Wall clock time and date at job start Tue Mar 31 2020 16:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.50020 * 2 1 4 4 C 1.38239 * 120.00273 * 239.66446 * 3 2 1 5 5 C 1.38233 * 120.00362 * 179.78370 * 4 3 2 6 6 C 1.38236 * 119.99946 * 0.46038 * 5 4 3 7 7 C 1.38240 * 119.99792 * 359.77257 * 6 5 4 8 8 C 1.38232 * 119.99840 * 0.02562 * 7 6 5 9 9 C 1.53031 * 109.49850 * 239.93300 * 2 1 3 10 10 C 1.53045 * 109.53944 * 301.38182 * 9 2 1 11 11 C 1.53197 * 109.30998 * 298.63244 * 10 9 2 12 12 N 1.46928 * 108.77401 * 54.63646 * 11 10 9 13 13 C 1.34776 * 120.63352 * 126.36369 * 12 11 10 14 14 O 1.21590 * 120.00076 * 185.22345 * 13 12 11 15 15 N 1.34776 * 120.00043 * 5.22685 * 13 12 11 16 16 C 1.46494 * 120.00396 * 175.01471 * 15 13 12 17 17 C 1.53001 * 109.47514 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.47272 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46928 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00263 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99956 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99776 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00186 * 179.72749 * 21 19 18 24 24 H 1.48507 * 109.46828 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47196 * 119.99789 * 23 21 19 26 26 H 1.48504 * 109.46909 * 239.99923 * 23 21 19 27 27 C 1.46931 * 118.73667 * 306.64204 * 12 11 10 28 28 H 1.08997 * 109.47428 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47241 * 300.07014 * 1 2 3 30 30 H 1.08998 * 109.46963 * 60.06591 * 1 2 3 31 31 H 1.07998 * 119.99305 * 359.97438 * 4 3 2 32 32 H 1.07995 * 120.00057 * 180.24882 * 5 4 3 33 33 H 1.07997 * 119.99940 * 179.78700 * 6 5 4 34 34 H 1.08004 * 119.99522 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.99275 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.46259 * 181.36110 * 9 2 1 37 37 H 1.08995 * 109.46313 * 61.40461 * 9 2 1 38 38 H 1.08997 * 109.49679 * 178.68780 * 10 9 2 39 39 H 1.09000 * 109.52155 * 58.60015 * 10 9 2 40 40 H 1.08996 * 109.58838 * 294.84871 * 11 10 9 41 41 H 1.08996 * 109.69919 * 174.48425 * 11 10 9 42 42 H 0.97003 * 119.99815 * 355.01221 * 15 13 12 43 43 H 1.08999 * 109.47167 * 59.99694 * 16 15 13 44 44 H 1.09000 * 109.47310 * 300.00159 * 16 15 13 45 45 H 1.09007 * 109.46672 * 60.00170 * 17 16 15 46 46 H 1.09000 * 109.47298 * 300.00579 * 17 16 15 47 47 H 1.09007 * 109.46877 * 60.00609 * 18 17 16 48 48 H 1.08992 * 109.47187 * 300.00262 * 18 17 16 49 49 H 0.97000 * 119.99625 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.58374 * 173.14745 * 27 12 11 51 51 H 1.08998 * 109.58404 * 293.56660 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4205 0.0000 4 6 2.8337 1.8703 -1.0332 5 6 3.2915 3.1746 -1.0355 6 6 2.9564 4.0265 0.0002 7 6 2.1597 3.5754 1.0360 8 6 1.6985 2.2723 1.0361 9 6 2.0408 -0.7227 -1.2484 10 6 1.5036 -2.1557 -1.2661 11 6 2.0154 -2.9038 -0.0310 12 7 1.6528 -2.1382 1.1695 13 6 0.9758 -2.7221 2.1780 14 8 0.5987 -2.0563 3.1229 15 7 0.7167 -4.0442 2.1391 16 6 0.0780 -4.6995 3.2831 17 6 -0.1020 -6.1889 2.9827 18 6 -0.7684 -6.8733 4.1778 19 6 -0.9451 -8.3404 3.8820 20 1 -0.6148 -8.7444 2.9365 21 6 -1.5286 -9.1671 4.8186 22 7 -1.9305 -8.6753 5.9703 23 14 -1.7546 -10.9842 4.4491 24 1 -1.2286 -11.2826 3.0927 25 1 -1.0164 -11.7894 5.4550 26 1 -3.1989 -11.3248 4.5055 27 6 2.0370 -0.7221 1.2470 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5149 0.8894 30 1 -0.3633 0.5128 -0.8906 31 1 3.0990 1.2034 -1.8402 32 1 3.9137 3.5271 -1.8448 33 1 3.3169 5.0446 0.0002 34 1 1.8983 4.2409 1.8454 35 1 1.0764 1.9198 1.8455 36 1 3.1305 -0.7436 -1.2357 37 1 1.6983 -0.1956 -2.1389 38 1 1.8488 -2.6625 -2.1672 39 1 0.4139 -2.1364 -1.2541 40 1 3.0993 -3.0035 -0.0873 41 1 1.5592 -3.8926 0.0148 42 1 0.9531 -4.5618 1.3535 43 1 -0.8961 -4.2455 3.4646 44 1 0.7048 -4.5799 4.1668 45 1 0.8721 -6.6431 2.8010 46 1 -0.7290 -6.3081 2.0990 47 1 -1.7425 -6.4191 4.3598 48 1 -0.1411 -6.7541 5.0610 49 1 -2.3406 -9.2569 6.6294 50 1 1.5933 -0.2712 2.1346 51 1 3.1228 -0.6403 1.2971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172148582.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:51 Heat of formation + Delta-G solvation = -36.618561 kcal Electronic energy + Delta-G solvation = -28073.101069 eV Core-core repulsion = 24356.774492 eV Total energy + Delta-G solvation = -3716.326577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.89848 -40.49806 -38.62240 -36.96219 -35.51072 -34.92301 -33.05279 -32.86284 -31.73268 -30.38643 -28.84396 -27.89191 -26.52389 -24.84674 -24.43752 -23.27864 -22.40973 -22.27679 -21.08437 -19.62103 -19.20579 -18.49416 -17.73314 -17.29230 -16.97611 -16.48128 -16.22830 -16.06795 -15.62944 -15.45550 -15.36485 -15.30743 -14.77091 -14.46626 -14.42515 -14.26979 -14.07393 -13.86348 -13.69535 -13.49450 -13.38647 -13.09524 -12.78607 -12.72641 -12.54622 -12.34165 -12.24091 -12.08083 -12.01223 -11.85204 -11.67813 -11.61538 -11.44141 -11.23941 -11.18548 -11.04612 -10.55834 -10.23909 -9.77548 -9.70726 -9.37682 -8.19074 -6.30595 0.46936 0.54209 1.42048 1.42389 1.55458 1.61414 2.10114 2.42166 2.90775 2.93973 3.14727 3.57818 3.63518 3.93727 4.05996 4.08074 4.13572 4.18537 4.18929 4.22374 4.23431 4.33417 4.49626 4.51117 4.55603 4.64575 4.66487 4.77507 4.78046 4.84380 4.89487 4.95224 4.96466 5.01248 5.08070 5.15719 5.16624 5.18208 5.20383 5.24027 5.45130 5.46754 5.51205 5.54838 5.66961 5.67623 5.70959 5.76443 5.84454 5.92211 6.16141 6.22727 6.86608 6.96514 7.38959 7.53602 8.93295 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.001929 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.665141 B =14509.312941 C =15092.456572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.027 4.027 3 C -0.077 4.077 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.131 4.131 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.105 4.105 10 C -0.133 4.133 11 C 0.101 3.899 12 N -0.621 5.621 13 C 0.699 3.301 14 O -0.639 6.639 15 N -0.731 5.731 16 C 0.150 3.850 17 C -0.099 4.099 18 C 0.023 3.977 19 C -0.539 4.539 20 H 0.068 0.932 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.257 1.257 25 H -0.280 1.280 26 H -0.281 1.281 27 C 0.144 3.856 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.409 0.591 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.068 0.932 47 H -0.009 1.009 48 H -0.008 1.008 49 H 0.263 0.737 50 H 0.065 0.935 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.259 22.896 -22.091 34.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.028 4.028 3 C -0.077 4.077 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.149 4.149 7 C -0.148 4.148 8 C -0.150 4.150 9 C -0.142 4.142 10 C -0.171 4.171 11 C -0.021 4.021 12 N -0.358 5.358 13 C 0.401 3.599 14 O -0.521 6.521 15 N -0.389 5.389 16 C 0.025 3.975 17 C -0.137 4.137 18 C -0.015 4.015 19 C -0.577 4.577 20 H 0.086 0.914 21 C -0.203 4.203 22 N -0.576 5.576 23 Si 0.793 3.207 24 H -0.181 1.181 25 H -0.206 1.206 26 H -0.207 1.207 27 C 0.021 3.979 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.248 0.752 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.010 0.990 48 H 0.010 0.990 49 H 0.072 0.928 50 H 0.083 0.917 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.925 23.292 -21.251 34.076 hybrid contribution -0.571 -0.990 0.620 1.300 sum 12.354 22.302 -20.631 32.797 Atomic orbital electron populations 1.21806 0.94144 1.01411 1.01363 1.19688 0.95597 0.91254 0.96216 1.19737 0.98137 0.94465 0.95378 1.21414 0.97238 0.96586 0.98558 1.21488 0.99945 0.93739 0.99026 1.21457 0.98249 1.00814 0.94352 1.21358 0.98298 0.95686 0.99447 1.21149 1.00670 0.94554 0.98643 1.21673 1.01417 0.94964 0.96189 1.21992 1.01309 0.95964 0.97851 1.21975 1.01674 0.94886 0.83534 1.47246 1.58678 1.11630 1.18227 1.16078 0.78821 0.82215 0.82836 1.90870 1.59672 1.64115 1.37446 1.45212 1.65686 1.07006 1.20997 1.21070 0.96188 0.92720 0.87521 1.21581 1.01161 0.91479 0.99481 1.18947 0.94380 0.94760 0.93364 1.21707 1.39238 0.94549 1.02193 0.91407 1.26050 0.95227 1.04148 0.94846 1.70130 1.42081 1.37424 1.07948 0.85345 0.77751 0.78828 0.78769 1.18082 1.20596 1.20653 1.21404 0.99301 0.79125 0.98076 0.93017 0.94346 0.91603 0.83605 0.83861 0.84385 0.85268 0.87343 0.89936 0.89796 0.87716 0.92001 0.89320 0.89632 0.75203 0.93764 0.93626 0.91275 0.91376 0.99020 0.98953 0.92850 0.91666 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 7.79 71.98 0.56 -1.99 16 2 C -0.03 -0.44 0.60 -53.00 -0.03 -0.47 16 3 C -0.08 -1.26 4.76 -19.87 -0.09 -1.35 16 4 C -0.12 -1.53 8.98 22.27 0.20 -1.33 16 5 C -0.12 -1.46 10.05 22.27 0.22 -1.24 16 6 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 7 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 8 C -0.13 -2.47 8.77 22.27 0.20 -2.27 16 9 C -0.11 -1.10 3.37 30.62 0.10 -1.00 16 10 C -0.13 -1.41 5.74 30.68 0.18 -1.23 16 11 C 0.10 1.43 6.39 86.36 0.55 1.98 16 12 N -0.62 -14.19 2.42 -837.72 -2.03 -16.22 16 13 C 0.70 22.49 8.30 179.05 1.49 23.98 16 14 O -0.64 -26.75 15.77 -4.00 -0.06 -26.82 16 15 N -0.73 -21.78 5.46 -478.55 -2.62 -24.40 16 16 C 0.15 5.57 5.68 86.38 0.49 6.06 16 17 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 18 C 0.02 1.22 4.97 29.85 0.15 1.37 16 19 C -0.54 -30.19 9.11 25.60 0.23 -29.95 16 20 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 21 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 22 N -0.94 -57.56 13.29 21.45 0.28 -57.28 16 23 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 27 C 0.14 3.12 4.81 86.22 0.41 3.54 16 28 H 0.05 1.13 5.97 -2.39 -0.01 1.12 16 29 H 0.04 0.89 7.39 -2.38 -0.02 0.87 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.15 1.19 5.90 -2.91 -0.02 1.18 16 32 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 33 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.11 2.25 7.18 -2.91 -0.02 2.23 16 36 H 0.08 0.69 7.58 -2.39 -0.02 0.67 16 37 H 0.08 0.70 7.44 -2.39 -0.02 0.68 16 38 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.84 6.34 -2.39 -0.02 0.82 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 1.11 5.64 -2.39 -0.01 1.09 16 42 H 0.41 9.31 5.96 -92.71 -0.55 8.76 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 47 H -0.01 -0.50 8.14 -2.38 -0.02 -0.51 16 48 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 49 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 50 H 0.06 1.83 6.46 -2.39 -0.02 1.81 16 51 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -74.43 395.44 3.69 -70.74 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.36 Total: 18.83 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 5.73 Total: -10.80 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -4.36 Total: -97.89 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.06 Total: -26.82 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -74.43 3.69 -70.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172148582.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.120 kcal (2) G-P(sol) polarization free energy of solvation -74.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds