Wall clock time and date at job start Tue Mar 31 2020 16:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46932 * 2 1 4 4 C 1.38238 * 119.99864 * 90.00245 * 3 2 1 5 5 C 1.38237 * 119.99658 * 179.72352 * 4 3 2 6 6 C 1.38231 * 120.00456 * 0.27770 * 5 4 3 7 7 C 1.50695 * 120.00008 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46916 * 90.00485 * 7 6 5 9 9 C 1.34776 * 119.99781 * 269.99924 * 8 7 6 10 10 O 1.21580 * 120.00334 * 4.93837 * 9 8 7 11 11 N 1.34780 * 119.99940 * 184.94020 * 9 8 7 12 12 C 1.46497 * 120.00122 * 185.03385 * 11 9 8 13 13 C 1.52999 * 109.47121 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46999 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47155 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99957 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99907 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00081 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99741 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46942 * 89.99953 * 19 17 15 21 21 H 1.48493 * 109.46877 * 209.99941 * 19 17 15 22 22 H 1.48505 * 109.47032 * 330.00062 * 19 17 15 23 23 C 1.46499 * 119.99983 * 89.99682 * 8 7 6 24 24 C 1.52998 * 117.49888 * 2.55693 * 23 8 7 25 25 C 1.52997 * 117.50062 * 293.93425 * 23 8 7 26 26 C 1.38237 * 119.99785 * 359.95684 * 6 5 4 27 27 C 1.38230 * 120.00085 * 0.02562 * 26 6 5 28 28 H 1.09001 * 109.47169 * 299.99571 * 1 2 3 29 29 H 1.09002 * 109.47288 * 60.00002 * 1 2 3 30 30 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46726 * 240.00584 * 2 1 3 32 32 H 1.08994 * 109.47543 * 120.00009 * 2 1 3 33 33 H 1.08001 * 120.00022 * 359.97438 * 4 3 2 34 34 H 1.08003 * 119.99228 * 180.25736 * 5 4 3 35 35 H 1.09004 * 109.47010 * 210.00125 * 7 6 5 36 36 H 1.08996 * 109.47315 * 330.00503 * 7 6 5 37 37 H 0.97000 * 119.99709 * 5.03260 * 11 9 8 38 38 H 1.09006 * 109.47181 * 299.99814 * 12 11 9 39 39 H 1.08994 * 109.47031 * 59.99596 * 12 11 9 40 40 H 1.08998 * 109.47045 * 299.99868 * 13 12 11 41 41 H 1.09001 * 109.47198 * 60.00219 * 13 12 11 42 42 H 1.08998 * 109.47270 * 299.99921 * 14 13 12 43 43 H 1.09004 * 109.47436 * 59.99767 * 14 13 12 44 44 H 0.97003 * 119.99653 * 179.97438 * 18 17 15 45 45 H 1.09003 * 115.54769 * 148.26906 * 23 8 7 46 46 H 1.08994 * 117.50044 * 0.02562 * 24 23 8 47 47 H 1.09006 * 117.49283 * 145.01968 * 24 23 8 48 48 H 1.09000 * 117.50161 * 214.98301 * 25 23 8 49 49 H 1.08998 * 117.50121 * 359.97438 * 25 23 8 50 50 H 1.08001 * 119.99945 * 180.02562 * 26 6 5 51 51 H 1.08005 * 120.00221 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7289 3.3738 1.1971 6 6 2.9592 4.0255 0.0001 7 6 3.4669 5.4444 0.0001 8 7 4.9319 5.4389 -0.0031 9 6 5.6083 5.4353 1.1627 10 8 5.0057 5.3461 2.2149 11 7 6.9527 5.5308 1.1620 12 6 7.6958 5.4162 2.4193 13 6 9.1934 5.5600 2.1415 14 6 9.9694 5.4410 3.4547 15 6 11.4447 5.5821 3.1810 16 1 11.7938 5.7411 2.1715 17 6 12.3486 5.5080 4.2195 18 7 11.9235 5.3149 5.4489 19 14 14.1773 5.6821 3.8801 20 1 14.5642 7.1128 3.9739 21 1 14.9434 4.8956 4.8799 22 1 14.4781 5.1764 2.5166 23 6 5.6616 5.4371 -1.2734 24 6 4.8381 5.5017 -2.5612 25 6 5.5314 4.1978 -2.1612 26 6 2.7242 3.3756 -1.1971 27 6 2.2584 2.0741 -1.1971 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0824 1.5634 2.1325 34 1 2.9129 3.8814 2.1325 35 1 3.1036 5.9603 -0.8887 36 1 3.1075 5.9589 0.8913 37 1 7.4282 5.6753 0.3290 38 1 7.3763 6.2027 3.1031 39 1 7.5011 4.4427 2.8690 40 1 9.5132 4.7739 1.4576 41 1 9.3878 6.5339 1.6921 42 1 9.6496 6.2275 4.1383 43 1 9.7752 4.4674 3.9047 44 1 12.5595 5.2625 6.1794 45 1 6.6230 5.9506 -1.2640 46 1 3.7535 5.5460 -2.4634 47 1 5.2577 6.0582 -3.3994 48 1 6.4070 3.8963 -2.7361 49 1 4.9032 3.3837 -1.7999 50 1 2.9045 3.8846 -2.1324 51 1 2.0751 1.5661 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171449528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:17 Heat of formation + Delta-G solvation = 7.079452 kcal Electronic energy + Delta-G solvation = -27811.440466 eV Core-core repulsion = 24097.008777 eV Total energy + Delta-G solvation = -3714.431689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.64167 -39.32469 -37.64983 -35.55047 -34.71462 -33.34950 -33.16146 -31.31143 -31.03723 -30.05213 -27.10172 -25.91007 -23.54963 -23.07616 -22.90650 -22.71068 -22.28190 -20.82919 -20.54930 -19.28850 -18.25202 -16.89992 -16.43973 -16.09289 -15.68129 -15.59598 -15.24022 -15.01336 -14.64439 -14.41664 -14.17867 -14.05965 -13.99315 -13.80043 -13.39423 -13.14936 -12.86481 -12.46898 -12.32503 -12.20716 -11.93626 -11.76534 -11.71188 -11.60264 -11.37870 -11.33110 -11.00980 -10.92896 -10.89237 -10.86665 -10.66545 -10.57874 -10.01825 -9.83947 -9.43157 -9.11204 -8.99924 -8.86671 -8.70303 -8.38548 -8.35845 -6.00549 -4.03487 1.11096 1.30832 2.67087 3.22163 3.31384 3.37684 3.40469 3.61382 3.66407 3.95760 4.44952 4.48110 4.52127 4.52661 4.60595 4.65576 4.77406 4.83602 4.88175 5.06178 5.08615 5.21473 5.28350 5.35160 5.38946 5.44012 5.48638 5.54258 5.59669 5.66584 5.72639 5.73977 5.83617 5.84321 5.86124 5.94444 5.97973 6.21195 6.28725 6.34530 6.48740 6.52626 6.57713 6.64930 6.83010 6.89833 7.04415 7.04905 7.65463 7.78589 7.98518 8.09517 8.39555 8.75088 9.03173 9.60456 11.10733 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.002203 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.871274 B =12709.731727 C =13499.915021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.080 4.080 4 C -0.122 4.122 5 C -0.085 4.085 6 C -0.111 4.111 7 C 0.169 3.831 8 N -0.600 5.600 9 C 0.709 3.291 10 O -0.586 6.586 11 N -0.739 5.739 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.072 3.928 24 C -0.185 4.185 25 C -0.198 4.198 26 C -0.109 4.109 27 C -0.126 4.126 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.393 0.607 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 45 H 0.125 0.875 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.100 0.900 49 H 0.106 0.894 50 H 0.122 0.878 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.079 -5.114 -18.393 29.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.080 4.080 4 C -0.140 4.140 5 C -0.104 4.104 6 C -0.112 4.112 7 C 0.047 3.953 8 N -0.336 5.336 9 C 0.410 3.590 10 O -0.464 6.464 11 N -0.394 5.394 12 C 0.011 3.989 13 C -0.158 4.158 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.033 4.033 24 C -0.223 4.223 25 C -0.236 4.236 26 C -0.127 4.127 27 C -0.144 4.144 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.228 0.772 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.143 0.857 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.124 0.876 50 H 0.140 0.860 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -23.431 -5.187 -17.365 29.622 hybrid contribution 1.391 0.082 -0.576 1.508 sum -22.039 -5.105 -17.941 28.874 Atomic orbital electron populations 1.21739 0.94747 1.01613 1.02189 1.20551 0.96144 0.92828 1.02834 1.19911 0.98796 0.96038 0.93287 1.21068 1.00346 0.95051 0.97490 1.21265 0.96192 0.94475 0.98428 1.20237 1.00400 0.97196 0.93361 1.20221 0.78570 0.92799 1.03743 1.46600 1.05284 1.78197 1.03494 1.15854 0.82161 0.77746 0.83202 1.90887 1.68018 1.57807 1.29656 1.45482 1.04602 1.77431 1.11894 1.21507 0.91905 1.01617 0.83823 1.21883 0.91188 1.00696 1.02029 1.19023 0.94075 0.97618 0.90621 1.21203 0.91584 1.49579 0.93624 0.92672 1.25035 0.99011 0.95318 0.95153 1.69967 1.34435 1.49705 0.99139 0.86583 0.85291 0.78050 0.77993 1.20675 1.21216 1.19916 1.21614 0.97446 1.02503 0.81758 1.23372 0.99830 1.01588 0.97505 1.23654 1.03698 0.92770 1.03513 1.21087 0.99210 0.94965 0.97449 1.20932 1.01129 0.94987 0.97349 0.92521 0.92635 0.92474 0.91148 0.91031 0.86245 0.85101 0.89712 0.88857 0.77238 0.91893 0.92101 0.92831 0.92817 0.96243 0.96270 0.92941 0.85722 0.88023 0.87736 0.88134 0.87572 0.86030 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.59 16 2 C -0.09 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.08 -0.78 5.13 -104.62 -0.54 -1.31 16 4 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 5 C -0.09 -1.05 9.57 -39.58 -0.38 -1.43 16 6 C -0.11 -1.21 5.27 -104.63 -0.55 -1.76 16 7 C 0.17 1.80 5.06 -5.19 -0.03 1.78 16 8 N -0.60 -7.20 2.78 -173.17 -0.48 -7.68 16 9 C 0.71 11.25 8.26 -86.92 -0.72 10.54 16 10 O -0.59 -11.28 15.18 5.30 0.08 -11.20 16 11 N -0.74 -11.31 5.44 -65.23 -0.36 -11.67 16 12 C 0.13 2.46 5.68 -4.04 -0.02 2.44 16 13 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 23 C 0.07 0.66 5.98 -67.93 -0.41 0.26 16 24 C -0.19 -1.24 9.20 -26.73 -0.25 -1.49 16 25 C -0.20 -1.62 9.73 -26.73 -0.26 -1.88 16 26 C -0.11 -1.01 7.01 -39.58 -0.28 -1.28 16 27 C -0.13 -1.15 9.70 -39.58 -0.38 -1.53 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.81 7.38 -52.48 -0.39 1.43 16 35 H 0.08 0.68 5.95 -51.93 -0.31 0.37 16 36 H 0.09 1.11 7.44 -51.93 -0.39 0.73 16 37 H 0.39 5.00 6.29 -40.82 -0.26 4.74 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.13 1.04 6.60 -51.93 -0.34 0.69 16 46 H 0.10 0.63 4.58 -51.93 -0.24 0.39 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.11 1.02 5.36 -51.93 -0.28 0.75 16 50 H 0.12 0.90 5.44 -52.49 -0.29 0.62 16 51 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 405.56 15.07 6.11 6.11 Total: -1.00 -32.83 405.56 -11.98 -44.80 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -8.36 Total: 3.61 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -4.68 Total: -14.32 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.10 Total: -45.58 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.83 -11.98 -44.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.883 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds