7094 1.2554 5 6 1.7058 -2.2021 1.1315 6 6 2.5963 -2.8021 0.0453 7 1 3.6286 -2.8176 0.3948 8 7 2.1604 -4.1725 -0.2343 9 6 3.0344 -5.0690 -0.7332 10 8 4.1847 -4.7405 -0.9508 11 7 2.6333 -6.3297 -0.9910 12 6 3.5817 -7.3025 -1.5389 13 6 2.8769 -8.6459 -1.7373 14 6 3.8673 -9.6618 -2.3101 15 6 3.1732 -10.9851 -2.5050 16 1 2.1300 -11.0909 -2.2465 17 6 3.8697 -12.0606 -3.0141 18 7 5.1401 -11.9316 -3.3293 19 14 3.0092 -13.7007 -3.2563 20 1 1.5919 -13.5840 -2.8289 21 1 3.0634 -14.0811 -4.6908 22 1 3.6882 -14.7409 -2.4424 23 6 2.5119 -1.9863 -1.2182 24 6 2.9496 -2.5756 -2.3981 25 6 2.9038 -1.8795 -3.5881 26 6 2.4190 -0.5847 -3.6077 27 6 1.9826 0.0011 -2.4377 28 6 2.0267 -0.6988 -1.2386 29 1 -0.3634 0.5221 0.8852 30 1 -0.3634 0.5056 -0.8946 31 1 -0.3634 -1.0275 0.0096 32 1 3.1244 1.4486 0.0096 33 1 1.6770 1.9542 -0.8946 34 1 1.6614 1.9596 0.8852 35 1 1.5383 -0.2964 2.1341 36 1 3.1118 -0.5766 1.3446 37 1 0.6581 -2.3264 0.8575 38 1 1.8989 -2.7005 2.0815 39 1 1.2429 -4.4347 -0.0605 40 1 1.7155 -6.5916 -0.8178 41 1 3.9566 -6.9442 -2.4977 42 1 4.4147 -7.4274 -0.8469 43 1 2.5017 -9.0044 -0.7787 44 1 2.0443 -8.5207 -2.4294 45 1 4.2421 -9.3031 -3.2687 46 1 4.7002 -9.7871 -1.6182 47 1 5.6302 -12.6883 -3.6872 48 1 3.3283 -3.5869 -2.3837 49 1 3.2453 -2.3441 -4.5012 50 1 2.3825 -0.0338 -4.5360 51 1 1.6037 1.0123 -2.4540 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170885249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:19 Heat of formation + Delta-G solvation = -51.837735 kcal Electronic energy + Delta-G solvation = -28154.661843 eV Core-core repulsion = 24437.675313 eV Total energy + Delta-G solvation = -3716.986530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.97146 -40.63056 -37.77577 -37.24378 -36.23142 -35.20474 -33.46458 -32.28037 -31.19992 -30.78629 -28.62055 -28.08022 -26.66577 -24.81104 -23.95099 -23.74955 -22.31295 -22.00195 -21.68113 -19.74858 -19.14915 -18.54371 -17.91194 -17.33738 -16.66438 -16.51334 -16.46137 -16.21776 -15.71181 -15.44474 -15.32378 -15.17962 -14.73764 -14.48262 -14.29963 -14.13119 -13.78682 -13.72547 -13.46874 -13.43056 -13.01899 -12.85611 -12.78103 -12.65199 -12.55549 -12.55271 -12.35578 -12.31204 -12.17736 -11.68634 -11.65674 -11.51229 -11.31919 -11.25473 -11.18241 -11.10628 -10.56702 -10.35545 -9.84462 -9.65318 -9.53240 -8.20030 -6.31496 0.40241 0.47947 1.41169 1.41445 1.54704 1.70952 2.11882 2.41454 2.84462 3.13668 3.30314 3.60727 3.66918 3.88150 3.91598 4.03791 4.16014 4.20864 4.22189 4.25528 4.37585 4.41241 4.50487 4.55270 4.62304 4.65937 4.80210 4.88811 4.92838 4.94999 4.98094 5.00904 5.06172 5.10982 5.15165 5.16042 5.19096 5.21106 5.29750 5.38526 5.46093 5.47164 5.53795 5.58343 5.63598 5.68668 5.70364 5.78498 5.83850 6.00615 6.13139 6.22161 6.85999 7.10010 7.38004 7.56885 8.92364 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.002045 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.908323 B =13691.440245 C =14208.136733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 C -0.141 4.141 4 C -0.105 4.105 5 C -0.119 4.119 6 C 0.206 3.794 7 H 0.070 0.930 8 N -0.725 5.725 9 C 0.699 3.301 10 O -0.632 6.632 11 N -0.730 5.730 12 C 0.151 3.849 13 C -0.100 4.100 14 C 0.023 3.977 15 C -0.539 4.539 16 H 0.067 0.933 17 C -0.006 4.006 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.258 1.258 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.104 4.104 24 C -0.130 4.130 25 C -0.147 4.147 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.057 4.057 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.412 0.588 40 H 0.411 0.589 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.067 0.933 45 H -0.009 1.009 46 H -0.008 1.008 47 H 0.263 0.737 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.141 0.859 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 30.123 9.525 34.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 C -0.198 4.198 4 C -0.143 4.143 5 C -0.156 4.156 6 C 0.101 3.899 7 H 0.088 0.912 8 N -0.381 5.381 9 C 0.399 3.601 10 O -0.514 6.514 11 N -0.386 5.386 12 C 0.026 3.974 13 C -0.138 4.138 14 C -0.014 4.014 15 C -0.577 4.577 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.106 4.106 24 C -0.148 4.148 25 C -0.165 4.165 26 C -0.139 4.139 27 C -0.145 4.145 28 C -0.058 4.058 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.249 0.751 40 H 0.248 0.752 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.009 0.991 46 H 0.011 0.989 47 H 0.072 0.928 48 H 0.124 0.876 49 H 0.135 0.865 50 H 0.158 0.842 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.891 30.309 9.279 34.218 hybrid contribution -0.119 -1.667 -0.721 1.821 sum -13.010 28.641 8.558 32.601 Atomic orbital electron populations 1.21930 0.92364 1.02240 1.02774 1.19519 0.96577 0.95286 0.91079 1.21965 1.00789 0.93933 1.03069 1.21642 1.01520 0.93367 0.97759 1.21877 0.99923 0.96517 0.97314 1.19609 0.99561 0.78619 0.92131 0.91221 1.45063 1.13665 1.10082 1.69242 1.16153 0.84727 0.81109 0.78122 1.90898 1.19850 1.79735 1.60891 1.45049 1.15256 1.09208 1.69080 1.21055 0.91477 0.87666 0.97168 1.21583 0.98725 0.92133 1.01324 1.18946 0.94402 0.93561 0.94536 1.21703 0.97476 0.96366 1.42138 0.91488 1.26053 0.95585 1.03452 0.95226 1.70124 1.10023 1.32526 1.44899 0.85345 0.79078 0.78559 0.77723 1.18143 1.20618 1.20553 1.20095 1.00360 0.95055 0.95047 1.21626 0.98983 1.00674 0.93562 1.21262 1.01345 0.96097 0.97803 1.21359 0.98441 0.94612 0.99453 1.21461 1.00497 1.00774 0.91730 1.19770 0.97434 0.92519 0.96045 0.90445 0.92528 0.92631 0.93400 0.91662 0.90586 0.88293 0.92129 0.89264 0.89531 0.75138 0.75237 0.93797 0.93481 0.91260 0.91475 0.99053 0.98932 0.92825 0.87625 0.86512 0.84159 0.83660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.18 71.98 0.59 -0.61 16 2 C -0.02 -0.28 0.63 -53.03 -0.03 -0.32 16 3 C -0.14 -1.31 7.98 71.98 0.57 -0.73 16 4 C -0.11 -1.12 4.69 30.62 0.14 -0.98 16 5 C -0.12 -1.46 5.39 30.62 0.16 -1.30 16 6 C 0.21 4.34 2.59 44.14 0.11 4.45 16 7 H 0.07 1.87 7.56 -2.39 -0.02 1.85 16 8 N -0.72 -15.69 4.84 -461.94 -2.24 -17.93 16 9 C 0.70 21.44 7.07 179.05 1.27 22.71 16 10 O -0.63 -25.36 14.14 -3.99 -0.06 -25.42 16 11 N -0.73 -20.99 5.56 -478.52 -2.66 -23.65 16 12 C 0.15 5.54 5.67 86.38 0.49 6.03 16 13 C -0.10 -3.90 5.27 30.60 0.16 -3.74 16 14 C 0.02 1.23 4.97 29.85 0.15 1.38 16 15 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 17 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 18 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 19 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 C -0.10 -2.44 5.55 -19.86 -0.11 -2.55 16 24 C -0.13 -3.77 9.01 22.37 0.20 -3.57 16 25 C -0.15 -3.75 10.05 22.20 0.22 -3.53 16 26 C -0.12 -2.40 10.05 22.21 0.22 -2.18 16 27 C -0.13 -2.20 8.88 22.36 0.20 -2.00 16 28 C -0.06 -1.04 4.70 -19.87 -0.09 -1.13 16 29 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.06 0.51 8.05 -2.39 -0.02 0.50 16 31 H 0.05 0.54 6.43 -2.39 -0.02 0.52 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.53 6.36 -2.39 -0.02 0.52 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 0.62 8.12 -2.39 -0.02 0.60 16 36 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 37 H 0.09 0.88 6.25 -2.39 -0.01 0.86 16 38 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.41 6.09 8.61 -92.71 -0.80 5.29 16 40 H 0.41 8.87 8.49 -92.71 -0.79 8.08 16 41 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H -0.01 -0.52 8.14 -2.39 -0.02 -0.53 16 46 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 47 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 48 H 0.11 3.71 4.43 -2.91 -0.01 3.70 16 49 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 50 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 51 H 0.15 1.72 6.32 -2.91 -0.02 1.70 16 Total: -1.00 -74.79 396.22 1.66 -73.13 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.65 Total: 23.15 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 4.96 Total: -18.02 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -4.61 Total: -99.00 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.06 Total: -25.42 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -74.79 1.66 -73.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170885249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.292 kcal (2) G-P(sol) polarization free energy of solvation -74.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds