Wall clock time and date at job start Tue Mar 31 2020 16:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.50020 * 2 1 4 4 C 1.38239 * 120.00273 * 239.66446 * 3 2 1 5 5 C 1.38233 * 120.00362 * 179.78370 * 4 3 2 6 6 C 1.38236 * 119.99946 * 0.46038 * 5 4 3 7 7 C 1.38240 * 119.99792 * 359.77257 * 6 5 4 8 8 C 1.38232 * 119.99840 * 0.02562 * 7 6 5 9 9 C 1.53031 * 109.49850 * 239.93300 * 2 1 3 10 10 C 1.53045 * 109.53944 * 301.38182 * 9 2 1 11 11 C 1.53197 * 109.30998 * 298.63244 * 10 9 2 12 12 N 1.46928 * 108.77401 * 54.63646 * 11 10 9 13 13 C 1.34776 * 120.63352 * 126.36369 * 12 11 10 14 14 O 1.21590 * 120.00076 * 185.22345 * 13 12 11 15 15 N 1.34776 * 120.00043 * 5.22685 * 13 12 11 16 16 C 1.46494 * 120.00396 * 175.01471 * 15 13 12 17 17 C 1.53001 * 109.47514 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.47272 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46928 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00263 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99956 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99776 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00186 * 179.72749 * 21 19 18 24 24 H 1.48507 * 109.46828 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47196 * 119.99789 * 23 21 19 26 26 H 1.48504 * 109.46909 * 239.99923 * 23 21 19 27 27 C 1.46931 * 118.73667 * 306.64204 * 12 11 10 28 28 H 1.08997 * 109.47428 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47241 * 300.07014 * 1 2 3 30 30 H 1.08998 * 109.46963 * 60.06591 * 1 2 3 31 31 H 1.07998 * 119.99305 * 359.97438 * 4 3 2 32 32 H 1.07995 * 120.00057 * 180.24882 * 5 4 3 33 33 H 1.07997 * 119.99940 * 179.78700 * 6 5 4 34 34 H 1.08004 * 119.99522 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.99275 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.46259 * 181.36110 * 9 2 1 37 37 H 1.08995 * 109.46313 * 61.40461 * 9 2 1 38 38 H 1.08997 * 109.49679 * 178.68780 * 10 9 2 39 39 H 1.09000 * 109.52155 * 58.60015 * 10 9 2 40 40 H 1.08996 * 109.58838 * 294.84871 * 11 10 9 41 41 H 1.08996 * 109.69919 * 174.48425 * 11 10 9 42 42 H 0.97003 * 119.99815 * 355.01221 * 15 13 12 43 43 H 1.08999 * 109.47167 * 59.99694 * 16 15 13 44 44 H 1.09000 * 109.47310 * 300.00159 * 16 15 13 45 45 H 1.09007 * 109.46672 * 60.00170 * 17 16 15 46 46 H 1.09000 * 109.47298 * 300.00579 * 17 16 15 47 47 H 1.09007 * 109.46877 * 60.00609 * 18 17 16 48 48 H 1.08992 * 109.47187 * 300.00262 * 18 17 16 49 49 H 0.97000 * 119.99625 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.58374 * 173.14745 * 27 12 11 51 51 H 1.08998 * 109.58404 * 293.56660 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4205 0.0000 4 6 2.8337 1.8703 -1.0332 5 6 3.2915 3.1746 -1.0355 6 6 2.9564 4.0265 0.0002 7 6 2.1597 3.5754 1.0360 8 6 1.6985 2.2723 1.0361 9 6 2.0408 -0.7227 -1.2484 10 6 1.5036 -2.1557 -1.2661 11 6 2.0154 -2.9038 -0.0310 12 7 1.6528 -2.1382 1.1695 13 6 0.9758 -2.7221 2.1780 14 8 0.5987 -2.0563 3.1229 15 7 0.7167 -4.0442 2.1391 16 6 0.0780 -4.6995 3.2831 17 6 -0.1020 -6.1889 2.9827 18 6 -0.7684 -6.8733 4.1778 19 6 -0.9451 -8.3404 3.8820 20 1 -0.6148 -8.7444 2.9365 21 6 -1.5286 -9.1671 4.8186 22 7 -1.9305 -8.6753 5.9703 23 14 -1.7546 -10.9842 4.4491 24 1 -1.2286 -11.2826 3.0927 25 1 -1.0164 -11.7894 5.4550 26 1 -3.1989 -11.3248 4.5055 27 6 2.0370 -0.7221 1.2470 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5149 0.8894 30 1 -0.3633 0.5128 -0.8906 31 1 3.0990 1.2034 -1.8402 32 1 3.9137 3.5271 -1.8448 33 1 3.3169 5.0446 0.0002 34 1 1.8983 4.2409 1.8454 35 1 1.0764 1.9198 1.8455 36 1 3.1305 -0.7436 -1.2357 37 1 1.6983 -0.1956 -2.1389 38 1 1.8488 -2.6625 -2.1672 39 1 0.4139 -2.1364 -1.2541 40 1 3.0993 -3.0035 -0.0873 41 1 1.5592 -3.8926 0.0148 42 1 0.9531 -4.5618 1.3535 43 1 -0.8961 -4.2455 3.4646 44 1 0.7048 -4.5799 4.1668 45 1 0.8721 -6.6431 2.8010 46 1 -0.7290 -6.3081 2.0990 47 1 -1.7425 -6.4191 4.3598 48 1 -0.1411 -6.7541 5.0610 49 1 -2.3406 -9.2569 6.6294 50 1 1.5933 -0.2712 2.1346 51 1 3.1228 -0.6403 1.2971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172148582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:52 Heat of formation + Delta-G solvation = -19.060803 kcal Electronic energy + Delta-G solvation = -28072.339707 eV Core-core repulsion = 24356.774492 eV Total energy + Delta-G solvation = -3715.565215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02158 -39.58512 -37.78174 -35.38820 -34.44125 -33.18335 -32.33875 -31.20442 -31.04027 -29.69507 -27.49619 -26.74719 -25.42795 -23.89419 -23.09053 -22.46661 -21.75326 -20.61813 -19.97072 -18.77130 -18.20935 -17.08389 -16.48185 -15.98002 -15.94187 -15.43214 -15.20024 -14.82399 -14.61090 -14.49850 -14.24996 -14.20018 -13.90068 -13.70431 -13.51870 -13.25855 -13.16208 -12.75088 -12.43273 -12.27723 -11.97752 -11.79251 -11.71031 -11.54786 -11.43586 -11.38453 -11.22379 -10.91500 -10.81023 -10.66167 -10.56088 -10.52407 -9.99843 -9.85270 -9.43287 -9.18680 -9.10502 -9.08376 -8.85871 -8.42006 -8.36765 -6.01255 -4.04229 1.07216 1.13099 2.70257 3.30112 3.34120 3.37577 3.40996 3.51624 3.96900 4.25881 4.29799 4.44863 4.56673 4.69937 4.72333 4.74390 4.77970 4.87263 4.93411 5.09464 5.17577 5.24583 5.34554 5.35691 5.45187 5.47504 5.52498 5.57404 5.63576 5.64908 5.73969 5.76863 5.80356 5.83037 5.87414 5.88905 6.10400 6.20037 6.21654 6.25143 6.36318 6.42903 6.56497 6.63851 6.73090 6.82649 7.03860 7.05476 7.65018 7.77793 7.97882 8.09629 8.38793 8.75917 9.02701 9.59887 11.10046 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.001929 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.665141 B =14509.312941 C =15092.456572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 C -0.066 4.066 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.118 4.118 8 C -0.112 4.112 9 C -0.109 4.109 10 C -0.138 4.138 11 C 0.110 3.890 12 N -0.631 5.631 13 C 0.705 3.295 14 O -0.591 6.591 15 N -0.742 5.742 16 C 0.134 3.866 17 C -0.120 4.120 18 C 0.024 3.976 19 C -0.521 4.521 20 H 0.056 0.944 21 C 0.056 3.944 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.145 3.855 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.392 0.608 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.260 0.740 50 H 0.096 0.904 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.420 23.367 -18.405 31.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.037 4.037 3 C -0.067 4.067 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.144 4.144 7 C -0.136 4.136 8 C -0.130 4.130 9 C -0.146 4.146 10 C -0.177 4.177 11 C -0.013 4.013 12 N -0.369 5.369 13 C 0.406 3.594 14 O -0.469 6.469 15 N -0.399 5.399 16 C 0.011 3.989 17 C -0.158 4.158 18 C -0.014 4.014 19 C -0.560 4.560 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.021 3.979 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.228 0.772 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.114 0.886 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.051 23.761 -17.489 31.505 hybrid contribution -0.019 -1.244 -0.542 1.357 sum 11.031 22.517 -18.031 30.884 Atomic orbital electron populations 1.21861 0.92962 1.02483 1.01842 1.19793 0.96660 0.90949 0.96280 1.19716 0.97333 0.94743 0.94894 1.21168 0.97984 0.95957 0.98627 1.21138 1.00179 0.93959 0.98613 1.21154 0.98846 0.99705 0.94721 1.21162 0.97926 0.95886 0.98585 1.21102 0.99947 0.93627 0.98370 1.21653 1.00605 0.95243 0.97098 1.22004 1.02019 0.95896 0.97738 1.21625 1.00263 0.94869 0.84582 1.47207 1.60261 1.11132 1.18272 1.15895 0.78635 0.82358 0.82481 1.90901 1.57686 1.63090 1.35186 1.45565 1.65946 1.07022 1.21319 1.21509 0.97104 0.93450 0.86830 1.21886 1.00850 0.91303 1.01758 1.19033 0.95763 0.94745 0.91867 1.21242 1.39507 0.93475 1.01734 0.92610 1.25038 0.95603 0.98772 0.95121 1.69982 1.41094 1.35424 1.06733 0.86529 0.77782 0.85330 0.78289 1.19781 1.21013 1.21013 1.21356 0.99000 0.79601 0.97895 0.91753 0.92283 0.92727 0.85672 0.86259 0.86331 0.86091 0.85826 0.91374 0.91264 0.90519 0.90823 0.91360 0.90214 0.77172 0.91926 0.92047 0.92827 0.92822 0.96226 0.96237 0.92995 0.88614 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 7.79 37.16 0.29 -1.00 16 2 C -0.04 -0.31 0.60 -155.77 -0.09 -0.40 16 3 C -0.07 -0.57 4.76 -104.62 -0.50 -1.07 16 4 C -0.12 -0.91 8.98 -39.58 -0.36 -1.27 16 5 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 6 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 7 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 8 C -0.11 -1.01 8.77 -39.59 -0.35 -1.35 16 9 C -0.11 -0.74 3.37 -26.69 -0.09 -0.83 16 10 C -0.14 -0.95 5.74 -26.61 -0.15 -1.10 16 11 C 0.11 0.92 6.39 -3.71 -0.02 0.89 16 12 N -0.63 -7.35 2.42 -178.76 -0.43 -7.78 16 13 C 0.70 11.10 8.30 -86.92 -0.72 10.38 16 14 O -0.59 -11.67 15.77 5.29 0.08 -11.59 16 15 N -0.74 -11.14 5.46 -65.23 -0.36 -11.50 16 16 C 0.13 2.43 5.68 -4.04 -0.02 2.41 16 17 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 23 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 27 C 0.15 1.56 4.81 -3.93 -0.02 1.54 16 28 H 0.06 0.69 5.97 -51.93 -0.31 0.38 16 29 H 0.06 0.62 7.39 -51.93 -0.38 0.24 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.13 0.76 5.90 -52.49 -0.31 0.45 16 32 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.12 1.11 7.18 -52.48 -0.38 0.73 16 36 H 0.07 0.43 7.58 -51.93 -0.39 0.03 16 37 H 0.07 0.43 7.44 -51.93 -0.39 0.04 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.58 6.34 -51.93 -0.33 0.25 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.63 5.64 -51.93 -0.29 0.34 16 42 H 0.39 4.80 5.96 -40.82 -0.24 4.56 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.10 1.23 6.46 -51.93 -0.34 0.89 16 51 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -33.07 395.44 -11.35 -44.42 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -8.40 Total: 1.31 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -3.92 Total: -11.17 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.05 Total: -45.43 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.07 -11.35 -44.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172148582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.360 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds