Wall clock time and date at job start Tue Mar 31 2020 16:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46932 * 2 1 4 4 C 1.38238 * 119.99864 * 90.00245 * 3 2 1 5 5 C 1.38237 * 119.99658 * 179.72352 * 4 3 2 6 6 C 1.38231 * 120.00456 * 0.27770 * 5 4 3 7 7 C 1.50695 * 120.00008 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.46916 * 90.00485 * 7 6 5 9 9 C 1.34776 * 119.99781 * 269.99924 * 8 7 6 10 10 O 1.21580 * 120.00334 * 4.93837 * 9 8 7 11 11 N 1.34780 * 119.99940 * 184.94020 * 9 8 7 12 12 C 1.46497 * 120.00122 * 185.03385 * 11 9 8 13 13 C 1.52999 * 109.47121 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46999 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47155 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99957 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99907 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00081 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99741 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46942 * 89.99953 * 19 17 15 21 21 H 1.48493 * 109.46877 * 209.99941 * 19 17 15 22 22 H 1.48505 * 109.47032 * 330.00062 * 19 17 15 23 23 C 1.46499 * 119.99983 * 89.99682 * 8 7 6 24 24 C 1.52998 * 117.49888 * 2.55693 * 23 8 7 25 25 C 1.52997 * 117.50062 * 293.93425 * 23 8 7 26 26 C 1.38237 * 119.99785 * 359.95684 * 6 5 4 27 27 C 1.38230 * 120.00085 * 0.02562 * 26 6 5 28 28 H 1.09001 * 109.47169 * 299.99571 * 1 2 3 29 29 H 1.09002 * 109.47288 * 60.00002 * 1 2 3 30 30 H 1.08995 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46726 * 240.00584 * 2 1 3 32 32 H 1.08994 * 109.47543 * 120.00009 * 2 1 3 33 33 H 1.08001 * 120.00022 * 359.97438 * 4 3 2 34 34 H 1.08003 * 119.99228 * 180.25736 * 5 4 3 35 35 H 1.09004 * 109.47010 * 210.00125 * 7 6 5 36 36 H 1.08996 * 109.47315 * 330.00503 * 7 6 5 37 37 H 0.97000 * 119.99709 * 5.03260 * 11 9 8 38 38 H 1.09006 * 109.47181 * 299.99814 * 12 11 9 39 39 H 1.08994 * 109.47031 * 59.99596 * 12 11 9 40 40 H 1.08998 * 109.47045 * 299.99868 * 13 12 11 41 41 H 1.09001 * 109.47198 * 60.00219 * 13 12 11 42 42 H 1.08998 * 109.47270 * 299.99921 * 14 13 12 43 43 H 1.09004 * 109.47436 * 59.99767 * 14 13 12 44 44 H 0.97003 * 119.99653 * 179.97438 * 18 17 15 45 45 H 1.09003 * 115.54769 * 148.26906 * 23 8 7 46 46 H 1.08994 * 117.50044 * 0.02562 * 24 23 8 47 47 H 1.09006 * 117.49283 * 145.01968 * 24 23 8 48 48 H 1.09000 * 117.50161 * 214.98301 * 25 23 8 49 49 H 1.08998 * 117.50121 * 359.97438 * 25 23 8 50 50 H 1.08001 * 119.99945 * 180.02562 * 26 6 5 51 51 H 1.08005 * 120.00221 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7289 3.3738 1.1971 6 6 2.9592 4.0255 0.0001 7 6 3.4669 5.4444 0.0001 8 7 4.9319 5.4389 -0.0031 9 6 5.6083 5.4353 1.1627 10 8 5.0057 5.3461 2.2149 11 7 6.9527 5.5308 1.1620 12 6 7.6958 5.4162 2.4193 13 6 9.1934 5.5600 2.1415 14 6 9.9694 5.4410 3.4547 15 6 11.4447 5.5821 3.1810 16 1 11.7938 5.7411 2.1715 17 6 12.3486 5.5080 4.2195 18 7 11.9235 5.3149 5.4489 19 14 14.1773 5.6821 3.8801 20 1 14.5642 7.1128 3.9739 21 1 14.9434 4.8956 4.8799 22 1 14.4781 5.1764 2.5166 23 6 5.6616 5.4371 -1.2734 24 6 4.8381 5.5017 -2.5612 25 6 5.5314 4.1978 -2.1612 26 6 2.7242 3.3756 -1.1971 27 6 2.2584 2.0741 -1.1971 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0824 1.5634 2.1325 34 1 2.9129 3.8814 2.1325 35 1 3.1036 5.9603 -0.8887 36 1 3.1075 5.9589 0.8913 37 1 7.4282 5.6753 0.3290 38 1 7.3763 6.2027 3.1031 39 1 7.5011 4.4427 2.8690 40 1 9.5132 4.7739 1.4576 41 1 9.3878 6.5339 1.6921 42 1 9.6496 6.2275 4.1383 43 1 9.7752 4.4674 3.9047 44 1 12.5595 5.2625 6.1794 45 1 6.6230 5.9506 -1.2640 46 1 3.7535 5.5460 -2.4634 47 1 5.2577 6.0582 -3.3994 48 1 6.4070 3.8963 -2.7361 49 1 4.9032 3.3837 -1.7999 50 1 2.9045 3.8846 -2.1324 51 1 2.0751 1.5661 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171449528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:15 Heat of formation + Delta-G solvation = -9.954298 kcal Electronic energy + Delta-G solvation = -27812.179105 eV Core-core repulsion = 24097.008777 eV Total energy + Delta-G solvation = -3715.170328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.64173 -40.25029 -38.54123 -37.03467 -35.59484 -35.10022 -34.15808 -32.99003 -31.83749 -30.99572 -28.65051 -27.07180 -24.95386 -24.01173 -23.69223 -23.59542 -23.05853 -22.28543 -21.64449 -20.39274 -19.30679 -18.51385 -17.71718 -17.27584 -16.69117 -16.51673 -16.45506 -16.23310 -15.89072 -15.57227 -15.42715 -15.24853 -14.72857 -14.59974 -14.30368 -14.16616 -13.99368 -13.77881 -13.57944 -13.48806 -13.12948 -13.04809 -12.75044 -12.58695 -12.52605 -12.36321 -12.26319 -12.12129 -11.96219 -11.81113 -11.68481 -11.64112 -11.59058 -11.47125 -11.23518 -11.05451 -10.55715 -10.17907 -9.80002 -9.54456 -9.34155 -8.19468 -6.31110 0.30443 0.49571 1.41355 1.43123 1.53963 1.63187 2.06673 2.41605 2.77739 2.89723 2.98095 3.14114 3.76898 3.80986 3.86013 3.95456 4.00132 4.06407 4.09894 4.13546 4.18832 4.21950 4.37657 4.47326 4.53624 4.54399 4.63593 4.69092 4.71853 4.81006 4.88141 4.94300 4.99800 5.04309 5.07217 5.09795 5.15010 5.16147 5.19677 5.28465 5.36454 5.46271 5.46596 5.50382 5.54591 5.68383 5.69981 5.72041 5.83589 5.92420 6.10986 6.22134 6.85697 6.96026 7.38296 7.53357 8.92729 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.002203 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.871274 B =12709.731727 C =13499.915021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.111 4.111 6 C -0.119 4.119 7 C 0.168 3.832 8 N -0.591 5.591 9 C 0.701 3.299 10 O -0.629 6.629 11 N -0.730 5.730 12 C 0.151 3.849 13 C -0.099 4.099 14 C 0.024 3.976 15 C -0.540 4.540 16 H 0.067 0.933 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.260 1.260 23 C 0.042 3.958 24 C -0.157 4.157 25 C -0.198 4.198 26 C -0.100 4.100 27 C -0.126 4.126 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.408 0.592 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.068 0.932 42 H -0.008 1.008 43 H -0.009 1.009 44 H 0.263 0.737 45 H 0.134 0.866 46 H 0.110 0.890 47 H 0.128 0.872 48 H 0.112 0.888 49 H 0.092 0.908 50 H 0.147 0.853 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.802 -5.294 -22.657 32.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.156 4.156 5 C -0.129 4.129 6 C -0.121 4.121 7 C 0.046 3.954 8 N -0.325 5.325 9 C 0.403 3.597 10 O -0.510 6.510 11 N -0.386 5.386 12 C 0.026 3.974 13 C -0.137 4.137 14 C -0.013 4.013 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.184 1.184 23 C -0.062 4.062 24 C -0.194 4.194 25 C -0.236 4.236 26 C -0.118 4.118 27 C -0.144 4.144 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.089 0.911 37 H 0.246 0.754 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.010 0.990 43 H 0.009 0.991 44 H 0.072 0.928 45 H 0.152 0.848 46 H 0.128 0.872 47 H 0.146 0.854 48 H 0.130 0.870 49 H 0.111 0.889 50 H 0.165 0.835 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.168 -5.363 -21.707 32.198 hybrid contribution 1.226 0.103 0.739 1.435 sum -21.941 -5.259 -20.968 30.802 Atomic orbital electron populations 1.21716 0.93891 1.02436 1.01935 1.20599 0.96815 0.91463 1.03411 1.20194 0.98114 0.97066 0.92937 1.21171 1.01061 0.94813 0.98513 1.21192 0.98238 0.95389 0.98129 1.20273 1.00934 0.97337 0.93535 1.20340 0.77801 0.92990 1.04272 1.46566 1.05754 1.76770 1.03414 1.16066 0.82107 0.77636 0.83894 1.90864 1.68812 1.59592 1.31745 1.45143 1.04572 1.77577 1.11348 1.21053 0.91364 1.00028 0.84929 1.21576 0.91119 1.01943 0.99048 1.18933 0.94497 0.95011 0.92886 1.21669 0.92676 1.49187 0.94254 0.91453 1.26055 1.04534 0.94842 0.94844 1.70119 1.36322 1.50820 1.00293 0.85392 0.78627 0.78304 0.78375 1.19786 1.21059 1.18352 1.21944 0.98578 1.04451 0.81243 1.23490 1.00050 0.99918 0.95975 1.23643 1.04325 0.92544 1.03100 1.21309 0.98003 0.95046 0.97473 1.21296 1.00036 0.94986 0.98091 0.93436 0.92231 0.91123 0.89727 0.91306 0.86285 0.88075 0.86348 0.91093 0.75417 0.93548 0.93926 0.91492 0.91323 0.98968 0.99081 0.92823 0.84839 0.87198 0.85407 0.86952 0.88919 0.83498 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 71.98 0.71 -0.94 16 2 C -0.09 -1.18 6.06 29.85 0.18 -1.00 16 3 C -0.08 -1.54 5.13 -19.86 -0.10 -1.64 16 4 C -0.14 -3.20 9.70 22.27 0.22 -2.98 16 5 C -0.11 -2.95 9.57 22.27 0.21 -2.73 16 6 C -0.12 -2.60 5.27 -19.87 -0.10 -2.71 16 7 C 0.17 3.52 5.06 85.63 0.43 3.95 16 8 N -0.59 -13.82 2.78 -820.06 -2.28 -16.11 16 9 C 0.70 22.86 8.26 179.05 1.48 24.34 16 10 O -0.63 -25.84 15.18 -3.97 -0.06 -25.90 16 11 N -0.73 -22.40 5.44 -478.55 -2.61 -25.00 16 12 C 0.15 5.71 5.68 86.38 0.49 6.20 16 13 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 14 C 0.02 1.30 4.97 29.85 0.15 1.45 16 15 C -0.54 -30.47 9.11 25.60 0.23 -30.23 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 17 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 18 N -0.94 -57.82 13.29 21.45 0.28 -57.53 16 19 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 C 0.04 0.66 5.98 44.99 0.27 0.93 16 24 C -0.16 -1.44 9.20 30.59 0.28 -1.16 16 25 C -0.20 -2.62 9.73 30.59 0.30 -2.32 16 26 C -0.10 -1.64 7.01 22.27 0.16 -1.48 16 27 C -0.13 -2.01 9.70 22.27 0.22 -1.80 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.93 8.09 -2.39 -0.02 0.92 16 32 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 33 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.10 3.22 7.38 -2.91 -0.02 3.20 16 35 H 0.12 1.62 5.95 -2.38 -0.01 1.60 16 36 H 0.07 1.80 7.44 -2.39 -0.02 1.78 16 37 H 0.41 9.84 6.29 -92.71 -0.58 9.26 16 38 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.13 1.85 6.60 -2.39 -0.02 1.84 16 46 H 0.11 0.85 4.58 -2.39 -0.01 0.84 16 47 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.09 1.53 5.36 -2.39 -0.01 1.52 16 50 H 0.15 1.60 5.44 -2.91 -0.02 1.58 16 51 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -74.43 405.56 3.44 -70.99 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.34 Total: 23.14 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 5.74 Total: -15.73 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -4.60 Total: -98.64 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -74.43 3.44 -70.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.034 kcal (2) G-P(sol) polarization free energy of solvation -74.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds